Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G676 Micromonas commoda HOM05D003970 ORTHO05D004615 1.2e-267 926.0 482 100.0
SalBow1G5979 Salvia bowleyana HOM05D003970 ORTHO05D004615 2.7e-30 137.5 335 30.1
Peaxi162Scf00724g00210 Petunia axillaris HOM05D003970 ORTHO05D004615 3.0e-29 134.0 335 30.4
MELO3C015502.2 Cucumis melo HOM05D003970 ORTHO05D004615 3.9e-29 133.7 355 28.7
CsaV3_1G040740 Cucumis sativus L. HOM05D003970 ORTHO05D004615 3.9e-29 133.7 350 29.4
Migut.L01537 Erythranthe guttata HOM05D003970 ORTHO05D004615 3.9e-29 133.7 331 30.2
MBI05_g23628_MAGBIO Magnolia biondii HOM05D003970 ORTHO05D004615 3.9e-29 133.7 335 30.7
TAR623G1298 Trochodendron aralioides HOM05D003970 ORTHO05D004615 5.1e-29 133.3 335 30.4
TAR636G0030 Trochodendron aralioides HOM05D003970 ORTHO05D004615 8.7e-29 132.5 335 30.4
CiPaw.04G146900 Carya illinoinensis HOM05D003970 ORTHO05D004615 1.9e-28 131.3 334 30.5
Lalb_Chr08g0232451 Lupinus albus HOM05D003970 ORTHO05D004615 2.5e-28 131.0 338 29.9
CDE05G2698 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 7.4e-28 129.4 335 29.0
Manes.16G098400 Manihot esculenta HOM05D003970 ORTHO05D004615 7.4e-28 129.4 335 29.6
Nitab4.5_0001488g0140 Nicotiana tabacum HOM05D003970 ORTHO05D004615 7.4e-28 129.4 335 30.1
AL7G44300 Arabidopsis lyrata HOM05D003970 ORTHO05D004615 1.3e-27 128.6 338 29.9
AT5G35460 Arabidopsis thaliana HOM05D003970 ORTHO05D004615 1.3e-27 128.6 338 29.9
Rhsim05G0013300 Rhododendron simsii HOM05D003970 ORTHO05D004615 1.3e-27 128.6 357 28.9
vmacro06308 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 1.3e-27 128.6 335 29.3
Ca_13142_v3 Cicer arietinum L. HOM05D003970 ORTHO05D004615 1.6e-27 128.3 337 29.1
Ciclev10020772m.g Citrus clementina HOM05D003970 ORTHO05D004615 1.6e-27 128.3 335 29.6
DCAR_024721 Daucus carota HOM05D003970 ORTHO05D004615 1.6e-27 128.3 361 28.5
Nitab4.5_0006849g0020 Nicotiana tabacum HOM05D003970 ORTHO05D004615 1.6e-27 128.3 355 29.0
Sabra18G0047600 Salix brachista HOM05D003970 ORTHO05D004615 1.6e-27 128.3 339 30.7
Pp3c3_9180 Physcomitrium patens HOM05D003970 ORTHO05D004615 2.1e-27 127.9 336 28.3
SGA_v2.0_scaffold23G10060 Striga asiatica HOM05D003970 ORTHO05D004615 2.1e-27 127.9 357 29.1
arahy.Tifrunner.gnm1.ann1.7IK41Y Arachis hypogaea HOM05D003970 ORTHO05D004615 2.8e-27 127.5 349 28.9
HanXRQChr04g0126061 Helianthus annuus HOM05D003970 ORTHO05D004615 2.8e-27 127.5 335 28.1
Lj4A288T21 Lonicera japonica HOM05D003970 ORTHO05D004615 2.8e-27 127.5 332 29.5
Oeu035943.1 Olea europaea HOM05D003970 ORTHO05D004615 2.8e-27 127.5 350 28.6
Sp7g06850 Schrenkiella parvula HOM05D003970 ORTHO05D004615 2.8e-27 127.5 338 29.6
MSTRG.26453 Avicennia marina HOM05D003970 ORTHO05D004615 3.7e-27 127.1 335 28.4
BcaB02g08054 Brassica carinata HOM05D003970 ORTHO05D004615 3.7e-27 127.1 340 28.2
Duzib168G1513 Durio zibethinus HOM05D003970 ORTHO05D004615 3.7e-27 127.1 338 30.2
Nn6g35566 Nelumbo nucifera HOM05D003970 ORTHO05D004615 3.7e-27 127.1 335 29.0
Pp3c2_27340 Physcomitrium patens HOM05D003970 ORTHO05D004615 3.7e-27 127.1 336 28.9
THA.LOC104808900 Tarenaya hassleriana HOM05D003970 ORTHO05D004615 3.7e-27 127.1 337 28.8
Carub.0007s3126 Capsella rubella HOM05D003970 ORTHO05D004615 4.8e-27 126.7 338 29.9
FvH4_1g08120 Fragaria vesca HOM05D003970 ORTHO05D004615 4.8e-27 126.7 335 28.7
FAN19G1405 Fragaria x ananassa HOM05D003970 ORTHO05D004615 4.8e-27 126.7 335 28.7
PGSC0003DMG400020950 Solanum tuberosum HOM05D003970 ORTHO05D004615 4.8e-27 126.7 355 29.0
CAN.G33.23 Capsicum annuum HOM05D003970 ORTHO05D004615 6.2e-27 126.3 374 27.0
Thhalv10003454m.g Eutrema salsugineum HOM05D003970 ORTHO05D004615 6.2e-27 126.3 338 29.0
FAN28G0363 Fragaria x ananassa HOM05D003970 ORTHO05D004615 6.2e-27 126.3 335 29.0
RcHm_v2.0_Chr2g0094171 Rosa chinensis HOM05D003970 ORTHO05D004615 6.2e-27 126.3 335 29.0
arahy.Tifrunner.gnm1.ann1.B9Q4RC Arachis hypogaea HOM05D003970 ORTHO05D004615 8.1e-27 125.9 349 28.9
BcaC02g09478 Brassica carinata HOM05D003970 ORTHO05D004615 8.1e-27 125.9 338 28.7
A04p09740 Brassica napus HOM05D003970 ORTHO05D004615 8.1e-27 125.9 338 28.7
C04p43240 Brassica napus HOM05D003970 ORTHO05D004615 8.1e-27 125.9 338 28.7
BolC4t25903H Brassica oleracea HOM05D003970 ORTHO05D004615 8.1e-27 125.9 338 28.7
BraA04t16636Z Brassica rapa HOM05D003970 ORTHO05D004615 8.1e-27 125.9 338 28.7
Solyc07g041160.3 Solanum lycopersicum HOM05D003970 ORTHO05D004615 8.1e-27 125.9 354 28.8
Sopen07g020420 Solanum pennellii HOM05D003970 ORTHO05D004615 8.1e-27 125.9 354 28.8
Dinv36802 Davidia involucrata HOM05D003970 ORTHO05D004615 1.1e-26 125.6 367 28.6
AUR62025170 Chenopodium quinoa HOM05D003970 ORTHO05D004615 1.4e-26 125.2 336 29.8
Actinidia39693 Actinidia chinensis HOM05D003970 ORTHO05D004615 1.8e-26 124.8 355 29.9
ATR0051G045 Amborella trichopoda HOM05D003970 ORTHO05D004615 1.8e-26 124.8 335 29.0
CARHR217480 Cardamine hirsuta HOM05D003970 ORTHO05D004615 1.8e-26 124.8 338 29.3
AUR62029007 Chenopodium quinoa HOM05D003970 ORTHO05D004615 1.8e-26 124.8 336 30.1
FAN26G0968 Fragaria x ananassa HOM05D003970 ORTHO05D004615 1.8e-26 124.8 335 28.7
Peaxi162Scf00219g00019 Petunia axillaris HOM05D003970 ORTHO05D004615 1.8e-26 124.8 362 29.0
Sabra06G0115100 Salix brachista HOM05D003970 ORTHO05D004615 1.8e-26 124.8 369 27.4
Actinidia25226 Actinidia chinensis HOM05D003970 ORTHO05D004615 2.4e-26 124.4 335 30.1
Eucgr.C03403 Eucalyptus grandis HOM05D003970 ORTHO05D004615 2.4e-26 124.4 337 29.1
Lj7A681T64 Lonicera japonica HOM05D003970 ORTHO05D004615 2.4e-26 124.4 332 28.6
Potri.018G051100 Populus trichocarpa HOM05D003970 ORTHO05D004615 2.4e-26 124.4 339 28.9
PSO210G0448 Papaver somniferum HOM05D003970 ORTHO05D004615 3.1e-26 124.0 337 28.2
PSO210G0608 Papaver somniferum HOM05D003970 ORTHO05D004615 3.1e-26 124.0 337 28.2
Cc06_g11850 Coffea canephora HOM05D003970 ORTHO05D004615 4.0e-26 123.6 351 26.8
DCAR_028283 Daucus carota HOM05D003970 ORTHO05D004615 4.0e-26 123.6 332 28.9
FAN26G2539 Fragaria x ananassa HOM05D003970 ORTHO05D004615 4.0e-26 123.6 332 28.9
TWI32G0099 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 4.0e-26 123.6 366 26.8
Ciclev10010674m.g Citrus clementina HOM05D003970 ORTHO05D004615 5.3e-26 123.2 341 28.4
Migut.J00961 Erythranthe guttata HOM05D003970 ORTHO05D004615 5.3e-26 123.2 347 27.1
FAN23G0579 Fragaria x ananassa HOM05D003970 ORTHO05D004615 5.3e-26 123.2 331 28.4
Glyma.17G051800 Glycine max HOM05D003970 ORTHO05D004615 5.3e-26 123.2 352 28.1
Sed0004197 Sechium edule HOM05D003970 ORTHO05D004615 5.3e-26 123.2 349 27.8
Sc18g0002350 Simmondsia chinensis HOM05D003970 ORTHO05D004615 5.3e-26 123.2 336 29.2
Cfa003038 Carpinus fangiana HOM05D003970 ORTHO05D004615 6.9e-26 122.9 356 27.2
Glyma.13G107500 Glycine max HOM05D003970 ORTHO05D004615 6.9e-26 122.9 331 28.7
vmacro17169 Vaccinium macrocarpon HOM05D003970 ORTHO05D004615 6.9e-26 122.9 337 28.5
EL10Ac8g19144 Beta vulgaris HOM05D003970 ORTHO05D004615 9.0e-26 122.5 356 28.1
Glyma.09G067100 Glycine max HOM05D003970 ORTHO05D004615 9.0e-26 122.5 335 29.0
Glyma.15G173000 Glycine max HOM05D003970 ORTHO05D004615 9.0e-26 122.5 337 28.8
Medtr4g125680 Medicago truncatula HOM05D003970 ORTHO05D004615 9.0e-26 122.5 328 28.0
Atru.chr7.1654 Acer truncatum HOM05D003970 ORTHO05D004615 1.2e-25 122.1 335 28.4
Gohir.A13G192500 Gossypium hirsutum HOM05D003970 ORTHO05D004615 1.2e-25 122.1 373 27.9
Phvul.003G133400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 1.2e-25 122.1 350 28.0
Psat1g133240 Pisum sativum HOM05D003970 ORTHO05D004615 1.2e-25 122.1 335 28.7
Potri.006G145600 Populus trichocarpa HOM05D003970 ORTHO05D004615 1.2e-25 122.1 366 28.1
VMungo1215G1067 Vigna mungo HOM05D003970 ORTHO05D004615 1.2e-25 122.1 349 28.4
Actinidia29916 Actinidia chinensis HOM05D003970 ORTHO05D004615 1.5e-25 121.7 335 28.4
AagrBONN_evm.TU.Sc2ySwM_340.231 Anthoceros agrestis HOM05D003970 ORTHO05D004615 1.5e-25 121.7 351 30.5
Thecc.09G082200 Theobroma cacao HOM05D003970 ORTHO05D004615 1.5e-25 121.7 335 29.3
VMungo1309G1594 Vigna mungo HOM05D003970 ORTHO05D004615 1.5e-25 121.7 351 27.9
Medtr2g040600 Medicago truncatula HOM05D003970 ORTHO05D004615 2.6e-25 120.9 335 28.7
SMO169G0099 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 2.6e-25 120.9 348 27.6
Gohir.D13G197900 Gossypium hirsutum HOM05D003970 ORTHO05D004615 3.4e-25 120.6 373 27.9
Lj4g0010970 Lotus japonicus HOM05D003970 ORTHO05D004615 3.4e-25 120.6 330 29.4
Phvul.009G229400 Phaseolus vulgaris HOM05D003970 ORTHO05D004615 3.4e-25 120.6 335 28.4
Prupe.7G204000 Prunus persica HOM05D003970 ORTHO05D004615 3.4e-25 120.6 332 29.5
TWI34G1861 Tripterygium wilfordii HOM05D003970 ORTHO05D004615 3.4e-25 120.6 372 26.9
QL02p061312 Quercus lobata HOM05D003970 ORTHO05D004615 4.5e-25 120.2 364 27.7
QL02p061443 Quercus lobata HOM05D003970 ORTHO05D004615 4.5e-25 120.2 364 27.7
TPR.G9462 Trifolium pratense HOM05D003970 ORTHO05D004615 5.8e-25 119.8 331 28.1
Lj6g0022796 Lotus japonicus HOM05D003970 ORTHO05D004615 7.6e-25 119.4 335 28.4
Gorai.013G226600 Gossypium raimondii HOM05D003970 ORTHO05D004615 1.0e-24 119.0 375 27.5
Os01g0585100 Oryza sativa ssp. japonica HOM05D003970 ORTHO05D004615 1.0e-24 119.0 335 28.4
arahy.Tifrunner.gnm1.ann1.EC17FL Arachis hypogaea HOM05D003970 ORTHO05D004615 1.3e-24 118.6 356 27.5
Cre03.g207351 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 1.3e-24 118.6 377 28.1
ECA236G0065 Erigeron canadensis HOM05D003970 ORTHO05D004615 1.3e-24 118.6 335 26.9
Lsat_1_v5_gn_5_142140 Lactuca sativa HOM05D003970 ORTHO05D004615 1.3e-24 118.6 332 28.0
Aqoxy7G03992 Aquilegia oxysepala HOM05D003970 ORTHO05D004615 1.7e-24 118.2 357 29.4
Hund08710 Selenicereus undatus HOM05D003970 ORTHO05D004615 1.7e-24 118.2 335 26.9
unitig_26.g9177 Utricularia gibba HOM05D003970 ORTHO05D004615 1.7e-24 118.2 335 27.5
Zm00001eb356980 Zea mays HOM05D003970 ORTHO05D004615 1.7e-24 118.2 335 29.0
CANSAT56G0340 Cannabis sativa HOM05D003970 ORTHO05D004615 2.2e-24 117.9 332 28.6
MD02G1085700 Malus domestica HOM05D003970 ORTHO05D004615 2.2e-24 117.9 335 28.7
CSS0040908 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 2.9e-24 117.5 335 27.5
ECA234G3560 Erigeron canadensis HOM05D003970 ORTHO05D004615 2.9e-24 117.5 332 27.1
Mapoly0061s0008 Marchantia polymorpha HOM05D003970 ORTHO05D004615 2.9e-24 117.5 338 28.7
HanXRQChr10g0319561 Helianthus annuus HOM05D003970 ORTHO05D004615 3.8e-24 117.1 335 27.5
Hma1.2p1_0672F.1_g200850 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 3.8e-24 117.1 335 28.7
PGR044G0734 Punica granatum HOM05D003970 ORTHO05D004615 3.8e-24 117.1 372 26.3
SGA_v2.0_scaffold21G09454 Striga asiatica HOM05D003970 ORTHO05D004615 4.9e-24 116.7 383 27.2
Gohir.A06G074600 Gossypium hirsutum HOM05D003970 ORTHO05D004615 6.5e-24 116.3 337 26.7
TPR.G18106 Trifolium pratense HOM05D003970 ORTHO05D004615 6.5e-24 116.3 348 27.3
Gohir.D06G073400 Gossypium hirsutum HOM05D003970 ORTHO05D004615 8.4e-24 115.9 337 26.7
Gorai.010G085700 Gossypium raimondii HOM05D003970 ORTHO05D004615 1.1e-23 115.5 337 26.7
Lsat_1_v5_gn_8_86281 Lactuca sativa HOM05D003970 ORTHO05D004615 1.1e-23 115.5 358 26.8
Zm00001eb160510 Zea mays HOM05D003970 ORTHO05D004615 1.4e-23 115.2 310 28.4
Aa31sc339G40 Aethionema arabicum HOM05D003970 ORTHO05D004615 2.5e-23 114.4 367 28.1
MD15G1212900 Malus domestica HOM05D003970 ORTHO05D004615 7.1e-23 112.8 335 28.4
SMO271G0136 Selaginella moellendorffii HOM05D003970 ORTHO05D004615 7.1e-23 112.8 343 29.4
CBR_g16039 Chara braunii HOM05D003970 ORTHO05D004615 1.6e-22 111.7 241 32.8
CDE05G3050 Ceratophyllum demersum HOM05D003970 ORTHO05D004615 2.7e-22 110.9 252 32.1
GSVIVG01015145001 Vitis vinifera HOM05D003970 ORTHO05D004615 2.7e-22 110.9 252 32.1
BcaNung06959 Brassica carinata HOM05D003970 ORTHO05D004615 3.5e-22 110.5 300 30.0
HPP92_005531 Vanilla planifolia HOM05D003970 ORTHO05D004615 1.3e-21 108.6 298 28.9
AagrBONN_evm.TU.Sc2ySwM_340.377 Anthoceros agrestis HOM05D003970 ORTHO05D004615 5.1e-21 106.7 239 31.4
ClCG03G015300 Citrullus lanatus HOM05D003970 ORTHO05D004615 5.1e-21 106.7 393 25.7
Cpa.g.sc28.103 Carica papaya HOM05D003970 ORTHO05D004615 6.7e-21 106.3 269 29.4
Duzib150G0174 Durio zibethinus HOM05D003970 ORTHO05D004615 8.7e-21 105.9 252 30.6
Rhsim03G0230700 Rhododendron simsii HOM05D003970 ORTHO05D004615 8.7e-21 105.9 254 31.1
Haze_25957 Corylus avellana HOM05D003970 ORTHO05D004615 3.3e-20 104.0 304 26.3
Gohir.D13G197975 Gossypium hirsutum HOM05D003970 ORTHO05D004615 2.1e-19 101.3 307 30.0
Oeu000306.1 Olea europaea HOM05D003970 ORTHO05D004615 2.1e-19 101.3 332 26.8
TAR624G1217 Trochodendron aralioides HOM05D003970 ORTHO05D004615 2.1e-19 101.3 133 40.6
Ah.14g085030 Amaranthus hybridus HOM05D003970 ORTHO05D004615 3.1e-18 97.4 130 41.5
PGSC0003DMG400019544 Solanum tuberosum HOM05D003970 ORTHO05D004615 7.6e-17 92.8 263 28.9
PRCOL_00002316 Prasinoderma coloniale HOM05D003970 ORTHO05D004615 6.5e-16 89.7 172 30.2
Hma1.2p1_0169F.1_g074770 Hydrangea macrophylla HOM05D003970 ORTHO05D004615 2.5e-15 87.8 350 25.4
Cfa024865 Carpinus fangiana HOM05D003970 ORTHO05D124560 4.2e-15 87.0 118 39.0
Cc02_g26660 Coffea canephora HOM05D003970 ORTHO05D004615 5.5e-15 86.7 144 35.4
BcaB06g26940 Brassica carinata HOM05D003970 ORTHO05D004615 1.6e-14 85.1 336 25.0
RcHm_v2.0_Chr1g0313941 Rosa chinensis HOM05D003970 ORTHO05D004615 2.7e-14 84.3 187 30.5
arahy.Tifrunner.gnm1.ann1.I25TD2 Arachis hypogaea HOM05D003970 ORTHO05D004615 4.3e-12 77.0 355 25.6
Ah.09g231260 Amaranthus hybridus HOM05D003970 ORTHO05D004615 5.7e-12 76.6 98 39.8
PRCOL_00000591 Prasinoderma coloniale HOM05D061371 ORTHO05D049029 6.9e-10 69.7 349 21.8
CSS0012417 Camellia sinensis var. sinensis HOM05D003970 ORTHO05D004615 1.1e-07 62.4 356 22.8
Nitab4.5_0003493g0050 Nicotiana tabacum HOM05D003970 ORTHO05D004615 3.6e-06 57.4 63 46.0
Cre14.g620200 Chlamydomonas reinhardtii HOM05D003970 ORTHO05D004615 4.6e-06 57.0 107 29.0


User provided reference genes

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