Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 4.6e-73 277.7 133 100.0
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 2.6e-44 182.2 133 63.9
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 2.2e-43 179.1 133 62.4
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 2.2e-43 179.1 133 62.4
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 2.9e-43 178.7 133 62.4
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 2.9e-43 178.7 133 61.7
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 2.9e-43 178.7 133 62.4
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 5.0e-43 177.9 133 60.2
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 6.5e-43 177.6 133 60.2
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 6.5e-43 177.6 133 59.4
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 1.1e-42 176.8 133 60.2
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 1.9e-42 176.0 133 61.7
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 1.9e-42 176.0 133 57.9
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 2.5e-42 175.6 133 61.7
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 2.5e-42 175.6 133 60.9
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 4.2e-42 174.9 133 58.6
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 4.2e-42 174.9 133 61.7
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 5.5e-42 174.5 133 60.2
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 5.5e-42 174.5 133 61.7
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 5.5e-42 174.5 133 61.7
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 5.5e-42 174.5 133 61.7
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 5.5e-42 174.5 133 60.2
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 7.2e-42 174.1 133 59.4
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 7.2e-42 174.1 133 60.2
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 7.2e-42 174.1 133 60.9
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 9.4e-42 173.7 133 60.2
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 9.4e-42 173.7 133 59.4
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 9.4e-42 173.7 133 60.9
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 1.2e-41 173.3 133 60.2
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 1.2e-41 173.3 133 57.9
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 1.2e-41 173.3 133 60.2
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 1.6e-41 172.9 130 60.8
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 1.6e-41 172.9 133 57.1
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 1.6e-41 172.9 133 57.9
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 2.7e-41 172.2 133 57.9
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 2.7e-41 172.2 133 60.9
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 3.6e-41 171.8 133 57.1
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 3.6e-41 171.8 133 59.4
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 3.6e-41 171.8 133 59.4
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 3.6e-41 171.8 133 60.2
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 4.7e-41 171.4 133 57.9
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 4.7e-41 171.4 133 55.6
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 6.1e-41 171.0 133 57.9
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 8.0e-41 170.6 133 58.6
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 8.0e-41 170.6 136 59.6
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 1.0e-40 170.2 133 57.1
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 1.0e-40 170.2 133 58.6
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 1.0e-40 170.2 133 58.6
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 1.0e-40 170.2 133 57.9
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 1.4e-40 169.9 130 60.8
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 1.4e-40 169.9 133 57.9
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 1.4e-40 169.9 133 59.4
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 1.4e-40 169.9 133 58.6
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 1.8e-40 169.5 133 57.1
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 1.8e-40 169.5 133 56.4
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 1.8e-40 169.5 133 59.4
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 2.3e-40 169.1 133 57.9
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 2.3e-40 169.1 133 58.6
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 3.0e-40 168.7 133 57.1
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 3.0e-40 168.7 133 59.4
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 3.0e-40 168.7 138 59.4
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 3.0e-40 168.7 133 57.1
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 3.0e-40 168.7 133 55.6
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 3.0e-40 168.7 133 57.9
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 3.9e-40 168.3 133 55.6
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 3.9e-40 168.3 133 57.1
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 3.9e-40 168.3 133 57.1
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 3.9e-40 168.3 133 58.6
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 3.9e-40 168.3 133 58.6
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 3.9e-40 168.3 133 59.4
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 3.9e-40 168.3 133 57.9
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 5.2e-40 167.9 133 58.6
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 5.2e-40 167.9 133 57.1
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 5.2e-40 167.9 133 57.1
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 6.7e-40 167.5 133 57.9
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 6.7e-40 167.5 133 57.1
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 6.7e-40 167.5 133 57.9
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 8.8e-40 167.2 133 57.1
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 8.8e-40 167.2 133 57.1
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 1.5e-39 166.4 133 57.1
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 2.0e-39 166.0 133 54.9
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 9.7e-39 163.7 133 56.4
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 1.3e-38 163.3 133 57.1
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 2.8e-38 162.2 154 51.9
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 6.3e-38 161.0 133 57.1
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.4e-37 159.8 132 56.8
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 1.8e-37 159.5 117 62.4
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 3.1e-37 158.7 132 55.3
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 1.3e-35 153.3 112 63.4
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 1.7e-35 152.9 133 57.9
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 3.8e-35 151.8 105 67.6
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 6.5e-35 151.0 112 64.3
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 8.5e-35 150.6 118 58.5
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 3.2e-34 148.7 105 65.7
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 7.2e-34 147.5 118 56.8
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 9.4e-34 147.1 118 55.9
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 1.2e-33 146.7 133 51.9
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 2.1e-33 146.0 117 58.1
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 2.7e-33 145.6 118 55.1
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 4.7e-33 144.8 140 50.7
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 6.1e-33 144.4 105 65.7
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.6e-31 139.0 133 51.9
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 1.7e-30 136.3 133 51.9
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 1.7e-30 136.3 117 52.1
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 2.8e-30 135.6 133 49.6
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 2.8e-30 135.6 133 49.6
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 6.3e-30 134.4 133 48.1
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 1.1e-29 133.7 105 61.0
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 4.1e-29 131.7 104 62.5
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 4.1e-29 131.7 133 51.1
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 5.3e-29 131.3 132 46.2
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 9.1e-29 130.6 105 59.0
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 7.2e-26 120.9 91 60.4
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 2.1e-25 119.4 133 45.9
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 6.1e-25 117.9 102 52.0
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 1.8e-24 116.3 107 49.5
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 1.8e-24 116.3 117 47.9
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.8e-24 116.3 117 47.9
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 4.0e-24 115.2 133 43.6
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 5.2e-24 114.8 96 53.1
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 6.8e-24 114.4 94 52.1
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 5.7e-23 111.3 95 53.7
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 5.4e-21 104.8 94 54.3
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 3.5e-20 102.1 76 64.5
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 2.5e-18 95.9 133 39.8
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 2.8e-17 92.4 73 56.2
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 2.3e-16 89.4 80 53.8
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 3.0e-16 89.0 67 59.7
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 8.9e-16 87.4 84 56.0
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 1.2e-15 87.0 65 64.6
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 3.4e-15 85.5 65 63.1
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 7.5e-15 84.3 65 63.1
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.7e-14 83.2 77 53.2
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 3.2e-13 79.0 68 50.0
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 1.2e-12 77.0 65 53.8
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 2.7e-12 75.9 63 55.6
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 1.5e-10 70.1 58 48.3
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 6.1e-09 64.7 58 46.6
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 2.6e-07 59.3 58 41.4
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 1.3e-06 57.0 60 40.0


User provided reference genes

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