Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 1.6e-117 426.0 207 100.0
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 1.6e-32 143.7 188 39.9
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 4.7e-24 115.5 167 35.9
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 3.1e-23 112.8 167 35.3
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 5.2e-23 112.1 167 35.9
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 6.8e-23 111.7 167 34.7
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 1.2e-22 110.9 167 34.7
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 1.2e-22 110.9 191 37.2
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 2.0e-22 110.2 167 33.5
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 3.4e-22 109.4 167 35.9
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 4.4e-22 109.0 169 35.5
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 4.4e-22 109.0 167 34.7
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 4.4e-22 109.0 167 34.7
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 4.4e-22 109.0 167 34.7
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 4.4e-22 109.0 169 35.5
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 4.4e-22 109.0 167 33.5
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 5.8e-22 108.6 167 35.9
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 7.5e-22 108.2 167 35.3
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 7.5e-22 108.2 169 34.9
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 9.9e-22 107.8 193 34.2
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 1.3e-21 107.5 168 36.3
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 1.3e-21 107.5 167 36.5
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.7e-21 107.1 167 35.9
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 2.2e-21 106.7 169 34.9
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.9e-21 106.3 167 35.9
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 3.7e-21 105.9 167 37.1
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 3.7e-21 105.9 167 37.1
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 3.7e-21 105.9 167 37.1
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 3.7e-21 105.9 169 35.5
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 4.9e-21 105.5 167 33.5
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 4.9e-21 105.5 167 35.9
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 6.4e-21 105.1 166 33.7
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 6.4e-21 105.1 167 34.1
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 6.4e-21 105.1 167 34.7
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 6.4e-21 105.1 167 35.9
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 6.4e-21 105.1 167 33.5
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 8.3e-21 104.8 169 34.3
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 8.3e-21 104.8 167 35.3
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 1.1e-20 104.4 167 32.9
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 1.9e-20 103.6 167 35.3
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 1.9e-20 103.6 167 33.5
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 2.4e-20 103.2 167 32.3
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 2.4e-20 103.2 169 34.3
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 2.4e-20 103.2 169 34.3
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 3.2e-20 102.8 169 33.1
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 3.2e-20 102.8 168 33.9
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 3.2e-20 102.8 167 32.3
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 3.2e-20 102.8 168 34.5
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 4.1e-20 102.4 169 34.3
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 5.4e-20 102.1 166 34.9
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 5.4e-20 102.1 190 31.1
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 5.4e-20 102.1 167 34.1
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 7.1e-20 101.7 167 35.3
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 7.1e-20 101.7 167 32.9
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 9.2e-20 101.3 169 34.3
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.2e-19 100.9 167 34.7
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.2e-19 100.9 167 31.7
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 1.2e-19 100.9 167 33.5
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 1.6e-19 100.5 169 33.7
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 1.6e-19 100.5 167 32.3
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 2.1e-19 100.1 164 34.1
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 2.1e-19 100.1 185 29.7
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 2.7e-19 99.8 169 34.3
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 2.7e-19 99.8 167 33.5
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 3.5e-19 99.4 166 34.3
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 3.5e-19 99.4 169 34.3
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 6.0e-19 98.6 167 31.1
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 6.0e-19 98.6 167 34.1
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 7.8e-19 98.2 167 31.1
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 7.8e-19 98.2 171 35.7
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 7.8e-19 98.2 169 32.5
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.0e-18 97.8 195 30.3
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 1.0e-18 97.8 169 33.7
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 1.0e-18 97.8 167 30.5
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 1.0e-18 97.8 178 32.0
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.3e-18 97.4 167 31.1
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.3e-18 97.4 169 33.7
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 2.3e-18 96.7 168 33.3
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 2.3e-18 96.7 167 33.5
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 2.3e-18 96.7 167 31.1
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 2.3e-18 96.7 170 31.8
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 3.0e-18 96.3 167 33.5
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 3.0e-18 96.3 178 32.0
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 3.9e-18 95.9 167 32.9
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 3.9e-18 95.9 167 33.5
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 3.9e-18 95.9 170 31.2
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 5.1e-18 95.5 169 32.5
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 6.6e-18 95.1 167 30.5
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 8.6e-18 94.7 167 29.9
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 8.6e-18 94.7 171 31.6
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 1.1e-17 94.4 165 35.8
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 1.1e-17 94.4 151 35.8
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.1e-17 94.4 169 33.1
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 1.1e-17 94.4 166 30.1
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 1.5e-17 94.0 168 33.3
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 1.5e-17 94.0 167 31.1
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 1.9e-17 93.6 167 29.9
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 2.5e-17 93.2 167 29.9
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 3.3e-17 92.8 168 32.7
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 3.3e-17 92.8 173 34.1
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 3.3e-17 92.8 167 30.5
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 3.3e-17 92.8 167 29.9
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 4.3e-17 92.4 149 35.6
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 7.3e-17 91.7 190 27.9
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 7.3e-17 91.7 151 31.8
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 7.3e-17 91.7 167 30.5
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 9.5e-17 91.3 167 29.9
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 1.2e-16 90.9 170 30.6
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 2.8e-16 89.7 167 29.3
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 8.1e-16 88.2 127 34.6
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.2e-14 84.3 182 28.6
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 1.2e-14 84.3 136 33.1
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 2.0e-14 83.6 152 32.9
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 3.4e-14 82.8 164 30.5
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 9.9e-14 81.3 188 25.5
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 2.2e-13 80.1 126 34.1
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 3.8e-13 79.3 150 31.3
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 8.4e-13 78.2 105 36.2
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.9e-12 77.0 183 29.5
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.2e-11 74.3 169 29.6
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.1e-11 73.6 149 32.9
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 7.8e-11 71.6 167 29.9
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.3e-10 70.9 176 30.1
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 1.7e-10 70.5 178 28.7
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.5e-09 67.4 105 34.3
PRCOL_00002083 Prasinoderma coloniale HOM05D005619 ORTHO05D006696 2.5e-09 66.6 184 26.6
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 7.3e-09 65.1 99 32.3
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 1.2e-06 57.8 73 35.6


User provided reference genes

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