Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 9.9e-308 1059.3 538 100.0
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 8.4e-57 225.7 319 44.5
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 2.8e-52 210.7 529 34.8
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 2.4e-51 207.6 313 42.8
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 2.6e-50 204.1 535 32.7
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 4.5e-50 203.4 321 41.1
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 6.1e-47 193.0 323 41.5
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.3e-46 191.8 527 31.1
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.8e-46 191.4 323 39.0
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 2.3e-46 191.0 323 37.8
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 3.0e-46 190.7 384 35.9
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 3.0e-46 190.7 530 32.1
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 6.7e-46 189.5 318 38.1
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 6.7e-46 189.5 512 32.8
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 8.7e-46 189.1 515 32.8
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.1e-45 188.7 519 31.4
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.9e-45 188.0 520 31.5
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 4.3e-45 186.8 316 37.3
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 4.3e-45 186.8 319 38.6
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 5.7e-45 186.4 321 37.4
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 5.7e-45 186.4 513 32.9
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 5.7e-45 186.4 393 34.4
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 7.4e-45 186.0 357 36.7
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 7.4e-45 186.0 357 36.7
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 7.4e-45 186.0 316 39.2
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 7.4e-45 186.0 394 34.5
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 9.7e-45 185.7 318 37.7
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 9.7e-45 185.7 357 36.7
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 1.3e-44 185.3 395 35.4
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 1.3e-44 185.3 515 32.2
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 1.6e-44 184.9 356 36.0
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 2.2e-44 184.5 319 38.2
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 2.2e-44 184.5 316 38.9
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 2.8e-44 184.1 354 36.2
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 2.8e-44 184.1 397 35.0
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 2.8e-44 184.1 397 35.5
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 4.8e-44 183.3 356 35.4
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 4.8e-44 183.3 356 35.7
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 6.3e-44 183.0 358 36.6
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 6.3e-44 183.0 336 37.5
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 8.2e-44 182.6 391 34.8
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.1e-43 182.2 318 37.1
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 1.1e-43 182.2 340 36.5
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.4e-43 181.8 428 33.6
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 1.4e-43 181.8 321 37.7
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 2.4e-43 181.0 340 36.8
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 2.4e-43 181.0 323 36.2
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 2.4e-43 181.0 358 36.3
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 3.1e-43 180.6 522 31.4
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 3.1e-43 180.6 319 37.9
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 3.1e-43 180.6 316 37.7
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 4.1e-43 180.3 515 30.7
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 4.1e-43 180.3 527 31.9
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 5.3e-43 179.9 376 34.6
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 5.3e-43 179.9 515 30.9
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 6.9e-43 179.5 321 38.3
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 6.9e-43 179.5 319 37.3
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 6.9e-43 179.5 324 37.0
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 6.9e-43 179.5 356 34.6
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 6.9e-43 179.5 318 36.5
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 6.9e-43 179.5 357 36.7
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 1.2e-42 178.7 316 37.3
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 1.2e-42 178.7 321 36.1
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 1.2e-42 178.7 512 31.6
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 2.0e-42 177.9 317 37.5
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 2.0e-42 177.9 399 32.6
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 2.6e-42 177.6 318 35.8
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 2.6e-42 177.6 316 36.7
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.6e-42 177.6 321 36.8
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 3.4e-42 177.2 527 30.7
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 3.4e-42 177.2 319 35.7
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 3.4e-42 177.2 311 36.7
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 3.4e-42 177.2 319 35.7
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 3.4e-42 177.2 352 35.5
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 3.4e-42 177.2 319 37.3
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 4.5e-42 176.8 319 35.7
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 4.5e-42 176.8 319 35.7
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 4.5e-42 176.8 318 36.8
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 5.9e-42 176.4 516 29.7
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 7.7e-42 176.0 321 36.8
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 7.7e-42 176.0 348 35.3
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 7.7e-42 176.0 321 36.8
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 7.7e-42 176.0 319 37.6
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 7.7e-42 176.0 318 37.7
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 7.7e-42 176.0 359 35.7
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.0e-41 175.6 354 35.9
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 1.0e-41 175.6 318 37.1
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.0e-41 175.6 357 36.1
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 1.3e-41 175.3 322 37.0
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 1.3e-41 175.3 322 37.0
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.3e-41 175.3 320 36.2
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.3e-41 175.3 322 37.0
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.3e-41 175.3 525 30.3
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.3e-41 175.3 321 35.8
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 1.3e-41 175.3 357 36.1
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 1.7e-41 174.9 322 37.0
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 1.7e-41 174.9 324 36.4
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 1.7e-41 174.9 326 36.5
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 1.7e-41 174.9 321 36.1
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 1.7e-41 174.9 528 30.3
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.7e-41 174.9 525 30.3
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 1.7e-41 174.9 369 34.4
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 2.2e-41 174.5 321 36.1
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 2.2e-41 174.5 576 28.6
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 2.9e-41 174.1 320 35.9
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 2.9e-41 174.1 321 35.5
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 2.9e-41 174.1 514 30.9
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 3.8e-41 173.7 364 35.7
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 3.8e-41 173.7 286 37.8
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 8.5e-41 172.6 346 35.8
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 8.5e-41 172.6 375 35.2
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 1.1e-40 172.2 319 36.7
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 1.1e-40 172.2 364 34.6
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 1.4e-40 171.8 336 36.3
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 1.4e-40 171.8 251 41.0
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.9e-40 171.4 319 35.7
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 5.5e-40 169.9 306 36.6
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 5.5e-40 169.9 354 34.5
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 7.2e-40 169.5 316 35.8
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 7.2e-40 169.5 443 31.8
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 9.4e-40 169.1 328 35.4
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.2e-39 168.7 314 35.0
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 2.1e-39 167.9 365 34.0
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 2.7e-39 167.5 290 39.3
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 3.6e-39 167.2 308 38.0
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 6.1e-39 166.4 517 30.9
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 1.0e-38 165.6 310 37.4
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.0e-38 165.6 322 37.6
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.4e-38 165.2 249 39.8
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 1.4e-38 165.2 297 37.4
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 5.1e-38 163.3 529 28.7
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 6.7e-38 162.9 315 35.2
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 2.5e-37 161.0 313 35.8
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 4.3e-37 160.2 275 39.3
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 4.8e-36 156.8 324 35.2
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 1.8e-35 154.8 316 36.7
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 5.3e-35 153.3 348 33.6
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.0e-34 151.4 279 36.6
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.4e-32 145.2 335 33.4
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 7.2e-32 142.9 381 33.3
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 3.5e-26 124.0 273 33.7
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 3.8e-25 120.6 413 28.1
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.1e-24 119.0 231 35.9
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 5.2e-22 110.2 388 28.1
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 6.7e-22 109.8 127 46.5
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 7.5e-21 106.3 155 40.6
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 7.0e-19 99.8 215 35.3
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 2.0e-18 98.2 212 33.0
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 3.8e-17 94.0 177 34.5
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 5.0e-17 93.6 213 34.3
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 1.9e-16 91.7 108 47.2
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 4.0e-14 84.0 147 35.4
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 3.4e-13 80.9 101 45.5
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 1.7e-12 78.6 83 48.2
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 6.3e-12 76.6 137 38.0
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 2.4e-11 74.7 554 26.0
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.0e-09 69.3 134 35.1
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 2.9e-09 67.8 67 50.7
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 1.1e-08 65.9 151 33.1
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 9.5e-08 62.8 132 35.6
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 9.5e-08 62.8 314 24.8
Sabra08G0016300 Salix brachista HOM05D002054 ORTHO05D005362 3.6e-07 60.8 166 30.1
PGSC0003DMG400026179 Solanum tuberosum HOM05D002054 ORTHO05D005362 1.4e-06 58.9 194 24.7
CAN.G640.25 Capsicum annuum HOM05D002054 ORTHO05D005362 3.0e-06 57.8 165 26.7
THA.LOC104823188 Tarenaya hassleriana HOM05D002054 ORTHO05D005362 4.0e-06 57.4 199 27.1
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 4.0e-06 57.4 73 42.5
Glyma.02G160100 Glycine max HOM05D002054 ORTHO05D005362 5.2e-06 57.0 164 26.8


User provided reference genes

Program Settings