Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 1.3e-268 929.1 459 100.0
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 6.4e-98 362.1 474 45.4
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 1.2e-96 357.8 479 45.3
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 3.5e-96 356.3 549 40.4
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 4.6e-96 355.9 500 42.8
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 2.3e-95 353.6 481 44.9
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.5e-94 350.9 487 43.7
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.5e-94 350.1 475 44.2
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 2.5e-94 350.1 477 43.2
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 4.3e-94 349.4 478 45.0
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 5.6e-94 349.0 479 43.6
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.6e-94 349.0 480 45.0
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 7.4e-94 348.6 441 46.9
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 1.6e-93 347.4 471 42.7
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.6e-93 347.4 480 44.0
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 2.1e-93 347.1 474 44.1
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 2.1e-93 347.1 481 44.1
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 2.1e-93 347.1 480 45.0
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.8e-93 346.7 480 44.2
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 3.7e-93 346.3 483 43.7
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 3.7e-93 346.3 486 43.0
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 3.7e-93 346.3 471 43.7
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 6.2e-93 345.5 479 43.8
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 6.2e-93 345.5 478 44.1
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 8.1e-93 345.1 477 44.0
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 8.1e-93 345.1 477 44.0
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 8.1e-93 345.1 485 44.7
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 8.1e-93 345.1 478 44.1
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 1.1e-92 344.7 477 44.9
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 1.1e-92 344.7 480 44.2
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 1.1e-92 344.7 482 43.2
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 1.4e-92 344.4 466 43.6
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 1.4e-92 344.4 473 44.2
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 1.8e-92 344.0 479 44.1
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 1.8e-92 344.0 483 43.9
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 1.8e-92 344.0 479 42.8
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.4e-92 343.6 484 43.8
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 2.4e-92 343.6 471 43.9
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.4e-92 343.6 477 44.7
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 2.4e-92 343.6 478 44.1
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 3.1e-92 343.2 487 42.7
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 4.0e-92 342.8 481 43.0
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 6.9e-92 342.0 476 44.5
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 6.9e-92 342.0 478 43.7
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 1.2e-91 341.3 469 43.7
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.2e-91 341.3 481 43.0
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 1.2e-91 341.3 477 44.4
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 1.2e-91 341.3 467 43.7
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.2e-91 341.3 521 42.0
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 1.2e-91 341.3 482 43.6
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.5e-91 340.9 483 43.7
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 2.0e-91 340.5 467 43.9
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 2.0e-91 340.5 466 43.3
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 2.6e-91 340.1 481 43.0
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 2.6e-91 340.1 487 43.1
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 3.4e-91 339.7 466 43.6
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 3.4e-91 339.7 471 43.5
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 3.4e-91 339.7 476 43.9
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 4.5e-91 339.3 484 43.4
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 5.8e-91 339.0 466 43.3
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 5.8e-91 339.0 466 43.3
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 5.8e-91 339.0 473 43.6
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 7.6e-91 338.6 481 42.6
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 9.9e-91 338.2 469 43.5
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 9.9e-91 338.2 474 43.7
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 9.9e-91 338.2 479 43.8
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 9.9e-91 338.2 484 42.8
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 2.2e-90 337.0 466 43.1
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.2e-90 337.0 493 43.0
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 2.9e-90 336.7 479 42.4
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 3.8e-90 336.3 466 42.7
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 4.9e-90 335.9 467 43.5
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 4.9e-90 335.9 481 43.2
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 4.9e-90 335.9 485 42.7
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 6.4e-90 335.5 482 43.6
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 6.4e-90 335.5 482 42.3
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 8.4e-90 335.1 485 42.9
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.9e-89 334.0 468 43.4
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 1.9e-89 334.0 474 42.4
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.4e-89 333.6 482 43.6
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 4.2e-89 332.8 524 40.5
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 5.5e-89 332.4 476 42.4
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 5.5e-89 332.4 477 42.8
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 7.1e-89 332.0 482 42.5
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 1.2e-88 331.3 432 45.1
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.6e-88 330.9 479 42.6
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 6.0e-88 328.9 486 42.4
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 7.9e-88 328.6 478 42.1
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 3.0e-87 326.6 482 43.2
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 6.7e-87 325.5 503 40.8
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 1.1e-86 324.7 433 44.8
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 1.9e-86 323.9 480 41.5
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 2.5e-86 323.6 480 41.0
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 4.3e-86 322.8 434 46.1
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 8.2e-85 318.5 480 40.4
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 9.0e-84 315.1 457 43.3
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 1.2e-83 314.7 477 41.3
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.0e-82 311.6 448 42.0
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 2.9e-82 310.1 448 42.0
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 3.8e-82 309.7 478 41.0
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 7.1e-81 305.4 462 42.0
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 7.1e-81 305.4 531 39.0
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 1.2e-80 304.7 462 42.6
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 3.5e-80 303.1 451 41.2
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 1.3e-79 301.2 395 44.1
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.1e-78 298.1 457 41.6
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 5.7e-78 295.8 435 40.9
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.6e-77 294.3 456 42.3
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 3.7e-77 293.1 477 38.6
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 4.1e-76 289.7 408 44.1
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.0e-75 287.3 459 39.4
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 2.0e-75 287.3 476 39.1
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 4.5e-75 286.2 447 40.5
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 7.6e-75 285.4 513 37.4
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.2e-74 283.9 405 42.0
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 9.3e-73 278.5 471 39.1
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 2.3e-71 273.9 419 40.8
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.1e-70 271.6 337 46.6
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 3.3e-70 270.0 489 39.1
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 4.3e-70 269.6 379 43.0
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 2.8e-69 266.9 477 37.5
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 2.7e-64 250.4 477 35.0
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.0e-63 246.9 371 41.8
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 2.1e-48 197.6 223 48.0
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 5.2e-47 193.0 456 31.1
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 7.5e-46 189.1 463 31.7
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 1.6e-43 181.4 272 42.3
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 7.7e-43 179.1 332 38.3
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 5.5e-41 172.9 209 45.9
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 8.3e-37 159.1 310 34.8
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.4e-36 157.5 233 42.1
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 1.5e-33 148.3 269 38.3
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.9e-33 147.9 144 53.5
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 1.7e-26 124.8 231 36.4
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.5e-25 121.7 191 40.3
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.1e-24 117.9 80 67.5
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 3.6e-24 117.1 191 38.2
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.6e-19 100.1 157 41.4
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 6.6e-18 96.3 107 48.6
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 1.9e-17 94.7 107 49.5
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 5.6e-17 93.2 107 48.6
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 1.2e-16 92.0 113 46.9
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.1e-16 91.3 71 63.4
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.1e-15 89.0 183 36.1
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.2e-14 85.5 48 81.2
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.3e-13 82.0 109 36.7
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.3e-13 82.0 98 38.8
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.1e-12 79.0 109 36.7
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 5.4e-12 76.6 92 45.7
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 2.1e-11 74.7 108 44.4
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 3.5e-11 73.9 90 44.4
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 1.7e-10 71.6 117 40.2
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 6.6e-10 69.7 68 55.9
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.3e-09 67.4 109 34.9
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 3.1e-07 60.8 103 36.9


User provided reference genes

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