Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G661 Micromonas commoda HOM05D003856 ORTHO05D004547 1.8e-142 509.2 259 100.0
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 4.5e-64 248.8 242 50.4
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 1.0e-63 247.7 242 50.4
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 1.3e-63 247.3 242 50.8
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 1.3e-63 247.3 242 50.4
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 1.7e-63 246.9 242 50.4
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 1.7e-63 246.9 242 50.4
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 2.2e-63 246.5 242 50.8
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 3.8e-63 245.7 242 51.2
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 4.9e-63 245.4 243 51.0
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 6.5e-63 245.0 242 50.0
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 6.5e-63 245.0 242 50.0
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 6.5e-63 245.0 242 50.0
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 8.4e-63 244.6 242 49.6
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 8.4e-63 244.6 242 49.6
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 1.1e-62 244.2 241 49.8
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 1.4e-62 243.8 243 50.6
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 1.9e-62 243.4 241 49.8
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 2.5e-62 243.0 249 49.4
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 2.5e-62 243.0 241 49.8
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 3.2e-62 242.7 241 50.6
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 5.5e-62 241.9 242 49.6
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 5.5e-62 241.9 241 50.2
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 5.5e-62 241.9 241 49.8
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 5.5e-62 241.9 242 49.6
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 7.1e-62 241.5 242 50.0
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 9.3e-62 241.1 241 50.6
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 1.2e-61 240.7 242 50.0
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 1.2e-61 240.7 242 50.4
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 1.2e-61 240.7 242 50.4
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 1.6e-61 240.4 241 49.8
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 2.1e-61 240.0 241 49.8
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 2.1e-61 240.0 242 49.6
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 2.1e-61 240.0 241 50.2
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 2.1e-61 240.0 242 49.2
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 2.7e-61 239.6 242 49.6
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 2.7e-61 239.6 241 49.4
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 2.7e-61 239.6 242 50.0
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 2.7e-61 239.6 243 50.2
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 2.7e-61 239.6 242 50.4
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 2.7e-61 239.6 242 50.4
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 2.7e-61 239.6 242 50.4
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 3.5e-61 239.2 241 49.8
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 3.5e-61 239.2 241 49.8
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 3.5e-61 239.2 241 49.8
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 3.5e-61 239.2 242 49.6
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 3.5e-61 239.2 242 49.6
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 4.6e-61 238.8 241 49.8
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 4.6e-61 238.8 241 49.8
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 4.6e-61 238.8 241 49.8
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 4.6e-61 238.8 241 49.8
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 4.6e-61 238.8 241 49.4
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 4.6e-61 238.8 242 50.4
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 6.0e-61 238.4 241 49.0
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 6.0e-61 238.4 241 49.4
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 6.0e-61 238.4 242 49.6
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 6.0e-61 238.4 242 48.8
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 6.0e-61 238.4 248 51.2
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 6.0e-61 238.4 241 50.2
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 7.9e-61 238.0 242 49.6
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 7.9e-61 238.0 242 50.4
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 7.9e-61 238.0 242 50.0
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 7.9e-61 238.0 243 49.4
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 7.9e-61 238.0 241 49.4
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 7.9e-61 238.0 243 49.0
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 1.0e-60 237.7 242 49.6
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 1.0e-60 237.7 242 49.6
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 1.0e-60 237.7 241 49.8
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 1.0e-60 237.7 242 49.6
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 1.0e-60 237.7 241 49.4
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 1.0e-60 237.7 241 48.5
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 1.0e-60 237.7 241 49.8
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 1.3e-60 237.3 241 49.4
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 1.3e-60 237.3 243 49.4
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 1.3e-60 237.3 242 49.2
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 1.3e-60 237.3 242 49.6
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 1.3e-60 237.3 241 49.4
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 1.8e-60 236.9 241 49.4
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 1.8e-60 236.9 241 49.0
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 1.8e-60 236.9 239 50.2
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 2.3e-60 236.5 241 49.8
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 2.3e-60 236.5 241 49.8
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 2.3e-60 236.5 242 49.6
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 2.3e-60 236.5 242 49.6
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 3.0e-60 236.1 241 48.5
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 3.0e-60 236.1 241 49.8
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 3.0e-60 236.1 241 49.0
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 3.0e-60 236.1 241 49.0
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 3.0e-60 236.1 241 49.0
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 3.0e-60 236.1 241 49.0
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 3.0e-60 236.1 241 49.0
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 3.9e-60 235.7 246 48.4
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 3.9e-60 235.7 241 49.4
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 5.1e-60 235.3 241 49.0
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 5.1e-60 235.3 241 49.0
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 5.1e-60 235.3 241 50.2
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 5.1e-60 235.3 242 50.8
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 5.1e-60 235.3 241 48.5
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 5.1e-60 235.3 241 49.0
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 6.7e-60 235.0 243 49.8
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 6.7e-60 235.0 241 48.5
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 6.7e-60 235.0 247 50.2
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 8.7e-60 234.6 242 49.2
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 8.7e-60 234.6 242 49.2
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 8.7e-60 234.6 242 48.8
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 8.7e-60 234.6 247 49.8
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 1.1e-59 234.2 242 49.2
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 1.1e-59 234.2 243 49.4
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 1.5e-59 233.8 242 47.9
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 1.5e-59 233.8 242 47.5
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 1.9e-59 233.4 239 49.0
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 1.9e-59 233.4 239 48.5
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 2.5e-59 233.0 241 50.2
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 2.5e-59 233.0 240 49.2
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 2.5e-59 233.0 241 49.0
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 2.5e-59 233.0 242 48.3
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 2.5e-59 233.0 242 48.3
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 2.5e-59 233.0 242 48.3
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 2.5e-59 233.0 240 48.8
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 3.3e-59 232.6 241 48.5
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 4.3e-59 232.3 240 48.8
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 1.3e-58 230.7 240 47.9
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 1.6e-58 230.3 242 48.8
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 2.8e-58 229.6 241 47.3
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 3.7e-58 229.2 247 48.6
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 5.3e-57 225.3 281 43.1
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 5.3e-57 225.3 242 48.8
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 2.0e-56 223.4 266 45.5
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 3.4e-56 222.6 226 49.6
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 2.9e-55 219.5 245 48.2
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 3.8e-55 219.2 257 45.5
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 6.5e-55 218.4 245 47.3
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 8.5e-55 218.0 209 52.6
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 1.4e-54 217.2 223 48.9
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 3.2e-54 216.1 286 42.3
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 7.2e-54 214.9 217 49.8
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 1.6e-53 213.8 301 40.2
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 4.3e-51 205.7 210 50.5
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 4.3e-51 205.7 210 50.5
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 1.3e-50 204.1 261 42.9
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 8.2e-50 201.4 232 45.3
Haze_26609 Corylus avellana HOM05D003856 ORTHO05D004547 2.6e-48 196.4 232 44.4
Cre09.g400400 Chlamydomonas reinhardtii HOM05D003856 ORTHO05D004547 3.4e-48 196.1 247 44.9
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 1.9e-46 190.3 238 43.3
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 1.4e-44 184.1 192 49.5
Gorai.013G129800 Gossypium raimondii HOM05D003856 ORTHO05D004547 3.9e-44 182.6 241 42.3
Lalb_Chr21g0311231 Lupinus albus HOM05D003856 ORTHO05D004547 9.7e-43 177.9 160 55.6
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 8.2e-42 174.9 159 54.1
CSS0048239 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 3.5e-40 169.5 151 55.6
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 3.2e-38 162.9 175 46.9
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 9.4e-38 161.4 168 47.0
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 1.6e-37 160.6 168 47.0
PRCOL_00006309 Prasinoderma coloniale HOM05D003856 ORTHO05D004547 1.5e-27 127.5 246 36.2
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 1.6e-24 117.5 273 29.3
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 8.5e-23 111.7 135 41.5
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 3.0e-20 103.2 242 32.2
SEGI_31097 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 7.5e-19 98.6 96 53.1
MD10G1332200 Malus domestica HOM05D003856 ORTHO05D004547 3.3e-14 83.2 103 42.7
CSS0021523 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 1.0e-12 78.2 59 64.4
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 4.0e-12 76.3 196 31.6
CBR_g38137 Chara braunii HOM05D003856 ORTHO05D004547 2.0e-11 73.9 105 41.0
C01p16690 Brassica napus HOM05D003856 ORTHO05D004547 3.7e-10 69.7 80 45.0
Lalb_Chr21g0311241 Lupinus albus HOM05D003856 ORTHO05D004547 4.9e-10 69.3 76 40.8
AL649U10020 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 1.0e-07 61.6 75 40.0
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 3.9e-07 59.7 46 65.2
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 7.3e-06 55.5 138 28.3


User provided reference genes

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