Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO08G069 Micromonas commoda HOM05D005960 ORTHO05D007537 4.0e-206 721.1 340 100.0
PRCOL_00002980 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.0e-55 221.5 341 34.6
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 9.7e-51 204.9 349 35.5
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 1.7e-50 204.1 347 36.3
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 2.2e-50 203.8 349 35.5
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 3.7e-50 203.0 349 35.8
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 3.7e-50 203.0 349 35.2
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 3.7e-50 203.0 349 35.8
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 4.8e-50 202.6 349 36.7
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 8.2e-50 201.8 349 35.5
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 1.8e-49 200.7 349 35.8
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 2.4e-49 200.3 349 36.1
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 3.1e-49 199.9 349 35.2
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 3.1e-49 199.9 349 35.2
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 3.1e-49 199.9 349 35.5
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 3.1e-49 199.9 349 35.5
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 3.1e-49 199.9 349 35.5
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 4.1e-49 199.5 349 36.1
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 5.3e-49 199.1 349 35.5
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 5.3e-49 199.1 349 35.5
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 5.3e-49 199.1 349 35.2
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 9.1e-49 198.4 346 35.5
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 1.2e-48 198.0 349 35.8
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 1.6e-48 197.6 349 34.7
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 2.6e-48 196.8 349 35.0
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 2.6e-48 196.8 349 35.5
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 2.6e-48 196.8 349 35.8
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 3.5e-48 196.4 349 34.7
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 3.5e-48 196.4 349 35.0
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 3.5e-48 196.4 349 35.5
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 4.5e-48 196.1 349 34.7
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 4.5e-48 196.1 349 35.2
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 4.5e-48 196.1 349 36.4
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 4.5e-48 196.1 349 35.8
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 5.9e-48 195.7 349 34.4
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 5.9e-48 195.7 349 36.1
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 5.9e-48 195.7 349 35.8
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 7.7e-48 195.3 349 34.7
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 7.7e-48 195.3 349 35.2
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 1.0e-47 194.9 349 35.0
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 1.0e-47 194.9 349 35.5
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 1.0e-47 194.9 349 35.5
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 1.0e-47 194.9 349 34.7
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 1.3e-47 194.5 349 34.7
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 1.7e-47 194.1 349 35.5
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 1.7e-47 194.1 350 34.9
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 1.7e-47 194.1 349 34.1
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 1.7e-47 194.1 349 34.7
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 2.2e-47 193.7 349 35.0
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 2.2e-47 193.7 349 35.5
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 2.2e-47 193.7 349 35.2
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 2.9e-47 193.4 349 35.2
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 3.8e-47 193.0 349 35.0
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 3.8e-47 193.0 349 35.0
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 3.8e-47 193.0 349 35.2
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 3.8e-47 193.0 349 34.7
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 5.0e-47 192.6 349 35.0
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 5.0e-47 192.6 349 35.5
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 5.0e-47 192.6 349 34.4
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 8.5e-47 191.8 349 34.4
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 8.5e-47 191.8 364 33.2
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 8.5e-47 191.8 364 33.2
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 1.5e-46 191.0 359 33.1
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 2.5e-46 190.3 349 34.7
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 2.5e-46 190.3 349 34.7
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 2.5e-46 190.3 349 35.0
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 2.5e-46 190.3 349 35.0
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 3.2e-46 189.9 349 35.0
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 4.2e-46 189.5 349 34.7
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 4.2e-46 189.5 349 35.0
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 7.2e-46 188.7 349 34.4
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 9.4e-46 188.3 349 33.5
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 9.4e-46 188.3 349 33.8
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 9.4e-46 188.3 349 34.7
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 1.2e-45 188.0 349 34.4
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 1.6e-45 187.6 352 35.2
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 2.1e-45 187.2 349 35.0
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 4.7e-45 186.0 365 33.7
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 6.1e-45 185.7 336 35.4
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 8.0e-45 185.3 349 33.8
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 1.4e-44 184.5 337 35.3
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 2.3e-44 183.7 349 33.5
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 4.0e-44 183.0 350 32.6
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 6.8e-44 182.2 354 33.9
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 6.8e-44 182.2 361 33.5
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 1.5e-43 181.0 348 33.0
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 2.6e-43 180.3 344 34.9
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 2.6e-43 180.3 348 33.3
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 3.4e-43 179.9 336 34.5
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 5.7e-43 179.1 338 35.5
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 2.8e-42 176.8 334 35.0
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 6.3e-42 175.6 351 32.2
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 8.3e-42 175.3 349 33.0
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 8.3e-42 175.3 341 34.6
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 1.1e-41 174.9 349 33.8
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 1.2e-40 171.4 309 35.9
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 1.7e-39 167.5 309 35.3
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 1.9e-38 164.1 310 34.8
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 5.5e-38 162.5 310 34.8
HPP92_018459 Vanilla planifolia HOM05D005960 ORTHO05D007537 7.2e-38 162.2 259 37.5
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 2.7e-37 160.2 349 32.7
PRCOL_00003347 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 4.7e-37 159.5 344 31.4
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.0e-36 158.3 309 33.7
MCO03G230 Micromonas commoda HOM05D005960 ORTHO05D007537 1.4e-36 157.9 342 31.9
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 5.7e-35 152.5 349 31.5
Hma1.2p1_1813F.1_g303790 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 1.3e-34 151.4 218 39.9
Hma1.2p1_3044F.1_g332082 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 1.3e-34 151.4 218 39.9
Dinv11487 Davidia involucrata HOM05D005960 ORTHO05D007537 3.7e-34 149.8 218 40.4
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 1.4e-33 147.9 218 39.9
MCO05G128 Micromonas commoda HOM05D005960 ORTHO05D007537 9.1e-33 145.2 343 29.4
CDE07G2056 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 2.0e-32 144.1 252 36.1
MCO08G121 Micromonas commoda HOM05D005960 ORTHO05D007537 2.0e-32 144.1 347 29.1
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 2.3e-31 140.6 349 29.8
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 4.3e-30 136.3 336 29.8
PRCOL_00004151 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 3.7e-26 123.2 296 28.4
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.2e-24 118.2 347 28.5
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 4.6e-24 116.3 253 31.2
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 8.3e-18 95.5 295 25.4
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 6.0e-16 89.4 144 38.9
TPR.G22619 Trifolium pratense HOM05D005960 ORTHO05D007537 1.9e-09 67.8 66 45.5
Potri.004G125301 Populus trichocarpa HOM05D005960 ORTHO05D007537 1.6e-08 64.7 65 44.6
MCO08G023 Micromonas commoda HOM05D005960 ORTHO05D270145 1.9e-06 57.8 189 30.2


User provided reference genes

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