Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 0.0e+00 1115.5 546 100.0
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 7.6e-223 777.3 525 70.1
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 1.5e-218 763.1 550 66.9
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 6.9e-216 754.2 526 69.0
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 5.9e-215 751.1 528 65.9
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 7.6e-215 750.7 531 66.9
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 3.8e-214 748.4 528 68.0
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 3.8e-214 748.4 530 65.1
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 5.0e-214 748.0 528 65.7
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 3.2e-213 745.3 525 66.5
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 3.2e-213 745.3 527 66.2
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 4.2e-213 745.0 531 65.7
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 5.5e-213 744.6 528 65.5
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 9.3e-213 743.8 528 65.5
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 1.6e-212 743.0 527 67.0
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 2.1e-212 742.7 531 65.0
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 2.7e-212 742.3 530 64.7
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 3.6e-212 741.9 528 65.2
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 4.6e-212 741.5 527 65.8
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 6.1e-212 741.1 525 65.5
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 7.9e-212 740.7 527 65.3
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 7.9e-212 740.7 528 65.0
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 1.3e-211 740.0 527 65.7
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 3.0e-211 738.8 527 66.0
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 3.9e-211 738.4 527 66.0
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 5.1e-211 738.0 525 65.1
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 5.1e-211 738.0 525 65.5
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 6.7e-211 737.6 531 65.0
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 6.7e-211 737.6 531 65.0
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 1.1e-210 736.9 531 65.5
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 1.1e-210 736.9 527 65.5
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 1.5e-210 736.5 527 65.5
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 1.5e-210 736.5 531 65.3
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 1.5e-210 736.5 531 64.6
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 1.9e-210 736.1 525 66.1
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 1.9e-210 736.1 528 64.4
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 2.5e-210 735.7 532 65.0
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 2.5e-210 735.7 531 65.2
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 2.5e-210 735.7 527 65.3
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 4.3e-210 734.9 528 64.8
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 5.7e-210 734.6 528 64.8
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 1.6e-209 733.0 525 65.1
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 1.6e-209 733.0 527 64.7
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 2.2e-209 732.6 531 64.0
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 2.8e-209 732.3 529 64.3
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 2.8e-209 732.3 527 64.9
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 3.7e-209 731.9 527 63.9
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 3.7e-209 731.9 527 64.9
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 3.7e-209 731.9 531 64.6
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 4.8e-209 731.5 531 65.3
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 4.8e-209 731.5 531 64.6
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 1.1e-208 730.3 527 64.7
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 1.1e-208 730.3 526 64.8
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 1.1e-208 730.3 531 64.2
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 1.1e-208 730.3 527 64.7
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 1.1e-208 730.3 525 65.1
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 1.4e-208 729.9 532 64.5
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 1.8e-208 729.6 527 64.9
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 2.4e-208 729.2 529 65.2
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 2.4e-208 729.2 532 64.5
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 3.1e-208 728.8 527 64.9
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 3.1e-208 728.8 531 64.2
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 4.1e-208 728.4 531 64.2
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 4.1e-208 728.4 531 64.2
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 5.3e-208 728.0 531 64.0
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 5.3e-208 728.0 525 65.3
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 6.9e-208 727.6 531 64.4
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 6.9e-208 727.6 531 64.4
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 6.9e-208 727.6 531 64.2
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 9.1e-208 727.2 525 65.3
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 1.2e-207 726.9 528 65.0
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 1.2e-207 726.9 531 63.7
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 1.2e-207 726.9 531 63.5
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 1.5e-207 726.5 530 64.7
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 3.4e-207 725.3 531 63.7
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 3.4e-207 725.3 527 64.5
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 3.4e-207 725.3 527 64.5
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 4.5e-207 724.9 533 64.4
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 4.5e-207 724.9 526 65.0
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 5.9e-207 724.5 531 63.8
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 5.9e-207 724.5 525 65.3
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 5.9e-207 724.5 525 65.1
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 5.9e-207 724.5 525 65.1
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 5.9e-207 724.5 531 65.2
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 7.7e-207 724.2 527 63.8
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.0e-206 723.8 527 63.9
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 1.0e-206 723.8 532 64.5
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 1.3e-206 723.4 529 64.1
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 1.7e-206 723.0 533 64.0
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 1.7e-206 723.0 525 64.6
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 1.7e-206 723.0 526 64.4
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 1.7e-206 723.0 527 64.5
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 2.2e-206 722.6 531 63.8
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 2.9e-206 722.2 526 64.3
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 2.9e-206 722.2 538 63.4
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 6.5e-206 721.1 528 64.0
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 6.5e-206 721.1 548 63.1
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 6.5e-206 721.1 531 63.1
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 1.9e-205 719.5 528 64.6
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 3.2e-205 718.8 525 64.0
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 4.2e-205 718.4 526 64.3
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 9.4e-205 717.2 528 64.6
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 6.1e-204 714.5 548 62.0
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 7.9e-204 714.1 527 63.0
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 1.4e-203 713.4 528 64.6
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 1.4e-203 713.4 548 61.9
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 5.1e-203 711.4 546 61.9
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 5.1e-203 711.4 527 62.8
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 6.7e-203 711.1 548 61.3
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 1.1e-202 710.3 528 64.2
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 2.6e-202 709.1 525 62.9
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 9.7e-202 707.2 525 62.7
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 4.8e-201 704.9 531 62.3
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 1.2e-199 700.3 526 62.5
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 3.6e-196 688.7 533 62.5
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 1.1e-192 677.2 486 65.2
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 8.5e-190 667.5 525 61.5
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 2.7e-188 662.5 672 50.4
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 6.1e-188 661.4 488 63.5
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 1.2e-186 657.1 492 63.0
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 2.1e-180 636.3 655 50.2
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 2.7e-180 636.0 529 58.2
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 1.6e-167 593.6 405 66.9
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 1.9e-165 586.6 441 63.7
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 2.3e-163 579.7 532 55.3
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 7.3e-157 558.1 503 54.5
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 4.0e-155 552.4 379 67.0
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 1.4e-144 517.3 490 54.3
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 4.9e-137 492.3 422 57.1
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 3.8e-129 466.1 537 47.7
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 1.1e-120 438.0 703 40.5
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 7.9e-119 431.8 312 68.6
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 3.3e-117 426.4 531 45.2
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 4.1e-99 366.3 291 59.1
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 2.7e-87 327.0 411 44.0
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 6.7e-78 295.8 262 54.6
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 1.8e-59 234.6 153 73.2
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 1.1e-51 208.8 176 54.0
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 6.8e-46 189.5 147 59.9
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 4.3e-40 170.2 167 49.1
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 4.7e-31 140.2 138 50.0
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 8.9e-30 136.0 88 68.2
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 1.5e-24 118.6 93 59.1
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 9.5e-24 115.9 104 51.0
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 4.9e-20 103.6 95 52.6
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 9.0e-14 82.8 94 45.7
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 6.4e-12 76.6 46 73.9
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 1.1e-08 65.9 199 25.1
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 2.1e-07 61.6 92 34.8
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 2.8e-07 61.2 44 61.4
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 6.2e-07 60.1 42 61.9
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 6.2e-07 60.1 42 61.9
PRCOL_00000049 Prasinoderma coloniale HOM05D003983 ORTHO05D004562 1.4e-06 58.9 201 25.9
SGA_v2.0_scaffold47G17755 Striga asiatica HOM05D003754 ORTHO05D004530 1.8e-06 58.5 197 25.4
THA.LOC104803536 Tarenaya hassleriana HOM05D001661 ORTHO05D001575 1.8e-06 58.5 99 37.4
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 2.4e-06 58.2 47 55.3
Hma1.2p1_1882F.1_g306410 Hydrangea macrophylla HOM05D003754 ORTHO05D004530 4.0e-06 57.4 179 27.9
MELO3C018290.2 Cucumis melo HOM05D003983 ORTHO05D004562 5.3e-06 57.0 220 24.1
Lalb_Chr11g0072451 Lupinus albus HOM05D001661 ORTHO05D001575 5.3e-06 57.0 141 30.5
Carub.0007s1003 Capsella rubella HOM05D001661 ORTHO05D001575 9.0e-06 56.2 153 27.5


User provided reference genes

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