Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO08G009 Micromonas commoda HOM05D001372 ORTHO05D007311 4.0e-46 187.6 85 100.0
HPP92_025391 Vanilla planifolia HOM05D001372 ORTHO05D007311 1.8e-22 109.0 74 62.2
Cre16.g653850 Chlamydomonas reinhardtii HOM05D001372 ORTHO05D007311 3.1e-22 108.2 66 65.2
Mapoly0002s0208 Marchantia polymorpha HOM05D001372 ORTHO05D007311 2.6e-21 105.1 63 65.1
PGR042G3549 Punica granatum HOM05D001372 ORTHO05D007311 2.6e-21 105.1 77 57.1
QL11p039238 Quercus lobata HOM05D001372 ORTHO05D007311 5.8e-21 104.0 73 56.2
SalBow3G1216 Salvia bowleyana HOM05D001372 ORTHO05D007311 5.8e-21 104.0 63 63.5
SalBow5G1173 Salvia bowleyana HOM05D001372 ORTHO05D007311 5.8e-21 104.0 63 63.5
Carub.0003s2981 Capsella rubella HOM05D001372 ORTHO05D007311 7.6e-21 103.6 80 50.0
Os06g0661600 Oryza sativa ssp. japonica HOM05D001372 ORTHO05D007311 7.6e-21 103.6 63 63.5
Pp3c17_11290 Physcomitrium patens HOM05D001372 ORTHO05D007311 7.6e-21 103.6 63 61.9
Aqoxy230s002 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 1.0e-20 103.2 60 68.3
Aqoxy4G03213 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 1.0e-20 103.2 60 68.3
CDE09G1189 Ceratophyllum demersum HOM05D001455 ORTHO05D001587 1.0e-20 103.2 63 63.5
Cc02_g18240 Coffea canephora HOM05D001372 ORTHO05D007311 1.0e-20 103.2 63 63.5
COL.COLO4_17775 Corchorus olitorius HOM05D001372 ORTHO05D007311 1.0e-20 103.2 75 54.7
Hma1.2p1_0584F.1_g183260 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 1.0e-20 103.2 72 59.7
BcaC06g36100 Brassica carinata HOM05D001372 ORTHO05D007311 1.3e-20 102.8 73 53.4
C07p07850 Brassica napus HOM05D001372 ORTHO05D007311 1.3e-20 102.8 73 53.4
BolC7t41203H Brassica oleracea HOM05D001372 ORTHO05D007311 1.3e-20 102.8 73 53.4
BcaB03g16342 Brassica carinata HOM05D001372 ORTHO05D007311 1.7e-20 102.4 73 53.4
CAN.G134.164 Capsicum annuum HOM05D001372 ORTHO05D007311 1.7e-20 102.4 60 66.7
unitig_60.g25449 Utricularia gibba HOM05D001372 ORTHO05D007311 1.7e-20 102.4 63 61.9
A07p04870 Brassica napus HOM05D001372 ORTHO05D007311 2.2e-20 102.1 73 53.4
BraA07t28279Z Brassica rapa HOM05D001372 ORTHO05D007311 2.2e-20 102.1 73 53.4
Potri.009G109100 Populus trichocarpa HOM05D001372 ORTHO05D007311 2.2e-20 102.1 73 57.5
THA.LOC104807341 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 2.2e-20 102.1 73 53.4
AagrBONN_evm.TU.Sc2ySwM_344.4003 Anthoceros agrestis HOM05D001372 ORTHO05D007311 2.9e-20 101.7 62 62.9
CDE07G0396 Ceratophyllum demersum HOM05D001372 ORTHO05D007311 2.9e-20 101.7 63 61.9
COL.COLO4_17203 Corchorus olitorius HOM05D001372 ORTHO05D007311 2.9e-20 101.7 63 61.9
MELO3C018416.2 Cucumis melo HOM05D001372 ORTHO05D007311 2.9e-20 101.7 60 65.0
Migut.N01213 Erythranthe guttata HOM05D001372 ORTHO05D007311 2.9e-20 101.7 63 60.3
Nn2g15585 Nelumbo nucifera HOM05D001372 ORTHO05D007311 2.9e-20 101.7 60 65.0
Nitab4.5_0008194g0080 Nicotiana tabacum HOM05D001372 ORTHO05D007311 2.9e-20 101.7 62 62.9
Zm00001eb389160 Zea mays HOM05D001372 ORTHO05D007311 2.9e-20 101.7 63 61.9
FAN28G0653 Fragaria x ananassa HOM05D001372 ORTHO05D007311 3.8e-20 101.3 66 57.6
FAN28G0897 Fragaria x ananassa HOM05D001372 ORTHO05D007311 3.8e-20 101.3 66 57.6
Oeu010568.1 Olea europaea HOM05D001372 ORTHO05D007311 3.8e-20 101.3 63 60.3
THA.LOC104819597 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 3.8e-20 101.3 73 54.8
DCAR_022076 Daucus carota HOM05D001372 ORTHO05D007311 4.9e-20 100.9 73 54.8
Dinv28822 Davidia involucrata HOM05D001372 ORTHO05D007311 4.9e-20 100.9 60 65.0
Aa31LG8G13440 Aethionema arabicum HOM05D001372 ORTHO05D007311 6.5e-20 100.5 62 61.3
Ah.02g112890 Amaranthus hybridus HOM05D001372 ORTHO05D007311 6.5e-20 100.5 63 60.3
Ah.02g112920 Amaranthus hybridus HOM05D001372 ORTHO05D007311 6.5e-20 100.5 63 60.3
AL3G47750 Arabidopsis lyrata HOM05D001372 ORTHO05D002010 6.5e-20 100.5 62 59.7
AT2G15910 Arabidopsis thaliana HOM05D001372 ORTHO05D002010 6.5e-20 100.5 62 59.7
BcaB08g34618 Brassica carinata HOM05D001372 ORTHO05D007311 6.5e-20 100.5 62 59.7
BcaC01g03046 Brassica carinata HOM05D001372 ORTHO05D007311 6.5e-20 100.5 62 59.7
A03p45650 Brassica napus HOM05D001372 ORTHO05D002010 6.5e-20 100.5 62 59.7
C03p56710 Brassica napus HOM05D001372 ORTHO05D002010 6.5e-20 100.5 62 59.7
BolC3t17955H Brassica oleracea HOM05D001372 ORTHO05D002010 6.5e-20 100.5 62 59.7
BraA03t13697Z Brassica rapa HOM05D001372 ORTHO05D002010 6.5e-20 100.5 62 59.7
CAN.G322.87 Capsicum annuum HOM05D001372 ORTHO05D007311 6.5e-20 100.5 60 65.0
CARHR106260 Cardamine hirsuta HOM05D001372 ORTHO05D007311 6.5e-20 100.5 62 59.7
Duzib132G0052 Durio zibethinus HOM05D001372 ORTHO05D007311 6.5e-20 100.5 63 60.3
Thhalv10023083m.g Eutrema salsugineum HOM05D001372 ORTHO05D002010 6.5e-20 100.5 62 59.7
Gohir.D12G042200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 6.5e-20 100.5 63 60.3
Gorai.008G044200 Gossypium raimondii HOM05D001372 ORTHO05D007311 6.5e-20 100.5 63 60.3
Oeu003708.1 Olea europaea HOM05D001372 ORTHO05D007311 6.5e-20 100.5 61 65.6
Sp3g29230 Schrenkiella parvula HOM05D001372 ORTHO05D007311 6.5e-20 100.5 62 59.7
Sc14g0001710 Simmondsia chinensis HOM05D001372 ORTHO05D007311 6.5e-20 100.5 60 65.0
TWI38G0580 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 6.5e-20 100.5 60 65.0
Cpa.g.sc62.81 Carica papaya HOM05D001372 ORTHO05D007311 8.4e-20 100.1 60 65.0
CiPaw.05G058700 Carya illinoinensis HOM05D001372 ORTHO05D007311 8.4e-20 100.1 60 63.3
AUR62025645 Chenopodium quinoa HOM05D001372 ORTHO05D007311 8.4e-20 100.1 73 54.8
ClCG02G005510 Citrullus lanatus HOM05D001372 ORTHO05D007311 8.4e-20 100.1 60 63.3
CsaV3_7G010120 Cucumis sativus L. HOM05D001372 ORTHO05D007311 8.4e-20 100.1 60 63.3
FAN26G1996 Fragaria x ananassa HOM05D001372 ORTHO05D007311 8.4e-20 100.1 66 57.6
Lsat_1_v5_gn_9_109081 Lactuca sativa HOM05D001372 ORTHO05D007311 8.4e-20 100.1 60 63.3
Lj3g0024398 Lotus japonicus HOM05D001372 ORTHO05D007311 8.4e-20 100.1 75 53.3
Manes.15G145700 Manihot esculenta HOM05D001372 ORTHO05D007311 8.4e-20 100.1 60 63.3
CSS0001418 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.1e-19 99.8 60 63.3
CSS0020019 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.1e-19 99.8 60 63.3
Ciclev10030268m.g Citrus clementina HOM05D001372 ORTHO05D007311 1.1e-19 99.8 60 63.3
Peaxi162Scf00016g00132 Petunia axillaris HOM05D001372 ORTHO05D007311 1.1e-19 99.8 60 63.3
Prupe.8G112600 Prunus persica HOM05D001372 ORTHO05D007311 1.1e-19 99.8 60 63.3
RcHm_v2.0_Chr6g0260171 Rosa chinensis HOM05D001372 ORTHO05D007311 1.1e-19 99.8 66 57.6
RcHm_v2.0_Chr6g0260511 Rosa chinensis HOM05D001372 ORTHO05D007311 1.1e-19 99.8 66 57.6
Sed0000118 Sechium edule HOM05D001372 ORTHO05D007311 1.1e-19 99.8 62 59.7
TWI38G1937 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 1.1e-19 99.8 60 63.3
ATR0807G173 Amborella trichopoda HOM05D001372 ORTHO05D007311 1.4e-19 99.4 63 57.1
Aqoxy6G00480 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 1.4e-19 99.4 60 61.7
Duzib052G0457 Durio zibethinus HOM05D001372 ORTHO05D007311 1.4e-19 99.4 63 58.7
FAN19G1239 Fragaria x ananassa HOM05D001372 ORTHO05D007311 1.4e-19 99.4 66 56.1
Gohir.A09G221800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 1.4e-19 99.4 63 60.3
Hma1.2p1_1353F.1_g277710 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 1.4e-19 99.4 60 63.3
Cfa004947 Carpinus fangiana HOM05D001372 ORTHO05D007311 1.9e-19 99.0 60 63.3
AUR62008308 Chenopodium quinoa HOM05D001372 ORTHO05D007311 1.9e-19 99.0 73 54.8
AUR62008309 Chenopodium quinoa HOM05D001372 ORTHO05D007311 1.9e-19 99.0 73 54.8
Haze_02462 Corylus avellana HOM05D001372 ORTHO05D007311 1.9e-19 99.0 60 63.3
Eucgr.F03329 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.9e-19 99.0 63 57.1
HanXRQChr03g0074331 Helianthus annuus HOM05D001372 ORTHO05D007311 1.9e-19 99.0 60 61.7
Phvul.011G050400 Phaseolus vulgaris HOM05D001372 ORTHO05D007311 1.9e-19 99.0 60 63.3
Ah.11g045560 Amaranthus hybridus HOM05D001372 ORTHO05D007311 2.5e-19 98.6 63 57.1
arahy.Tifrunner.gnm1.ann1.34YEZP Arachis hypogaea HOM05D001372 ORTHO05D007311 2.5e-19 98.6 63 57.1
arahy.Tifrunner.gnm1.ann1.FTA1AJ Arachis hypogaea HOM05D001372 ORTHO05D007311 2.5e-19 98.6 63 57.1
AUR62021787 Chenopodium quinoa HOM05D001372 ORTHO05D007311 2.5e-19 98.6 73 53.4
Glyma.11G123600 Glycine max HOM05D001372 ORTHO05D007311 2.5e-19 98.6 60 61.7
Gohir.A12G030200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 2.5e-19 98.6 63 58.7
Lalb_Chr01g0002991 Lupinus albus HOM05D001372 ORTHO05D007311 2.5e-19 98.6 60 61.7
Manes.17G096600 Manihot esculenta HOM05D001372 ORTHO05D007311 2.5e-19 98.6 60 61.7
Rhsim11G0170800 Rhododendron simsii HOM05D001193 ORTHO05D007311 2.5e-19 98.6 60 61.7
Solyc01g109070.2 Solanum lycopersicum HOM05D001372 ORTHO05D007311 2.5e-19 98.6 60 61.7
Sopen01g051270 Solanum pennellii HOM05D001372 ORTHO05D007311 2.5e-19 98.6 60 61.7
Thecc.02G028600 Theobroma cacao HOM05D001372 ORTHO05D007311 2.5e-19 98.6 63 58.7
CANSAT80G1477 Cannabis sativa HOM05D001372 ORTHO05D007311 4.2e-19 97.8 60 60.0
Ca_20817_v3 Cicer arietinum L. HOM05D001372 ORTHO05D007311 4.2e-19 97.8 60 60.0
Medtr4g068370 Medicago truncatula HOM05D001372 ORTHO05D007311 4.2e-19 97.8 60 60.0
RcHm_v2.0_Chr6g0260501 Rosa chinensis HOM05D001372 ORTHO05D007311 4.2e-19 97.8 66 57.6
RcHm_v2.0_Chr6g0260771 Rosa chinensis HOM05D001372 ORTHO05D007311 4.2e-19 97.8 60 61.7
TPR.G10235 Trifolium pratense HOM05D001372 ORTHO05D007311 4.2e-19 97.8 60 60.0
vmacro02159 Vaccinium macrocarpon HOM05D001193 ORTHO05D007311 4.2e-19 97.8 60 60.0
Glyma.12G048200 Glycine max HOM05D001372 ORTHO05D007311 5.5e-19 97.4 60 61.7
MD10G1086600 Malus domestica HOM05D001372 ORTHO05D007311 5.5e-19 97.4 60 60.0
Haze_02464 Corylus avellana HOM05D001372 ORTHO05D007311 7.1e-19 97.1 60 61.7
Nitab4.5_0004946g0010 Nicotiana tabacum HOM05D001372 ORTHO05D007311 7.1e-19 97.1 60 61.7
Psat1g039160 Pisum sativum HOM05D001372 ORTHO05D007311 7.1e-19 97.1 60 60.0
Psat5g239440 Pisum sativum HOM05D001372 ORTHO05D007311 7.1e-19 97.1 60 60.0
Psat5g295360 Pisum sativum HOM05D001372 ORTHO05D007311 7.1e-19 97.1 60 60.0
Sabra09G0083300 Salix brachista HOM05D001372 ORTHO05D007311 7.1e-19 97.1 60 61.7
Atru.chr13.1402 Acer truncatum HOM05D001372 ORTHO05D007311 1.6e-18 95.9 60 58.3
EL10Ac5g10871 Beta vulgaris HOM05D001372 ORTHO05D007311 1.6e-18 95.9 60 58.3
Eucgr.G00508 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.6e-18 95.9 60 58.3
Nn7g36402 Nelumbo nucifera HOM05D001372 ORTHO05D007311 1.6e-18 95.9 60 63.3
PRCOL_00006747 Prasinoderma coloniale HOM05D001372 ORTHO05D007311 1.6e-18 95.9 63 63.5
Medtr0311s0010 Medicago truncatula HOM05D001372 ORTHO05D007311 2.1e-18 95.5 60 58.3
Zm00001eb274880 Zea mays HOM05D001372 ORTHO05D007311 2.7e-18 95.1 54 68.5
Eucgr.G01534 Eucalyptus grandis HOM05D001372 ORTHO05D007311 6.0e-18 94.0 60 56.7
Nitab4.5_0001401g0190 Nicotiana tabacum HOM05D001372 ORTHO05D007311 1.0e-17 93.2 64 57.8
CSS0021822 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 1.8e-17 92.4 60 56.7
SMO111G0193 Selaginella moellendorffii HOM05D001372 ORTHO05D007311 3.0e-17 91.7 57 61.4
SHI05448 Sapria himalayana HOM05D001372 ORTHO05D007311 5.1e-17 90.9 66 59.1
Atru.chr5.2877 Acer truncatum HOM05D001372 ORTHO05D007311 8.7e-17 90.1 72 48.6
arahy.Tifrunner.gnm1.ann1.YI8NBA Arachis hypogaea HOM05D018927 ORTHO05D003639 1.1e-16 89.7 53 62.3
Psat2g085760 Pisum sativum HOM05D001372 ORTHO05D007311 1.5e-16 89.4 60 55.0
Lsat_1_v5_gn_2_32760 Lactuca sativa HOM05D001372 ORTHO05D007311 3.3e-16 88.2 52 67.3
Gorai.006G245400 Gossypium raimondii HOM05D001372 ORTHO05D007311 5.7e-16 87.4 61 55.7
Gohir.A04G115800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 7.4e-16 87.0 54 63.0
HanXRQChr07g0193971 Helianthus annuus HOM05D001372 ORTHO05D007311 1.3e-12 76.3 51 56.9
RcHm_v2.0_Chr6g0259971 Rosa chinensis HOM05D001372 ORTHO05D007311 3.6e-10 68.2 77 41.6
Cc02_g18230 Coffea canephora HOM05D001372 ORTHO05D007311 4.6e-10 67.8 42 61.9


User provided reference genes

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