Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO08G327 Micromonas commoda HOM05D005946 ORTHO05D007340 2.2e-31 138.3 67 100.0
Pp3s128_20 Physcomitrium patens HOM05D005946 ORTHO05D007340 9.0e-17 89.7 63 65.1
SEGI_28367 Sequoiadendron giganteum HOM05D005946 ORTHO05D007340 2.6e-16 88.2 63 65.1
Mapoly0008s0042 Marchantia polymorpha HOM05D005946 ORTHO05D007340 1.3e-15 85.9 63 63.5
unitig_747.g21988 Utricularia gibba HOM05D005946 ORTHO05D007340 3.8e-15 84.3 62 66.1
CAN.G1089.18 Capsicum annuum HOM05D005946 ORTHO05D007340 4.9e-15 84.0 62 66.1
Cre07.g325735 Chlamydomonas reinhardtii HOM05D005946 ORTHO05D007340 4.9e-15 84.0 62 62.9
CAN.G843.5 Capsicum annuum HOM05D005946 ORTHO05D007340 8.4e-15 83.2 62 64.5
Solyc03g118140.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 8.4e-15 83.2 62 64.5
Sopen03g037060 Solanum pennellii HOM05D005946 ORTHO05D007340 8.4e-15 83.2 62 64.5
Nitab4.5_0001841g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 1.1e-14 82.8 62 66.1
Solyc06g068780.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 1.1e-14 82.8 62 66.1
Sopen06g026060 Solanum pennellii HOM05D005946 ORTHO05D007340 1.1e-14 82.8 62 66.1
PGSC0003DMG400025576 Solanum tuberosum HOM05D005946 ORTHO05D007340 1.1e-14 82.8 62 66.1
Actinidia27305 Actinidia chinensis HOM05D005946 ORTHO05D007340 1.4e-14 82.4 62 62.9
Os05g0251500 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 1.4e-14 82.4 62 61.3
Ciclev10033263m.g Citrus clementina HOM05D005946 ORTHO05D007340 1.9e-14 82.0 62 61.3
Cc00_g13530 Coffea canephora HOM05D005946 ORTHO05D007340 1.9e-14 82.0 62 64.5
vmacro01071 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 1.9e-14 82.0 62 61.3
CDE10G0705 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 2.4e-14 81.6 62 62.9
CDE10G0420 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 3.2e-14 81.3 58 67.2
Nitab4.5_0008858g0060 Nicotiana tabacum HOM05D005946 ORTHO05D007340 3.2e-14 81.3 62 64.5
AagrBONN_evm.TU.Sc2ySwM_228.3656 Anthoceros agrestis HOM05D005946 ORTHO05D007340 4.2e-14 80.9 63 57.1
AL6G31720 Arabidopsis lyrata HOM05D005946 ORTHO05D007340 4.2e-14 80.9 62 59.7
AT5G20165 Arabidopsis thaliana HOM05D005946 ORTHO05D007340 4.2e-14 80.9 62 59.7
Carub.0006s1856 Capsella rubella HOM05D005946 ORTHO05D007340 4.2e-14 80.9 62 59.7
FvH4_4g23990 Fragaria vesca HOM05D005946 ORTHO05D007340 4.2e-14 80.9 63 63.5
Gohir.D02G150700 Gossypium hirsutum HOM05D005946 ORTHO05D007340 4.2e-14 80.9 63 60.3
Lj4g0023384 Lotus japonicus HOM05D005946 ORTHO05D007340 4.2e-14 80.9 62 61.3
Lalb_Chr05g0223941 Lupinus albus HOM05D005946 ORTHO05D007340 4.2e-14 80.9 62 61.3
Rhsim07G0080600 Rhododendron simsii HOM05D005946 ORTHO05D007340 4.2e-14 80.9 62 61.3
Aa31LG10G8610 Aethionema arabicum HOM05D005946 ORTHO05D007340 5.5e-14 80.5 62 59.7
EL10Ac6g13474 Beta vulgaris HOM05D005946 ORTHO05D007340 5.5e-14 80.5 62 61.3
Eucgr.B03471 Eucalyptus grandis HOM05D005946 ORTHO05D007340 5.5e-14 80.5 62 62.9
Glyma.11G249100 Glycine max HOM05D005946 ORTHO05D007340 5.5e-14 80.5 62 61.3
Prupe.5G124600 Prunus persica HOM05D005946 ORTHO05D007340 5.5e-14 80.5 62 61.3
SalBow5G0243 Salvia bowleyana HOM05D005946 ORTHO05D007340 5.5e-14 80.5 62 62.9
SalBow5G1014 Salvia bowleyana HOM05D005946 ORTHO05D007340 5.5e-14 80.5 62 62.9
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 5.5e-14 80.5 56 66.1
Duzib251G0400 Durio zibethinus HOM05D005946 ORTHO05D007340 7.1e-14 80.1 62 61.3
FvH4_5g11580 Fragaria vesca HOM05D005946 ORTHO05D007340 7.1e-14 80.1 56 66.1
Gohir.A03G127300 Gossypium hirsutum HOM05D005946 ORTHO05D007340 7.1e-14 80.1 62 61.3
Gorai.005G169000 Gossypium raimondii HOM05D005946 ORTHO05D007340 7.1e-14 80.1 62 61.3
Nn3g18946 Nelumbo nucifera HOM05D005946 ORTHO05D007340 7.1e-14 80.1 62 61.3
Thecc.02G276900 Theobroma cacao HOM05D005946 ORTHO05D007340 7.1e-14 80.1 62 61.3
MSTRG.28215 Avicennia marina HOM05D005946 ORTHO05D007340 9.3e-14 79.7 62 61.3
CARHR192660 Cardamine hirsuta HOM05D005946 ORTHO05D007340 1.2e-13 79.3 62 58.1
Thhalv10015210m.g Eutrema salsugineum HOM05D005946 ORTHO05D007340 1.2e-13 79.3 62 58.1
Lsat_1_v5_gn_3_12801 Lactuca sativa HOM05D005946 ORTHO05D007340 1.2e-13 79.3 62 59.7
MBI07_g24770_MAGBIO Magnolia biondii HOM05D005946 ORTHO05D007340 1.2e-13 79.3 56 66.1
MD06G1111800 Malus domestica HOM05D005946 ORTHO05D007340 1.2e-13 79.3 62 59.7
Sp6g24240 Schrenkiella parvula HOM05D005946 ORTHO05D007340 1.2e-13 79.3 62 58.1
Sed0027475 Sechium edule HOM05D005946 ORTHO05D007340 1.2e-13 79.3 62 61.3
THA.LOC109116592 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 1.2e-13 79.3 62 58.1
Zm00001eb237180 Zea mays HOM05D005946 ORTHO05D007340 1.2e-13 79.3 62 62.9
Dinv14819 Davidia involucrata HOM05D005946 ORTHO05D007340 1.6e-13 79.0 62 61.3
Duzib248G1204 Durio zibethinus HOM05D005946 ORTHO05D007340 1.6e-13 79.0 62 59.7
Migut.N01429 Erythranthe guttata HOM05D005946 ORTHO05D007340 1.6e-13 79.0 62 61.3
Gorai.002G192200 Gossypium raimondii HOM05D005946 ORTHO05D007340 1.6e-13 79.0 62 59.7
Manes.12G013300 Manihot esculenta HOM05D005946 ORTHO05D007340 1.6e-13 79.0 62 61.3
Manes.13G017850 Manihot esculenta HOM05D005946 ORTHO05D007340 1.6e-13 79.0 62 61.3
Phvul.001G260400 Phaseolus vulgaris HOM05D005946 ORTHO05D007340 1.6e-13 79.0 62 59.7
PGR004G0564 Punica granatum HOM05D005946 ORTHO05D007340 1.6e-13 79.0 62 61.3
CSS0024427 Camellia sinensis var. sinensis HOM05D005946 ORTHO05D007340 2.1e-13 78.6 62 59.7
MD14G1133000 Malus domestica HOM05D005946 ORTHO05D007340 2.1e-13 78.6 62 59.7
TWI36G1530 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 2.1e-13 78.6 62 59.7
A03p09890 Brassica napus HOM05D005946 ORTHO05D007340 2.7e-13 78.2 62 56.5
A10p19740 Brassica napus HOM05D005946 ORTHO05D007340 2.7e-13 78.2 62 56.5
C09p56030 Brassica napus HOM05D005946 ORTHO05D007340 2.7e-13 78.2 62 56.5
BolC3t13619H Brassica oleracea HOM05D005946 ORTHO05D007340 2.7e-13 78.2 62 56.5
BolC9t58470H Brassica oleracea HOM05D005946 ORTHO05D007340 2.7e-13 78.2 62 56.5
BraA03t10302Z Brassica rapa HOM05D005946 ORTHO05D007340 2.7e-13 78.2 62 56.5
BraA10t44050Z Brassica rapa HOM05D005946 ORTHO05D007340 2.7e-13 78.2 62 56.5
ECA246G0405 Erigeron canadensis HOM05D005946 ORTHO05D007340 2.7e-13 78.2 62 58.1
HanXRQChr17g0534681 Helianthus annuus HOM05D005946 ORTHO05D007340 2.7e-13 78.2 62 58.1
Lsat_1_v5_gn_6_8840 Lactuca sativa HOM05D005946 ORTHO05D007340 2.7e-13 78.2 62 58.1
PSO063G0123 Papaver somniferum HOM05D005946 ORTHO05D007340 2.7e-13 78.2 56 66.1
PSO170G6765 Papaver somniferum HOM05D005946 ORTHO05D007340 2.7e-13 78.2 56 66.1
Rhsim12G0028200 Rhododendron simsii HOM05D005946 ORTHO05D007340 2.7e-13 78.2 62 59.7
TPR.G21803 Trifolium pratense HOM05D005946 ORTHO05D007340 2.7e-13 78.2 62 59.7
TWI36G1309 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 2.7e-13 78.2 62 59.7
CANSAT21G2474 Cannabis sativa HOM05D005946 ORTHO05D007340 3.5e-13 77.8 62 58.1
Migut.B01726 Erythranthe guttata HOM05D005946 ORTHO05D007340 3.5e-13 77.8 62 61.3
TWI14G1045 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 3.5e-13 77.8 62 59.7
CiPaw.05G112200 Carya illinoinensis HOM05D005946 ORTHO05D007340 4.6e-13 77.4 62 59.7
HanXRQChr07g0190741 Helianthus annuus HOM05D005946 ORTHO05D007340 4.6e-13 77.4 62 58.1
arahy.Tifrunner.gnm1.ann1.55451G Arachis hypogaea HOM05D005946 ORTHO05D007340 6.0e-13 77.0 62 58.1
Lalb_Chr09g0332191 Lupinus albus HOM05D005946 ORTHO05D007340 6.0e-13 77.0 62 59.7
Potri.008G176801 Populus trichocarpa HOM05D005946 ORTHO05D007340 6.0e-13 77.0 62 59.7
Potri.010G058300 Populus trichocarpa HOM05D005946 ORTHO05D007340 6.0e-13 77.0 62 59.7
TAR374G1140 Trochodendron aralioides HOM05D005946 ORTHO05D007340 6.0e-13 77.0 56 62.5
Medtr3g085600 Medicago truncatula HOM05D005946 ORTHO05D007340 7.9e-13 76.6 62 58.1
Os02g0299600 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 7.9e-13 76.6 62 58.1
SalBow3G2240 Salvia bowleyana HOM05D005946 ORTHO05D007340 7.9e-13 76.6 62 61.3
CiPaw.06G100600 Carya illinoinensis HOM05D005946 ORTHO05D007340 1.0e-12 76.3 62 58.1
PGR102G2803 Punica granatum HOM05D005946 ORTHO05D007340 1.0e-12 76.3 62 58.1
RcHm_v2.0_Chr4g0430651 Rosa chinensis HOM05D005946 ORTHO05D007340 1.3e-12 75.9 61 62.3
PRCOL_00003875 Prasinoderma coloniale HOM05D005946 ORTHO05D007340 5.1e-12 73.9 62 59.7
unitig_0.g1509 Utricularia gibba HOM05D005946 ORTHO05D007340 8.7e-12 73.2 62 59.7
Psat7g023880 Pisum sativum HOM05D005946 ORTHO05D007340 5.6e-11 70.5 62 56.5
RcHm_v2.0_Chr5g0020411 Rosa chinensis HOM05D005946 ORTHO05D007340 3.7e-10 67.8 61 49.2
THA.LOC104799646 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 3.7e-10 67.8 81 44.4
arahy.Tifrunner.gnm1.ann1.XCNA8V Arachis hypogaea HOM05D005946 ORTHO05D007340 2.6e-08 61.6 91 39.6
FvH4_3g12470 Fragaria vesca HOM05D005946 ORTHO05D045642 3.4e-08 61.2 60 48.3
Peaxi162Scf00314g00635 Petunia axillaris HOM05D005946 ORTHO05D007340 1.0e-07 59.7 43 67.4
C03p11470 Brassica napus HOM05D005946 ORTHO05D007340 3.8e-07 57.8 49 55.1
Actinidia22739 Actinidia chinensis HOM05D005946 ORTHO05D007340 4.9e-07 57.4 60 51.7
HPP92_000512 Vanilla planifolia HOM05D005946 ORTHO05D007340 4.9e-07 57.4 40 65.0
ATR0955G005 Amborella trichopoda HOM05D005946 ORTHO05D007340 6.5e-07 57.0 42 69.0
Nn1g00299 Nelumbo nucifera HOM05D005946 ORTHO05D007340 6.5e-07 57.0 45 55.6
Dinv16088 Davidia involucrata HOM05D005946 ORTHO05D007340 8.4e-07 56.6 35 68.6
FAN07G2898 Fragaria x ananassa HOM05D005946 ORTHO05D007340 2.5e-06 55.1 56 51.8
SGA_v2.0_scaffold11G05656 Striga asiatica HOM05D000612 ORTHO05D000461 2.5e-06 55.1 42 64.3
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 3.2e-06 54.7 46 58.7
Glyma.18G008200 Glycine max HOM05D005946 ORTHO05D007340 4.2e-06 54.3 42 61.9


User provided reference genes

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