Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO08G231 Micromonas commoda HOM05D004708 ORTHO05D005573 2.9e-149 531.9 287 100.0
PRCOL_00004729 Prasinoderma coloniale HOM05D004708 ORTHO05D005573 4.2e-23 112.8 218 38.1
Cre13.g590550 Chlamydomonas reinhardtii HOM05D004708 ORTHO05D005573 3.6e-22 109.8 132 47.0
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 3.9e-16 89.7 151 37.1
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 5.0e-16 89.4 167 37.1
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 8.6e-16 88.6 161 36.0
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 1.5e-15 87.8 163 36.2
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 1.5e-15 87.8 160 34.4
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 1.5e-15 87.8 151 36.4
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 1.5e-15 87.8 157 36.9
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 1.9e-15 87.4 149 36.9
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 1.9e-15 87.4 152 37.5
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 2.5e-15 87.0 152 37.5
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 3.3e-15 86.7 151 36.4
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 3.3e-15 86.7 162 34.6
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 3.3e-15 86.7 160 35.0
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 4.3e-15 86.3 152 36.8
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 4.3e-15 86.3 154 35.1
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 4.3e-15 86.3 151 37.1
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 5.6e-15 85.9 149 35.6
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 5.6e-15 85.9 149 35.6
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 5.6e-15 85.9 152 36.2
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 5.6e-15 85.9 175 35.4
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 5.6e-15 85.9 150 36.7
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 5.6e-15 85.9 152 37.5
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 7.3e-15 85.5 157 36.9
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 7.3e-15 85.5 162 34.6
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 9.5e-15 85.1 154 35.7
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 9.5e-15 85.1 152 35.5
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 1.2e-14 84.7 152 37.5
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 1.2e-14 84.7 152 36.2
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 1.6e-14 84.3 152 36.2
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 1.6e-14 84.3 170 34.7
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 1.6e-14 84.3 161 34.2
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 2.1e-14 84.0 150 35.3
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 2.1e-14 84.0 152 34.9
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 2.1e-14 84.0 150 34.7
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 2.1e-14 84.0 165 35.8
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 3.6e-14 83.2 152 35.5
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 3.6e-14 83.2 162 32.1
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 3.6e-14 83.2 125 37.6
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 3.6e-14 83.2 168 35.1
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 4.7e-14 82.8 150 34.7
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 4.7e-14 82.8 152 34.2
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 4.7e-14 82.8 160 33.1
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 4.7e-14 82.8 163 33.7
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 4.7e-14 82.8 163 33.7
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 4.7e-14 82.8 152 35.5
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 6.1e-14 82.4 152 34.9
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 8.0e-14 82.0 164 34.8
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 8.0e-14 82.0 160 33.8
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 1.0e-13 81.6 152 34.2
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 1.4e-13 81.3 163 33.1
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 1.4e-13 81.3 163 31.9
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 1.4e-13 81.3 152 34.2
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 1.8e-13 80.9 152 34.9
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 1.8e-13 80.9 152 36.2
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 1.8e-13 80.9 163 34.4
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 1.8e-13 80.9 170 32.9
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 1.8e-13 80.9 179 32.4
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 2.3e-13 80.5 164 32.3
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 2.3e-13 80.5 164 32.3
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 2.3e-13 80.5 155 33.5
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 2.3e-13 80.5 164 33.5
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 2.3e-13 80.5 151 35.8
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 2.3e-13 80.5 152 36.2
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 3.1e-13 80.1 169 32.0
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 3.1e-13 80.1 166 30.7
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 3.1e-13 80.1 161 32.3
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 4.0e-13 79.7 164 32.3
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 4.0e-13 79.7 166 33.7
Glyma.02G276900 Glycine max HOM05D004708 ORTHO05D005573 4.0e-13 79.7 123 37.4
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 4.0e-13 79.7 163 31.3
Cfa027114 Carpinus fangiana HOM05D004708 ORTHO05D005573 5.2e-13 79.3 269 28.6
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 5.2e-13 79.3 169 33.7
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 5.2e-13 79.3 150 34.0
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 5.2e-13 79.3 150 34.0
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 5.2e-13 79.3 150 33.3
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 5.2e-13 79.3 163 32.5
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 5.2e-13 79.3 166 33.7
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 6.8e-13 79.0 163 33.1
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 6.8e-13 79.0 160 32.5
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 6.8e-13 79.0 164 32.3
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 6.8e-13 79.0 152 32.9
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 8.9e-13 78.6 162 32.7
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 8.9e-13 78.6 162 32.7
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 8.9e-13 78.6 150 33.3
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 8.9e-13 78.6 152 33.6
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 8.9e-13 78.6 152 33.6
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 8.9e-13 78.6 162 33.3
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 1.2e-12 78.2 157 36.3
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 1.2e-12 78.2 161 32.9
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 1.2e-12 78.2 150 32.7
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 1.2e-12 78.2 155 32.3
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 1.5e-12 77.8 162 32.7
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 1.5e-12 77.8 161 32.9
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 2.0e-12 77.4 152 34.9
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 2.6e-12 77.0 159 32.1
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 2.6e-12 77.0 157 33.1
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 4.4e-12 76.3 161 32.9
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 4.4e-12 76.3 163 33.1
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 4.4e-12 76.3 150 33.3
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 5.8e-12 75.9 150 33.3
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 5.8e-12 75.9 164 31.7
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 9.8e-12 75.1 163 32.5
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 9.8e-12 75.1 150 34.0
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 1.3e-11 74.7 162 32.1
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 1.3e-11 74.7 163 31.9
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 1.7e-11 74.3 150 32.0
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 1.7e-11 74.3 149 34.9
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 1.7e-11 74.3 162 32.1
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 2.2e-11 73.9 153 32.7
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 2.2e-11 73.9 164 31.7
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 3.7e-11 73.2 127 33.9
Dinv39998 Davidia involucrata HOM05D004708 ORTHO05D005573 6.4e-11 72.4 150 34.0
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 1.4e-10 71.2 152 33.6
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.9e-10 70.9 150 32.0
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 1.9e-10 70.9 186 29.6
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 2.4e-10 70.5 159 30.8
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 3.2e-10 70.1 130 33.1
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 4.1e-10 69.7 159 32.1
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 9.2e-10 68.6 190 27.9
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.6e-09 67.8 188 27.7
FvH4_3g26020 Fragaria vesca HOM05D004708 ORTHO05D005573 3.5e-09 66.6 118 35.6
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 3.5e-09 66.6 166 30.1
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 3.9e-08 63.2 164 34.1
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 3.9e-08 63.2 192 29.2
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 1.9e-07 60.8 185 28.6
Peaxi162Scf00130g00618 Petunia axillaris HOM05D004708 ORTHO05D005573 3.3e-07 60.1 150 30.0
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 4.3e-07 59.7 140 30.7
C09p13900 Brassica napus HOM05D004708 ORTHO05D005573 5.6e-07 59.3 159 31.4
Lj2A454G55 Lonicera japonica HOM05D004708 ORTHO05D005573 5.6e-07 59.3 126 31.7
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 2.8e-06 57.0 119 35.3
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 2.8e-06 57.0 133 33.1
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 4.7e-06 56.2 81 39.5


User provided reference genes

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