Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G712 Micromonas commoda HOM05D001406 ORTHO05D000470 1.3e-154 549.7 270 100.0
MD15G1174700 Malus domestica HOM05D001406 ORTHO05D002467 9.6e-09 65.1 98 35.7
MCO12G010 Micromonas commoda HOM05D004490 ORTHO05D005353 9.6e-09 65.1 80 38.8
Potri.006G153700 Populus trichocarpa HOM05D001406 ORTHO05D002467 2.8e-08 63.5 90 33.3
Prupe.7G241200 Prunus persica HOM05D001406 ORTHO05D002467 3.6e-08 63.2 109 36.7
CBR_g58400 Chara braunii HOM05D004490 ORTHO05D005353 6.2e-08 62.4 90 36.7
MELO3C010357.2 Cucumis melo HOM05D001406 ORTHO05D002467 6.2e-08 62.4 100 36.0
MD02G1033900 Malus domestica HOM05D001406 ORTHO05D002467 6.2e-08 62.4 101 35.6
MCO06G258 Micromonas commoda HOM05D000175 ORTHO05D002467 8.1e-08 62.0 77 41.6
ClCG06G011010 Citrullus lanatus HOM05D001406 ORTHO05D002467 1.1e-07 61.6 117 33.3
Cfa003360 Carpinus fangiana HOM05D001406 ORTHO05D002467 1.4e-07 61.2 85 38.8
Gohir.A13G199500 Gossypium hirsutum HOM05D001406 ORTHO05D002467 1.4e-07 61.2 88 36.4
Gohir.D13G205000 Gossypium hirsutum HOM05D001406 ORTHO05D002467 1.4e-07 61.2 88 36.4
Gorai.013G233900 Gossypium raimondii HOM05D001406 ORTHO05D002467 1.4e-07 61.2 88 36.4
TWI63G0689 Tripterygium wilfordii HOM05D001406 ORTHO05D002467 1.4e-07 61.2 80 37.5
MSTRG.9792 Avicennia marina HOM05D001406 ORTHO05D002467 1.8e-07 60.8 80 37.5
COL.COLO4_15642 Corchorus olitorius HOM05D001406 ORTHO05D002467 1.8e-07 60.8 107 31.8
Lalb_Chr20g0123101 Lupinus albus HOM05D001981 ORTHO05D000470 1.8e-07 60.8 102 32.4
Nitab4.5_0001941g0060 Nicotiana tabacum HOM05D001406 ORTHO05D002467 1.8e-07 60.8 80 32.5
PGR142G4309 Punica granatum HOM05D001406 ORTHO05D002467 1.8e-07 60.8 80 37.5
Rhsim01G0073200 Rhododendron simsii HOM05D001406 ORTHO05D002467 1.8e-07 60.8 104 35.6
Rhsim01G0073900 Rhododendron simsii HOM05D001406 ORTHO05D002467 1.8e-07 60.8 104 35.6
RcHm_v2.0_Chr2g0088701 Rosa chinensis HOM05D001406 ORTHO05D002467 1.8e-07 60.8 80 37.5
TAR636G2776 Trochodendron aralioides HOM05D001406 ORTHO05D002467 2.4e-07 60.5 91 36.3
HPP92_021813 Vanilla planifolia HOM05D001406 ORTHO05D002467 2.4e-07 60.5 114 33.3
Migut.G00775 Erythranthe guttata HOM05D001406 ORTHO05D002467 3.1e-07 60.1 79 34.2
Manes.14G131700 Manihot esculenta HOM05D001406 ORTHO05D002467 3.1e-07 60.1 100 33.0
QL02p088143 Quercus lobata HOM05D001406 ORTHO05D002467 3.1e-07 60.1 80 36.2
BraA06t26774Z Brassica rapa HOM05D001406 ORTHO05D002467 4.0e-07 59.7 82 35.4
CiPaw.04G170600 Carya illinoinensis HOM05D001406 ORTHO05D002467 4.0e-07 59.7 101 34.7
TWI34G0992 Tripterygium wilfordii HOM05D001406 ORTHO05D002467 4.0e-07 59.7 80 36.2
Ciclev10008750m.g Citrus clementina HOM05D001406 ORTHO05D002467 5.2e-07 59.3 102 34.3
DCAR_009194 Daucus carota HOM05D001406 ORTHO05D002467 5.2e-07 59.3 83 34.9
Gohir.A05G017000 Gossypium hirsutum HOM05D001406 ORTHO05D002467 5.2e-07 59.3 89 33.7
Hma1.2p1_0018F.1_g012510 Hydrangea macrophylla HOM05D001406 ORTHO05D002467 5.2e-07 59.3 104 35.6
Hma1.2p1_0665F.1_g199020 Hydrangea macrophylla HOM05D001406 ORTHO05D002467 5.2e-07 59.3 94 33.0
Manes.06G049100 Manihot esculenta HOM05D001406 ORTHO05D002467 5.2e-07 59.3 89 36.0
Nn8g39432 Nelumbo nucifera HOM05D001406 ORTHO05D002467 5.2e-07 59.3 80 36.2
HPP92_019940 Vanilla planifolia HOM05D000315 ORTHO05D001379 5.2e-07 59.3 91 35.2
AagrBONN_evm.TU.Sc2ySwM_344.1005 Anthoceros agrestis HOM05D001406 ORTHO05D002467 6.8e-07 58.9 95 35.8
CsaV3_1G029930 Cucumis sativus L. HOM05D001406 ORTHO05D002467 6.8e-07 58.9 99 32.3
Mapoly0003s0077 Marchantia polymorpha HOM05D004490 ORTHO05D005353 6.8e-07 58.9 96 37.5
SHI03418 Sapria himalayana HOM05D000105 ORTHO05D000023 6.8e-07 58.9 74 37.8
A06p38590 Brassica napus HOM05D001406 ORTHO05D002467 8.9e-07 58.5 82 34.1
BolC7t44490H Brassica oleracea HOM05D001406 ORTHO05D002467 8.9e-07 58.5 82 34.1
MELO3C010356.2 Cucumis melo HOM05D001406 ORTHO05D002467 8.9e-07 58.5 130 31.5
Eucgr.C01157 Eucalyptus grandis HOM05D001406 ORTHO05D002467 8.9e-07 58.5 106 34.9
FAN23G0167 Fragaria x ananassa HOM05D001406 ORTHO05D002467 8.9e-07 58.5 80 36.2
FAN26G0469 Fragaria x ananassa HOM05D001406 ORTHO05D002467 8.9e-07 58.5 80 36.2
FAN26G3043 Fragaria x ananassa HOM05D001406 ORTHO05D002467 8.9e-07 58.5 80 36.2
FAN28G0695 Fragaria x ananassa HOM05D001406 ORTHO05D002467 8.9e-07 58.5 80 36.2
Gorai.009G018300 Gossypium raimondii HOM05D001406 ORTHO05D002467 8.9e-07 58.5 89 34.8
MD17G1213500 Malus domestica HOM05D000367 ORTHO05D001438 8.9e-07 58.5 109 33.9
Phvul.009G197400 Phaseolus vulgaris HOM05D001406 ORTHO05D002467 8.9e-07 58.5 80 35.0
Pp3c7_20040 Physcomitrium patens HOM05D001406 ORTHO05D002467 8.9e-07 58.5 81 37.0
Pp3c7_20090 Physcomitrium patens HOM05D001406 ORTHO05D002467 8.9e-07 58.5 81 37.0
Sed0020689 Sechium edule HOM05D001406 ORTHO05D002467 8.9e-07 58.5 98 32.7
SMO329G0083 Selaginella moellendorffii HOM05D000367 ORTHO05D001438 8.9e-07 58.5 82 37.8
unitig_37.g12038 Utricularia gibba HOM05D001406 ORTHO05D002467 8.9e-07 58.5 114 30.7
VMungo1309G2083 Vigna mungo HOM05D001406 ORTHO05D002467 8.9e-07 58.5 80 35.0
Dinv41518 Davidia involucrata HOM05D001406 ORTHO05D002467 1.2e-06 58.2 80 35.0
Duzib168G1131 Durio zibethinus HOM05D001406 ORTHO05D002467 1.2e-06 58.2 128 30.5
FvH4_1g03490 Fragaria vesca HOM05D001406 ORTHO05D002467 1.2e-06 58.2 80 36.2
FAN19G3152 Fragaria x ananassa HOM05D001406 ORTHO05D002467 1.2e-06 58.2 80 36.2
Gohir.D05G017900 Gossypium hirsutum HOM05D001406 ORTHO05D002467 1.2e-06 58.2 85 35.3
Lsat_1_v5_gn_6_95721 Lactuca sativa HOM05D001406 ORTHO05D002467 1.2e-06 58.2 73 38.4
Lj1g0002155 Lotus japonicus HOM05D001406 ORTHO05D002467 1.2e-06 58.2 80 35.0
Sabra06G0121700 Salix brachista HOM05D001406 ORTHO05D002467 1.2e-06 58.2 105 31.4
Aa31sc105G20 Aethionema arabicum HOM05D001406 ORTHO05D002467 1.5e-06 57.8 82 34.1
Aqoxy5G00906 Aquilegia oxysepala HOM05D001345 ORTHO05D001190 1.5e-06 57.8 68 45.6
arahy.Tifrunner.gnm1.ann1.PHM66I Arachis hypogaea HOM05D001406 ORTHO05D002467 1.5e-06 57.8 92 33.7
Lalb_Chr12g0197871 Lupinus albus HOM05D001406 ORTHO05D002467 1.5e-06 57.8 73 37.0
Os01g0556400 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D002467 1.5e-06 57.8 95 32.6
SalBow8G4782 Salvia bowleyana HOM05D001406 ORTHO05D002467 1.5e-06 57.8 102 33.3
Sc16g0009740 Simmondsia chinensis HOM05D000367 ORTHO05D001438 1.5e-06 57.8 91 36.3
THA.LOC104808996 Tarenaya hassleriana HOM05D001406 ORTHO05D002467 1.5e-06 57.8 80 35.0
TWI32G0240 Tripterygium wilfordii HOM05D001406 ORTHO05D002467 1.5e-06 57.8 72 41.7
Ca_01052_v3 Cicer arietinum L. HOM05D000367 ORTHO05D001438 2.0e-06 57.4 71 40.8
Glyma.15G006900 Glycine max HOM05D000367 ORTHO05D001438 2.0e-06 57.4 71 40.8
Mapoly0003s0073 Marchantia polymorpha HOM05D001406 ORTHO05D002467 2.0e-06 57.4 100 31.0
Sabra03G0018100 Salix brachista HOM05D000367 ORTHO05D001438 2.0e-06 57.4 101 34.7
Aa31LG10G12230 Aethionema arabicum HOM05D001406 ORTHO05D002467 2.6e-06 57.0 131 32.1
Carub.0005s2419 Capsella rubella HOM05D001406 ORTHO05D002467 2.6e-06 57.0 80 36.2
CDE06G0959 Ceratophyllum demersum HOM05D001406 ORTHO05D002467 2.6e-06 57.0 103 31.1
Oeu018465.1 Olea europaea HOM05D001406 ORTHO05D002467 2.6e-06 57.0 80 35.0
Peaxi162Scf00256g00024 Petunia axillaris HOM05D001406 ORTHO05D002467 2.6e-06 57.0 102 31.4
Sp2g19430 Schrenkiella parvula HOM05D001406 ORTHO05D002467 2.6e-06 57.0 82 34.1
BcaNung06180 Brassica carinata HOM05D001406 ORTHO05D002467 3.4e-06 56.6 76 36.8
Cpa.g.sc75.45 Carica papaya HOM05D001406 ORTHO05D002467 3.4e-06 56.6 99 32.3
Ca_03165_v3 Cicer arietinum L. HOM05D001406 ORTHO05D002467 3.4e-06 56.6 73 37.0
Nn8g39531 Nelumbo nucifera HOM05D001442 ORTHO05D001438 3.4e-06 56.6 85 36.5
PGR031G2348 Punica granatum HOM05D000367 ORTHO05D001438 3.4e-06 56.6 71 39.4
SEGI_07828 Sequoiadendron giganteum HOM05D001406 ORTHO05D002467 3.4e-06 56.6 102 30.4
Sc23g0006440 Simmondsia chinensis HOM05D007032 ORTHO05D008777 3.4e-06 56.6 96 34.4
SGA_v2.0_scaffold102G29906 Striga asiatica HOM05D001406 ORTHO05D002467 3.4e-06 56.6 80 33.8
TAR383G0949 Trochodendron aralioides HOM05D001406 ORTHO05D002467 3.4e-06 56.6 132 30.3
VMungo0540G0764 Vigna mungo HOM05D001981 ORTHO05D000470 3.4e-06 56.6 99 34.3
Zm00001eb346620 Zea mays HOM05D001406 ORTHO05D002467 3.4e-06 56.6 79 35.4
Atru.chr13.9 Acer truncatum HOM05D001345 ORTHO05D001190 4.4e-06 56.2 68 44.1
AL8G22490 Arabidopsis lyrata HOM05D001406 ORTHO05D002467 4.4e-06 56.2 94 33.0
Carub.0006s0465 Capsella rubella HOM05D001406 ORTHO05D002467 4.4e-06 56.2 76 36.8
CiPaw.04G170400 Carya illinoinensis HOM05D001406 ORTHO05D002467 4.4e-06 56.2 80 36.2
CBR_g20169 Chara braunii HOM05D001406 ORTHO05D002467 4.4e-06 56.2 108 37.0
ClCG06G005080 Citrullus lanatus HOM05D001406 ORTHO05D002467 4.4e-06 56.2 73 37.0
MELO3C017839.2 Cucumis melo HOM05D000367 ORTHO05D001438 4.4e-06 56.2 109 31.2
Lalb_Chr13g0301921 Lupinus albus HOM05D001406 ORTHO05D002467 4.4e-06 56.2 84 33.3
PSO017G7280 Papaver somniferum HOM05D001345 ORTHO05D001190 4.4e-06 56.2 68 45.6
PSO170G6651 Papaver somniferum HOM05D001345 ORTHO05D001190 4.4e-06 56.2 68 45.6
Peaxi162Scf01533g00005 Petunia axillaris HOM05D001406 ORTHO05D002467 4.4e-06 56.2 73 37.0
Rhsim04G0223600 Rhododendron simsii HOM05D001406 ORTHO05D002467 4.4e-06 56.2 93 35.5
Rhsim07G0188800 Rhododendron simsii HOM05D001406 ORTHO05D002467 4.4e-06 56.2 111 33.3
Rhsim09G0007200 Rhododendron simsii HOM05D001406 ORTHO05D002467 4.4e-06 56.2 93 35.5
Sed0009507 Sechium edule HOM05D001406 ORTHO05D002467 4.4e-06 56.2 99 30.3
THA.LOC104827421 Tarenaya hassleriana HOM05D001406 ORTHO05D002467 4.4e-06 56.2 73 34.2
TAR625G0785 Trochodendron aralioides HOM05D000367 ORTHO05D001438 4.4e-06 56.2 83 36.1
VMungo0251G3341 Vigna mungo HOM05D001981 ORTHO05D000470 4.4e-06 56.2 90 35.6
AagrBONN_evm.TU.Sc2ySwM_344.993 Anthoceros agrestis HOM05D001406 ORTHO05D002467 5.8e-06 55.8 117 33.3
MSTRG.10101 Avicennia marina HOM05D001406 ORTHO05D002467 5.8e-06 55.8 102 34.3
MSTRG.24886 Avicennia marina HOM05D001345 ORTHO05D001190 5.8e-06 55.8 68 44.1
CARHR182660 Cardamine hirsuta HOM05D001406 ORTHO05D002467 5.8e-06 55.8 73 35.6
Glyma.06G217000 Glycine max HOM05D001406 ORTHO05D002467 5.8e-06 55.8 97 34.0
Glyma.15G149100 Glycine max HOM05D001406 ORTHO05D002467 5.8e-06 55.8 80 33.8
Manes.11G058000 Manihot esculenta HOM05D000367 ORTHO05D001438 5.8e-06 55.8 71 39.4
Os08g0522600 Oryza sativa ssp. japonica HOM05D001345 ORTHO05D001190 5.8e-06 55.8 68 44.1
Psat1g027760 Pisum sativum HOM05D001406 ORTHO05D002467 5.8e-06 55.8 73 35.6
QL05p030721 Quercus lobata HOM05D000367 ORTHO05D001438 5.8e-06 55.8 71 39.4
Sp5g05260 Schrenkiella parvula HOM05D001406 ORTHO05D002467 5.8e-06 55.8 98 31.6
Sed0006472 Sechium edule HOM05D000367 ORTHO05D001438 5.8e-06 55.8 95 34.7
SEGI_39155 Sequoiadendron giganteum HOM05D001406 ORTHO05D002467 5.8e-06 55.8 123 30.1
vmacro06126 Vaccinium macrocarpon HOM05D001406 ORTHO05D002467 5.8e-06 55.8 109 32.1
HPP92_006922 Vanilla planifolia HOM05D001406 ORTHO05D002467 5.8e-06 55.8 73 35.6
VMungo1309G0376 Vigna mungo HOM05D001406 ORTHO05D002467 5.8e-06 55.8 90 30.0
Zm00001eb162560 Zea mays HOM05D001406 ORTHO05D002467 5.8e-06 55.8 80 32.5
Zm00001eb258200 Zea mays HOM05D000367 ORTHO05D001438 5.8e-06 55.8 71 42.3
Aqoxy7G01860 Aquilegia oxysepala HOM05D000367 ORTHO05D001438 7.6e-06 55.5 79 38.0
Aqoxy7G03718 Aquilegia oxysepala HOM05D001406 ORTHO05D002467 7.6e-06 55.5 96 32.3
BcaC08g47180 Brassica carinata HOM05D001345 ORTHO05D001190 7.6e-06 55.5 80 38.8
CSS0022258 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D002467 7.6e-06 55.5 80 35.0
CSS0043323 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D002467 7.6e-06 55.5 80 35.0
CANSAT56G1125 Cannabis sativa HOM05D000367 ORTHO05D001438 7.6e-06 55.5 71 39.4
ClCG07G012190 Citrullus lanatus HOM05D000367 ORTHO05D001438 7.6e-06 55.5 96 33.3
DCAR_030522 Daucus carota HOM05D001406 ORTHO05D002467 7.6e-06 55.5 73 34.2
ECA234G2864 Erigeron canadensis HOM05D000367 ORTHO05D001438 7.6e-06 55.5 65 43.1
Eucgr.J03072 Eucalyptus grandis HOM05D000367 ORTHO05D001438 7.6e-06 55.5 70 40.0
FAN04G2258 Fragaria x ananassa HOM05D005925 ORTHO05D007270 7.6e-06 55.5 86 36.0
Lj5A74G67 Lonicera japonica HOM05D000367 ORTHO05D001438 7.6e-06 55.5 65 43.1
Lalb_Chr07g0178911 Lupinus albus HOM05D001406 ORTHO05D002467 7.6e-06 55.5 100 35.0
Lalb_Chr24g0395461 Lupinus albus HOM05D000367 ORTHO05D001438 7.6e-06 55.5 71 39.4
Oeu000726.1 Olea europaea HOM05D001345 ORTHO05D001190 7.6e-06 55.5 68 44.1
Potri.003G031800 Populus trichocarpa HOM05D000367 ORTHO05D001438 7.6e-06 55.5 101 33.7
Sc12g0008740 Simmondsia chinensis HOM05D000367 ORTHO05D001438 7.6e-06 55.5 144 31.2
vmacro20547 Vaccinium macrocarpon HOM05D001406 ORTHO05D002467 7.6e-06 55.5 76 35.5
Atru.chr7.1222 Acer truncatum HOM05D001406 ORTHO05D002467 9.9e-06 55.1 111 33.3
Actinidia26396 Actinidia chinensis HOM05D001406 ORTHO05D002467 9.9e-06 55.1 99 34.3
AT3G57340 Arabidopsis thaliana HOM05D001406 ORTHO05D002467 9.9e-06 55.1 80 33.8
arahy.Tifrunner.gnm1.ann1.GBJ2WV Arachis hypogaea HOM05D001981 ORTHO05D000470 9.9e-06 55.1 73 41.1
CSS0015754 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D002467 9.9e-06 55.1 80 36.2
CSS0022037 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D002467 9.9e-06 55.1 102 32.4
CSS0030868 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D002467 9.9e-06 55.1 102 32.4
CANSAT11G2034 Cannabis sativa HOM05D001406 ORTHO05D002467 9.9e-06 55.1 106 30.2
CDE07G1801 Ceratophyllum demersum HOM05D001406 ORTHO05D002467 9.9e-06 55.1 95 30.5
CsaV3_4G001970 Cucumis sativus L. HOM05D000367 ORTHO05D001438 9.9e-06 55.1 109 31.2
Thhalv10004478m.g Eutrema salsugineum HOM05D001406 ORTHO05D002467 9.9e-06 55.1 101 32.7
Glyma.04G148200 Glycine max HOM05D001406 ORTHO05D002467 9.9e-06 55.1 73 35.6
Glyma.19G112100 Glycine max HOM05D007032 ORTHO05D008777 9.9e-06 55.1 63 47.6
Lalb_Chr17g0344531 Lupinus albus HOM05D000160 ORTHO05D001344 9.9e-06 55.1 68 35.3
PSO017G5261 Papaver somniferum HOM05D000367 ORTHO05D001438 9.9e-06 55.1 98 32.7
Phvul.001G110800 Phaseolus vulgaris HOM05D007032 ORTHO05D008777 9.9e-06 55.1 64 46.9
SGA_v2.0_scaffold25G11029 Striga asiatica HOM05D001345 ORTHO05D001190 9.9e-06 55.1 68 42.6
SGA_v2.0_scaffold46G17474 Striga asiatica HOM05D000160 ORTHO05D000496 9.9e-06 55.1 110 35.5
THA.LOC104800440 Tarenaya hassleriana HOM05D000367 ORTHO05D001438 9.9e-06 55.1 107 32.7
Thecc.06G029100 Theobroma cacao HOM05D000367 ORTHO05D001438 9.9e-06 55.1 107 31.8
Thecc.09G124900 Theobroma cacao HOM05D001406 ORTHO05D002467 9.9e-06 55.1 126 30.2
GSVIVG01017355001 Vitis vinifera HOM05D000367 ORTHO05D001438 9.9e-06 55.1 74 36.5


User provided reference genes

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