Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 5.0e-165 584.3 287 100.0
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 4.2e-95 352.1 274 61.3
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 1.2e-94 350.5 273 60.4
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 3.5e-94 349.0 279 63.1
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 4.6e-94 348.6 272 61.4
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 7.8e-94 347.8 270 60.7
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 1.7e-93 346.7 267 62.9
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 2.3e-93 346.3 272 59.6
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 2.3e-93 346.3 270 60.4
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 3.9e-93 345.5 270 60.4
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 3.9e-93 345.5 270 60.4
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 6.6e-93 344.7 270 60.7
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 6.6e-93 344.7 276 57.6
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 1.1e-92 344.0 271 61.6
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 2.5e-92 342.8 273 59.7
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 4.3e-92 342.0 281 59.1
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 7.3e-92 341.3 276 59.1
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 7.3e-92 341.3 273 59.0
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 1.6e-91 340.1 271 60.5
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 1.6e-91 340.1 270 58.9
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 2.1e-91 339.7 273 59.0
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 2.1e-91 339.7 273 58.6
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 2.1e-91 339.7 273 60.1
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 2.8e-91 339.3 271 59.8
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 4.8e-91 338.6 274 59.5
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 6.2e-91 338.2 277 58.8
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 6.2e-91 338.2 277 58.8
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 6.2e-91 338.2 277 59.2
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 6.2e-91 338.2 267 59.9
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 8.1e-91 337.8 277 58.5
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 1.1e-90 337.4 273 58.2
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 1.1e-90 337.4 272 58.1
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 1.4e-90 337.0 271 59.4
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 1.8e-90 336.7 274 58.4
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 2.4e-90 336.3 273 57.9
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 4.0e-90 335.5 271 57.9
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 4.0e-90 335.5 271 59.4
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 5.3e-90 335.1 270 58.1
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 5.3e-90 335.1 271 59.4
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 6.9e-90 334.7 262 59.9
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 6.9e-90 334.7 275 59.3
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 9.0e-90 334.3 275 58.9
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 9.0e-90 334.3 271 59.4
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 9.0e-90 334.3 273 57.5
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 1.2e-89 334.0 270 59.3
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 1.2e-89 334.0 271 58.3
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 1.2e-89 334.0 271 57.2
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 1.2e-89 334.0 270 57.8
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 1.2e-89 334.0 271 58.7
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 2.0e-89 333.2 273 58.2
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 2.0e-89 333.2 273 56.8
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 2.6e-89 332.8 267 59.2
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 2.6e-89 332.8 271 59.0
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 3.4e-89 332.4 271 59.0
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 3.4e-89 332.4 271 59.0
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 3.4e-89 332.4 271 59.0
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 4.5e-89 332.0 272 58.5
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 4.5e-89 332.0 276 57.2
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 4.5e-89 332.0 271 57.9
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 5.8e-89 331.6 271 58.7
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 5.8e-89 331.6 272 58.5
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 5.8e-89 331.6 272 58.5
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 5.8e-89 331.6 273 59.0
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 5.8e-89 331.6 267 59.6
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 5.8e-89 331.6 273 56.8
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 7.6e-89 331.3 273 58.2
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 7.6e-89 331.3 272 58.5
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 9.9e-89 330.9 272 58.5
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.7e-88 330.1 273 57.1
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 2.2e-88 329.7 272 58.1
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 2.2e-88 329.7 270 56.7
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 2.2e-88 329.7 273 56.0
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 2.9e-88 329.3 274 57.3
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 2.9e-88 329.3 271 56.5
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 2.9e-88 329.3 273 56.0
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 3.8e-88 328.9 306 53.3
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 3.8e-88 328.9 262 61.8
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 3.8e-88 328.9 272 57.7
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 6.4e-88 328.2 273 58.2
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 8.4e-88 327.8 272 57.7
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 8.4e-88 327.8 274 57.7
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 8.4e-88 327.8 275 55.6
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 1.9e-87 326.6 273 56.4
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 3.2e-87 325.9 271 57.6
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 9.3e-87 324.3 270 57.0
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 9.3e-87 324.3 270 57.0
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 2.7e-86 322.8 308 51.9
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 6.0e-86 321.6 273 55.7
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 1.0e-85 320.9 273 54.9
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 6.7e-85 318.2 273 55.3
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 8.7e-85 317.8 267 58.4
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 8.7e-85 317.8 273 55.3
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 1.5e-84 317.0 273 54.6
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 1.5e-84 317.0 273 54.6
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 1.5e-84 317.0 257 58.8
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 4.3e-84 315.5 273 54.6
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 5.6e-84 315.1 272 55.9
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 9.6e-84 314.3 266 54.9
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 1.3e-83 313.9 264 57.2
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 2.1e-83 313.2 268 54.1
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 2.1e-83 313.2 269 58.0
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 6.9e-82 308.1 282 56.0
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 4.5e-81 305.4 284 53.5
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 3.8e-80 302.4 270 55.9
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 9.3e-79 297.7 303 48.8
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 1.5e-76 290.4 244 57.0
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 7.4e-76 288.1 247 55.5
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 2.1e-75 286.6 245 55.5
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 4.8e-75 285.4 393 41.0
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 1.0e-72 277.7 221 57.9
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 1.9e-71 273.5 220 56.8
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 3.0e-69 266.2 269 50.2
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 1.9e-68 263.5 271 50.2
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 2.2e-67 260.0 222 56.8
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.2e-64 250.0 252 50.0
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 1.1e-63 247.7 196 57.7
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 9.4e-63 244.6 267 46.4
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 1.6e-62 243.8 266 46.6
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 6.1e-62 241.9 266 46.2
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 3.3e-60 236.1 175 60.6
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 1.1e-58 231.1 267 44.2
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 2.7e-54 216.5 168 64.3
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 7.4e-52 208.4 267 41.9
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 7.0e-50 201.8 152 59.2
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 1.2e-46 191.0 152 64.5
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 8.0e-46 188.3 240 42.5
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 1.5e-44 184.1 165 55.2
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 1.3e-40 171.0 209 42.6
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 2.2e-35 153.7 266 34.6
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 1.7e-32 144.1 154 46.8
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.5e-31 140.2 154 51.9
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 2.2e-27 127.1 271 29.9
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 5.9e-25 119.0 267 30.0
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 8.6e-24 115.2 180 40.0
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 1.9e-23 114.0 122 46.7
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 7.2e-23 112.1 255 34.1
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 2.8e-22 110.2 95 60.0
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 1.4e-21 107.8 94 44.7
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 2.0e-20 104.0 263 30.4
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 2.4e-18 97.1 148 41.9
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 4.5e-17 92.8 97 47.4
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 2.4e-10 70.5 135 27.4
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 2.4e-10 70.5 135 27.4
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 3.5e-09 66.6 72 47.2
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 7.3e-07 58.9 46 58.7
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 4.7e-06 56.2 56 35.7


User provided reference genes

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