Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 1.0e-116 423.3 204 100.0
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 4.8e-53 211.8 207 51.2
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 1.4e-52 210.3 231 46.8
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 4.0e-52 208.8 221 49.8
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 3.8e-50 202.2 224 46.0
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 4.9e-50 201.8 212 47.2
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 6.5e-50 201.4 228 45.6
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 1.1e-49 200.7 212 46.7
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 4.2e-49 198.7 212 44.8
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 4.2e-49 198.7 212 44.8
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 4.2e-49 198.7 221 44.8
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 1.2e-48 197.2 228 43.9
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.6e-48 196.8 212 44.3
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 2.1e-48 196.4 226 45.1
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.7e-48 196.1 226 45.1
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 3.5e-48 195.7 224 43.8
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 3.5e-48 195.7 223 43.0
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 3.5e-48 195.7 222 44.6
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 3.5e-48 195.7 228 43.4
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 4.6e-48 195.3 231 42.9
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 4.6e-48 195.3 223 43.9
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 4.6e-48 195.3 223 43.9
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 7.9e-48 194.5 229 42.8
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.0e-47 194.1 231 42.4
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 1.0e-47 194.1 227 42.7
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 1.0e-47 194.1 223 44.4
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 1.0e-47 194.1 229 41.9
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 1.0e-47 194.1 229 41.9
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.3e-47 193.7 231 42.4
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 1.3e-47 193.7 227 44.1
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 2.3e-47 193.0 228 43.0
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 3.0e-47 192.6 221 44.3
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 3.0e-47 192.6 229 42.8
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 3.0e-47 192.6 226 43.4
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 3.0e-47 192.6 225 42.7
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 3.0e-47 192.6 228 42.5
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 3.0e-47 192.6 227 43.2
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 3.9e-47 192.2 227 41.9
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 3.9e-47 192.2 230 43.0
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 5.1e-47 191.8 209 44.5
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 8.7e-47 191.0 229 43.2
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 8.7e-47 191.0 226 42.5
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 1.1e-46 190.7 228 42.5
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 1.1e-46 190.7 219 43.8
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 1.1e-46 190.7 228 42.5
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.5e-46 190.3 222 43.2
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 1.5e-46 190.3 226 43.4
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 1.5e-46 190.3 228 42.5
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 1.9e-46 189.9 227 44.1
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 1.9e-46 189.9 228 43.0
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 2.5e-46 189.5 229 43.2
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 3.3e-46 189.1 226 43.8
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 4.3e-46 188.7 221 44.3
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 5.7e-46 188.3 227 41.9
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 7.4e-46 188.0 219 42.0
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 9.6e-46 187.6 228 42.1
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.3e-45 187.2 226 42.0
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 1.3e-45 187.2 234 40.6
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 1.3e-45 187.2 228 43.0
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 1.3e-45 187.2 226 42.5
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 1.3e-45 187.2 222 42.8
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.6e-45 186.8 226 42.0
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 1.6e-45 186.8 229 41.5
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 2.8e-45 186.0 225 41.3
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 2.8e-45 186.0 228 41.7
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 2.8e-45 186.0 212 43.9
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 3.7e-45 185.7 163 53.4
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 4.8e-45 185.3 231 40.7
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 4.8e-45 185.3 231 40.7
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 8.2e-45 184.5 298 36.2
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 1.4e-44 183.7 208 43.3
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 1.4e-44 183.7 209 45.0
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 1.4e-44 183.7 230 41.7
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 2.4e-44 183.0 224 42.9
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 5.3e-44 181.8 227 42.7
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 6.9e-44 181.4 220 42.7
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 9.0e-44 181.0 157 52.9
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 1.5e-43 180.3 209 44.0
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 2.0e-43 179.9 204 44.1
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 2.0e-43 179.9 228 40.8
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 2.6e-43 179.5 220 42.3
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 2.6e-43 179.5 224 40.6
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 1.0e-42 177.6 221 42.1
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.0e-42 177.6 207 45.4
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 1.3e-42 177.2 221 42.1
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 1.3e-42 177.2 221 42.1
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 2.2e-42 176.4 220 41.4
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 2.2e-42 176.4 222 40.5
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 2.2e-42 176.4 235 40.9
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 2.9e-42 176.0 221 42.1
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 3.8e-42 175.6 226 42.0
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 3.8e-42 175.6 226 42.0
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 6.5e-42 174.9 182 48.4
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 6.5e-42 174.9 212 44.3
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 8.5e-42 174.5 221 40.7
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 8.5e-42 174.5 221 40.7
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 8.5e-42 174.5 221 40.7
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 8.5e-42 174.5 221 40.7
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 8.5e-42 174.5 221 40.7
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 1.4e-41 173.7 221 40.7
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 5.5e-41 171.8 156 51.3
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 9.3e-41 171.0 220 39.5
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 1.2e-40 170.6 206 44.2
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.2e-40 170.6 245 40.0
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.1e-40 169.9 231 39.0
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 2.1e-40 169.9 154 51.3
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 3.6e-40 169.1 259 36.7
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 4.6e-40 168.7 156 50.6
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 7.9e-40 167.9 220 41.4
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 1.0e-39 167.5 208 42.3
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.3e-37 160.6 216 37.5
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 2.2e-37 159.8 163 46.6
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 4.8e-37 158.7 152 48.7
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 3.1e-36 156.0 226 38.5
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 9.0e-36 154.5 184 45.7
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 2.6e-35 152.9 221 37.1
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 2.6e-35 152.9 209 39.2
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 2.6e-35 152.9 221 37.1
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 5.0e-34 148.7 161 49.1
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 8.5e-34 147.9 189 42.9
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 1.1e-30 137.5 118 56.8
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 1.3e-29 134.0 212 37.3
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 1.7e-29 133.7 199 36.7
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 5.9e-27 125.2 198 36.4
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.0e-22 110.2 110 45.5
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 1.3e-18 97.4 136 41.2
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 5.0e-18 95.5 96 42.7
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 3.2e-17 92.8 111 44.1
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 7.2e-17 91.7 99 45.5
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 3.6e-16 89.4 88 45.5
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 8.0e-16 88.2 79 49.4
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 2.8e-13 79.7 87 48.3
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 6.3e-13 78.6 87 48.3
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 5.3e-12 75.5 67 58.2
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 1.6e-11 73.9 63 50.8
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 5.9e-11 72.0 59 59.3
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 1.9e-09 67.0 53 58.5
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 1.9e-09 67.0 74 50.0
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 2.6e-06 56.6 138 28.3
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 3.4e-06 56.2 146 29.5
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 4.4e-06 55.8 66 43.9


User provided reference genes

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