Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G720 Micromonas commoda HOM05D003428 ORTHO05D004131 0.0e+00 2506.9 1346 100.0
AUR62021981 Chenopodium quinoa HOM05D003428 ORTHO05D004131 7.5e-147 526.2 1251 32.7
AUR62012675 Chenopodium quinoa HOM05D003428 ORTHO05D004131 7.1e-145 519.6 1192 33.4
Pp3c14_24720 Physcomitrium patens HOM05D003428 ORTHO05D004131 2.3e-143 514.6 1039 35.6
Cc09_g01930 Coffea canephora HOM05D003428 ORTHO05D004131 2.5e-142 511.1 1121 33.7
Gohir.A06G147300 Gossypium hirsutum HOM05D003428 ORTHO05D004131 2.5e-142 511.1 1162 32.6
Dinv13872 Davidia involucrata HOM05D003428 ORTHO05D004131 3.3e-142 510.8 1096 34.0
Oeu063903.1 Olea europaea HOM05D003428 ORTHO05D004131 1.2e-141 508.8 1144 33.2
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 1.6e-141 508.4 1185 33.9
SalBow3G0064 Salvia bowleyana HOM05D003428 ORTHO05D004131 2.8e-141 507.7 1201 32.9
CAN.G569.22 Capsicum annuum HOM05D003428 ORTHO05D004131 6.2e-141 506.5 1164 32.4
SalBow3G1270 Salvia bowleyana HOM05D003428 ORTHO05D004131 8.1e-141 506.1 1201 32.8
MELO3C002470.2 Cucumis melo HOM05D003428 ORTHO05D004131 2.4e-140 504.6 1191 32.2
Gorai.010G179100 Gossypium raimondii HOM05D003428 ORTHO05D004131 3.1e-140 504.2 1163 32.4
Lsat_1_v5_gn_7_17340 Lactuca sativa HOM05D003428 ORTHO05D004131 1.5e-139 501.9 1120 33.5
Prupe.4G024000 Prunus persica HOM05D003428 ORTHO05D004131 1.5e-139 501.9 1029 34.2
FvH4_3g02460 Fragaria vesca HOM05D003428 ORTHO05D004131 3.4e-139 500.7 1027 34.3
ClCG03G004880 Citrullus lanatus HOM05D003428 ORTHO05D004131 5.8e-139 500.0 1172 32.3
Lalb_Chr15g0087431 Lupinus albus HOM05D003428 ORTHO05D004131 7.6e-139 499.6 1019 34.6
HanXRQChr15g0471381 Helianthus annuus HOM05D003428 ORTHO05D004131 1.3e-138 498.8 1028 35.0
MD05G1342900 Malus domestica HOM05D003428 ORTHO05D004131 1.7e-138 498.4 1022 34.4
Dinv20034 Davidia involucrata HOM05D003428 ORTHO05D004131 2.9e-138 497.7 1182 33.2
Thecc.06G217400 Theobroma cacao HOM05D003428 ORTHO05D004131 3.8e-138 497.3 1120 32.9
Duzib235G0114 Durio zibethinus HOM05D003428 ORTHO05D004131 6.4e-138 496.5 1032 33.8
HanXRQChr05g0129871 Helianthus annuus HOM05D003428 ORTHO05D004131 6.4e-138 496.5 1036 34.4
TPR.G37012 Trifolium pratense HOM05D003428 ORTHO05D004131 6.4e-138 496.5 1022 34.6
Nitab4.5_0010096g0010 Nicotiana tabacum HOM05D003428 ORTHO05D004131 8.4e-138 496.1 1176 32.2
RcHm_v2.0_Chr5g0003711 Rosa chinensis HOM05D003428 ORTHO05D004131 8.4e-138 496.1 1025 34.0
MD10G1317800 Malus domestica HOM05D003428 ORTHO05D004131 1.1e-137 495.7 1025 34.1
Migut.M01297 Erythranthe guttata HOM05D003428 ORTHO05D004131 1.9e-137 495.0 1131 33.5
CiPaw.10G069400 Carya illinoinensis HOM05D003428 ORTHO05D004131 3.2e-137 494.2 1163 32.8
Sc17g0007210 Simmondsia chinensis HOM05D003428 ORTHO05D004131 1.2e-136 492.3 1020 34.4
Glyma.07G259000 Glycine max HOM05D003428 ORTHO05D004131 2.1e-136 491.5 1032 34.3
Medtr4g131850 Medicago truncatula HOM05D003428 ORTHO05D004131 2.1e-136 491.5 1019 34.6
FAN25G3463 Fragaria x ananassa HOM05D003428 ORTHO05D004131 7.8e-136 489.6 1027 33.8
CiPaw.09G089300 Carya illinoinensis HOM05D003428 ORTHO05D004131 2.3e-135 488.0 1017 34.2
Ah.14g088090 Amaranthus hybridus HOM05D003428 ORTHO05D004131 3.0e-135 487.6 1030 34.9
Glyma.17G015200 Glycine max HOM05D003428 ORTHO05D004131 3.0e-135 487.6 1175 32.3
Lj4g0005527 Lotus japonicus HOM05D003428 ORTHO05D004131 3.9e-135 487.3 1020 34.9
Hund23486 Selenicereus undatus HOM05D003428 ORTHO05D004131 3.9e-135 487.3 1031 35.1
Ah.09g235070 Amaranthus hybridus HOM05D003428 ORTHO05D004131 5.1e-135 486.9 1198 32.1
ECA248G3692 Erigeron canadensis HOM05D003428 ORTHO05D004131 5.1e-135 486.9 1164 32.6
Peaxi162Scf00262g00059 Petunia axillaris HOM05D003428 ORTHO05D004131 1.5e-134 485.3 1121 32.9
TAR624G0497 Trochodendron aralioides HOM05D003428 ORTHO05D004131 1.9e-134 485.0 1035 33.9
GSVIVG01012655001 Vitis vinifera HOM05D003428 ORTHO05D004131 1.9e-134 485.0 1020 34.5
Ca_30202_v3 Cicer arietinum L. HOM05D003428 ORTHO05D004131 2.5e-134 484.6 1019 34.7
FAN21G0107 Fragaria x ananassa HOM05D003428 ORTHO05D004131 5.6e-134 483.4 1072 33.8
CARHR050470 Cardamine hirsuta HOM05D003428 ORTHO05D004131 9.6e-134 482.6 1173 31.2
CDE05G1926 Ceratophyllum demersum HOM05D003428 ORTHO05D004131 9.6e-134 482.6 988 35.1
Gorai.009G177000 Gossypium raimondii HOM05D003428 ORTHO05D004131 1.6e-133 481.9 1186 32.3
Solyc02g080340.3 Solanum lycopersicum HOM05D003428 ORTHO05D004131 1.6e-133 481.9 1164 32.0
HanXRQChr01g0003641 Helianthus annuus HOM05D003428 ORTHO05D004131 2.1e-133 481.5 1010 34.2
Sopen02g025040 Solanum pennellii HOM05D003428 ORTHO05D004131 2.1e-133 481.5 1164 32.0
ATR0752G216 Amborella trichopoda HOM05D003428 ORTHO05D004131 2.8e-133 481.1 1000 34.9
MBI02_g28339_MAGBIO Magnolia biondii HOM05D003428 ORTHO05D004131 2.8e-133 481.1 1192 32.7
Potri.004G018700 Populus trichocarpa HOM05D003428 ORTHO05D004131 4.8e-133 480.3 1193 31.9
Psat4g063040 Pisum sativum HOM05D003428 ORTHO05D004131 1.4e-132 478.8 977 34.6
arahy.Tifrunner.gnm1.ann1.IL23TX Arachis hypogaea HOM05D003428 ORTHO05D004131 4.0e-132 477.2 1172 31.7
Eucgr.E04091 Eucalyptus grandis HOM05D003428 ORTHO05D004131 4.0e-132 477.2 1169 32.2
SGA_v2.0_scaffold7G03871 Striga asiatica HOM05D003428 ORTHO05D004131 4.0e-132 477.2 1195 31.7
ECA236G4773 Erigeron canadensis HOM05D003428 ORTHO05D004131 9.0e-132 476.1 1037 33.7
Aqoxy7G03064 Aquilegia oxysepala HOM05D003428 ORTHO05D004131 1.2e-131 475.7 1039 33.7
Zm00001eb322860 Zea mays HOM05D003428 ORTHO05D004131 1.2e-131 475.7 1026 33.7
Ciclev10014053m.g Citrus clementina HOM05D003428 ORTHO05D004131 2.0e-131 474.9 1123 32.2
Potri.011G000200 Populus trichocarpa HOM05D003428 ORTHO05D004131 2.6e-131 474.6 1028 33.9
EL10Ac8g20020 Beta vulgaris HOM05D003428 ORTHO05D004131 3.4e-131 474.2 1172 31.5
PGR042G0159 Punica granatum HOM05D003428 ORTHO05D004131 3.4e-131 474.2 1028 33.6
BcaB07g31289 Brassica carinata HOM05D003428 ORTHO05D004131 5.8e-131 473.4 1034 32.3
Rhsim02G0110400 Rhododendron simsii HOM05D003428 ORTHO05D004131 5.8e-131 473.4 1029 33.2
vmacro15816 Vaccinium macrocarpon HOM05D003428 ORTHO05D004131 5.8e-131 473.4 1137 32.4
Gohir.D06G153100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 1.3e-130 472.2 1162 31.3
QL05p074042 Quercus lobata HOM05D003428 ORTHO05D004131 2.9e-130 471.1 977 34.5
BcaC04g22357 Brassica carinata HOM05D003428 ORTHO05D004131 3.8e-130 470.7 1034 32.3
C09p20200 Brassica napus HOM05D003428 ORTHO05D004131 3.8e-130 470.7 1034 32.3
AT1G61850 Arabidopsis thaliana HOM05D003428 ORTHO05D004131 4.9e-130 470.3 1030 32.3
A09p16630 Brassica napus HOM05D003428 ORTHO05D004131 6.4e-130 469.9 1034 32.3
BraA09t37300Z Brassica rapa HOM05D003428 ORTHO05D004131 6.4e-130 469.9 1034 32.3
Gohir.D05G171900 Gossypium hirsutum HOM05D003428 ORTHO05D004131 6.4e-130 469.9 1026 33.4
arahy.Tifrunner.gnm1.ann1.D341M5 Arachis hypogaea HOM05D003428 ORTHO05D004131 8.4e-130 469.5 1162 32.3
BolC9t54926H Brassica oleracea HOM05D003428 ORTHO05D004131 1.1e-129 469.2 1036 32.3
Manes.16G010100 Manihot esculenta HOM05D003428 ORTHO05D004131 1.9e-129 468.4 1146 32.6
Carub.0002s0319 Capsella rubella HOM05D003428 ORTHO05D004131 2.4e-129 468.0 1033 32.4
Thhalv10023219m.g Eutrema salsugineum HOM05D003428 ORTHO05D004131 3.2e-129 467.6 1033 32.4
Manes.17G037100 Manihot esculenta HOM05D003428 ORTHO05D004131 4.2e-129 467.2 1029 33.3
AL2G14210 Arabidopsis lyrata HOM05D003428 ORTHO05D004131 7.1e-129 466.5 1127 30.9
arahy.Tifrunner.gnm1.ann1.FVAC65 Arachis hypogaea HOM05D003428 ORTHO05D004131 2.1e-128 464.9 1172 31.4
Sp2g02690 Schrenkiella parvula HOM05D003428 ORTHO05D004131 2.7e-128 464.5 1034 31.8
arahy.Tifrunner.gnm1.ann1.YW42SM Arachis hypogaea HOM05D003428 ORTHO05D004131 3.5e-128 464.2 1162 31.8
SMO367G0744 Selaginella moellendorffii HOM05D003428 ORTHO05D004131 3.5e-128 464.2 949 35.1
CSS0004273 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 6.0e-128 463.4 1190 31.5
CSS0019319 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 6.0e-128 463.4 1190 31.5
PSO832G0075 Papaver somniferum HOM05D003428 ORTHO05D004131 1.0e-127 462.6 1137 31.8
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 3.0e-127 461.1 1160 31.6
Aa31LG1G3130 Aethionema arabicum HOM05D003428 ORTHO05D004131 2.5e-126 458.0 1033 32.4
arahy.Tifrunner.gnm1.ann1.0P9V0B Arachis hypogaea HOM05D003428 ORTHO05D004131 3.3e-126 457.6 1174 31.3
CsaV3_1G010910 Cucumis sativus L. HOM05D003428 ORTHO05D004131 3.3e-126 457.6 1155 30.8
Mapoly0096s0015 Marchantia polymorpha HOM05D003428 ORTHO05D004131 5.6e-126 456.8 1046 33.0
Sed0007172 Sechium edule HOM05D003428 ORTHO05D004131 2.8e-125 454.5 1159 30.8
Os07g0520900 Oryza sativa ssp. japonica HOM05D003428 ORTHO05D004131 3.6e-125 454.1 1171 31.8
VMungo1215G2587 Vigna mungo HOM05D003428 ORTHO05D004131 3.6e-125 454.1 1032 32.8
Phvul.003G077100 Phaseolus vulgaris HOM05D003428 ORTHO05D004131 2.4e-124 451.4 993 33.6
Cfa000250 Carpinus fangiana HOM05D003428 ORTHO05D004131 5.3e-124 450.3 1118 32.2
Lj2C271T3 Lonicera japonica HOM05D003428 ORTHO05D004131 9.0e-124 449.5 994 34.5
Gohir.D10G014100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 4.5e-123 447.2 1186 31.5
Nn1g03583 Nelumbo nucifera HOM05D003428 ORTHO05D004131 1.7e-122 445.3 1036 32.9
CSS0033465 Camellia sinensis var. sinensis HOM05D003428 ORTHO05D004131 2.9e-122 444.5 1022 32.2
Gorai.011G015900 Gossypium raimondii HOM05D003428 ORTHO05D004131 1.6e-120 438.7 1061 32.2
TWI38G0331 Tripterygium wilfordii HOM05D003428 ORTHO05D004131 2.7e-120 438.0 1015 32.1
unitig_748.g7971 Utricularia gibba HOM05D003428 ORTHO05D004131 2.7e-120 438.0 1141 30.3
PSO210G3795 Papaver somniferum HOM05D003428 ORTHO05D004131 3.0e-119 434.5 1137 30.8
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 3.0e-119 434.5 896 34.8
Ca_21094_v3 Cicer arietinum L. HOM05D003428 ORTHO05D004131 1.9e-118 431.8 1017 32.4
Gohir.A10G014100 Gossypium hirsutum HOM05D003428 ORTHO05D004131 1.9e-118 431.8 1061 32.0
THA.LOC104809511 Tarenaya hassleriana HOM05D003428 ORTHO05D004131 2.5e-118 431.4 1187 29.8
Aa31LG2G8980 Aethionema arabicum HOM05D003428 ORTHO05D004131 1.7e-114 418.7 1030 30.5
Gohir.A05G168700 Gossypium hirsutum HOM05D003428 ORTHO05D004131 3.1e-108 397.9 930 32.2
DCAR_004205 Daucus carota HOM05D003428 ORTHO05D004131 4.5e-107 394.0 902 32.0
Cpa.g.sc198.25 Carica papaya HOM05D003428 ORTHO05D004131 1.0e-106 392.9 611 40.4
Lj1A1228G69 Lonicera japonica HOM05D003428 ORTHO05D004131 3.8e-106 391.0 653 39.1
CBR_g8995 Chara braunii HOM05D003428 ORTHO05D004131 6.5e-106 390.2 692 35.7
COL.COLO4_31743 Corchorus olitorius HOM05D003428 ORTHO05D004131 1.9e-105 388.7 1080 29.9
Lsat_1_v5_gn_1_124260 Lactuca sativa HOM05D003428 ORTHO05D004131 9.3e-105 386.3 917 31.8
Gohir.D09G069300 Gossypium hirsutum HOM05D003428 ORTHO05D004131 5.7e-102 377.1 630 36.8
Gorai.006G083500 Gossypium raimondii HOM05D003428 ORTHO05D004131 3.7e-101 374.4 630 36.7
Gohir.A09G069400 Gossypium hirsutum HOM05D003428 ORTHO05D004131 1.1e-100 372.9 630 36.7
TWI38G0316 Tripterygium wilfordii HOM05D003428 ORTHO05D004131 2.4e-100 371.7 1018 29.9
HPP92_017608 Vanilla planifolia HOM05D003428 ORTHO05D004131 1.9e-97 362.1 1032 29.8
Gohir.D09G069200 Gossypium hirsutum HOM05D003428 ORTHO05D004131 3.0e-95 354.8 638 36.2
Gorai.006G083400 Gossypium raimondii HOM05D003428 ORTHO05D004131 3.0e-95 354.8 637 36.3
Zm00001eb106120 Zea mays HOM05D003428 ORTHO05D004131 2.0e-91 342.0 706 35.4
Actinidia11848 Actinidia chinensis HOM05D003428 ORTHO05D004131 1.2e-88 332.8 646 34.5
Hund21391 Selenicereus undatus HOM05D003428 ORTHO05D004131 3.0e-87 328.2 569 38.1
Atru.chr10.2177 Acer truncatum HOM05D003428 ORTHO05D004131 1.7e-85 322.4 647 35.5
Gohir.A09G069300 Gossypium hirsutum HOM05D003428 ORTHO05D004131 7.7e-83 313.5 592 36.1
CDE05G1211 Ceratophyllum demersum HOM05D003428 ORTHO05D004131 1.5e-81 309.3 772 32.5
Cre10.g425100 Chlamydomonas reinhardtii HOM05D003428 ORTHO05D004131 8.5e-74 283.5 437 38.4
Hma1.2p1_2687F.1_g326960 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 4.4e-62 244.6 439 38.5
PGSC0003DMG400002079 Solanum tuberosum HOM05D003428 ORTHO05D004131 9.5e-57 226.9 304 41.8
Duzib192G0759 Durio zibethinus HOM05D003428 ORTHO05D004131 3.0e-42 178.7 210 42.9
Nn7g36944 Nelumbo nucifera HOM05D003428 ORTHO05D004131 5.1e-34 151.4 166 43.4
Atru.chr10.2178 Acer truncatum HOM05D003428 ORTHO05D004131 5.6e-33 147.9 199 40.7
MSTRG.13150 Avicennia marina HOM05D003428 ORTHO05D004131 8.1e-32 144.1 143 48.3
MCO05G170 Micromonas commoda HOM05D003428 ORTHO05D268702 1.9e-28 132.9 455 27.9
PSO302G0028 Papaver somniferum HOM05D003428 ORTHO05D004131 3.2e-28 132.1 277 33.6
Duzib192G0559 Durio zibethinus HOM05D003428 ORTHO05D004131 9.2e-28 130.6 134 47.8
Hma1.2p1_1622F.1_g294060 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 1.8e-23 116.3 347 29.1
Hma1.2p1_2687F.1_g326970 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 9.3e-20 104.0 110 44.5
Duzib192G1003 Durio zibethinus HOM05D003428 ORTHO05D004131 6.6e-18 97.8 201 34.8
Hma1.2p1_3566F.1_g336820 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 1.3e-16 93.6 550 22.7
Hma1.2p1_3566F.1_g336810 Hydrangea macrophylla HOM05D003428 ORTHO05D004131 1.6e-16 93.2 162 36.4
Cpa.g.c44049 Carica papaya HOM05D003428 ORTHO05D004131 4.8e-16 91.7 140 37.9
COL.COLO4_14509 Corchorus olitorius HOM05D000744 ORTHO05D000332 1.5e-14 86.7 94 45.7
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 1.5e-14 86.7 119 40.3
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 3.4e-14 85.5 111 42.3
Lj1A1228T72 Lonicera japonica HOM05D003428 ORTHO05D004131 1.3e-13 83.6 303 26.1
COL.COLO4_18253 Corchorus olitorius HOM05D003428 ORTHO05D004131 4.2e-12 78.6 109 42.2
COL.COLO4_13886 Corchorus olitorius HOM05D003428 ORTHO05D004131 3.5e-11 75.5 109 38.5
COL.COLO4_27539 Corchorus olitorius HOM05D006757 ORTHO05D004651 4.6e-11 75.1 109 41.3
COL.COLO4_31763 Corchorus olitorius HOM05D001857 ORTHO05D004244 1.3e-10 73.6 408 26.7
MCO16G372 Micromonas commoda HOM05D003428 ORTHO05D004131 3.0e-10 72.4 80 42.5
COL.COLO4_07719 Corchorus olitorius HOM05D003428 ORTHO05D004131 3.3e-09 68.9 108 40.7
COL.COLO4_09520 Corchorus olitorius HOM05D003428 ORTHO05D004131 9.6e-09 67.4 109 38.5
Nn1g02123 Nelumbo nucifera HOM05D003428 ORTHO05D004131 1.3e-08 67.0 127 33.9
CBR_g8997 Chara braunii HOM05D003428 ORTHO05D004131 2.8e-08 65.9 254 29.1
Ah.06g186340 Amaranthus hybridus HOM05D003428 ORTHO05D004131 4.0e-07 62.0 134 37.3
COL.COLO4_34792 Corchorus olitorius HOM05D003428 ORTHO05D004131 4.0e-07 62.0 94 38.3
COL.COLO4_18353 Corchorus olitorius HOM05D002564 ORTHO05D004131 5.3e-07 61.6 74 44.6
Cfa025253 Carpinus fangiana HOM05D003428 ORTHO05D121975 1.2e-06 60.5 330 25.5
Sc03g0001470 Simmondsia chinensis HOM05D000369 ORTHO05D000253 9.9e-06 57.4 325 25.2


User provided reference genes

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