Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 3.5e-277 957.6 465 100.0
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 3.9e-143 512.3 432 57.9
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 6.4e-138 495.0 435 55.2
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.1e-137 494.2 435 54.9
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 5.5e-137 491.9 431 54.3
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 2.1e-136 490.0 435 55.9
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.5e-134 483.8 431 55.5
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 5.6e-134 481.9 442 54.1
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 7.4e-134 481.5 442 54.1
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 1.6e-133 480.3 431 54.3
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 2.8e-133 479.6 441 53.5
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.7e-133 479.2 431 54.3
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 4.8e-133 478.8 431 53.8
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 1.1e-132 477.6 431 52.7
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.4e-132 477.2 442 52.5
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.8e-132 476.9 442 52.5
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 6.9e-132 474.9 432 53.5
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 1.2e-131 474.2 443 53.0
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 1.5e-131 473.8 442 53.2
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 1.5e-131 473.8 430 53.5
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 3.4e-131 472.6 432 52.5
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 4.5e-131 472.2 432 52.8
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 4.5e-131 472.2 434 52.8
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 5.8e-131 471.9 430 53.7
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 1.0e-130 471.1 431 53.1
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 1.7e-130 470.3 440 53.2
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 1.7e-130 470.3 432 53.0
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 1.7e-130 470.3 455 51.9
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 1.7e-130 470.3 432 53.5
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 2.2e-130 469.9 431 53.4
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 2.9e-130 469.5 431 53.6
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 2.9e-130 469.5 443 52.8
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 3.8e-130 469.2 440 53.2
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 3.8e-130 469.2 440 53.2
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 3.8e-130 469.2 432 52.5
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 3.8e-130 469.2 432 52.5
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 6.5e-130 468.4 431 53.6
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 6.5e-130 468.4 432 53.2
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.1e-129 467.6 431 52.7
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 1.1e-129 467.6 439 52.8
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 1.4e-129 467.2 449 51.9
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 1.4e-129 467.2 432 53.2
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 1.4e-129 467.2 443 52.1
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.9e-129 466.8 431 52.9
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 1.9e-129 466.8 440 53.0
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 1.9e-129 466.8 446 52.2
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 2.5e-129 466.5 431 53.4
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 3.2e-129 466.1 432 52.8
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 3.2e-129 466.1 432 52.8
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 7.1e-129 464.9 432 52.5
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 7.1e-129 464.9 432 52.5
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 7.1e-129 464.9 432 53.0
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 1.2e-128 464.2 432 53.0
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 1.6e-128 463.8 439 52.4
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.1e-128 463.4 432 52.5
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.1e-128 463.4 432 52.5
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.1e-128 463.4 432 52.8
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 2.7e-128 463.0 452 53.1
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.7e-128 463.0 432 52.8
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 2.7e-128 463.0 432 52.8
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 3.5e-128 462.6 432 52.8
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 3.5e-128 462.6 432 52.8
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 6.0e-128 461.8 431 52.4
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 6.0e-128 461.8 431 52.9
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 6.0e-128 461.8 443 51.7
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 6.0e-128 461.8 432 52.1
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 7.9e-128 461.5 442 50.9
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 7.9e-128 461.5 443 51.2
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 1.0e-127 461.1 439 50.8
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 1.0e-127 461.1 443 51.2
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 1.0e-127 461.1 432 51.6
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 1.0e-127 461.1 434 53.5
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 1.3e-127 460.7 439 51.9
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 1.3e-127 460.7 432 52.5
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 1.8e-127 460.3 446 51.8
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 1.8e-127 460.3 432 51.9
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 2.3e-127 459.9 442 51.6
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.3e-127 459.9 432 52.5
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 3.9e-127 459.1 443 51.5
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 3.9e-127 459.1 431 51.3
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 5.1e-127 458.8 431 52.7
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 8.7e-127 458.0 432 52.3
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 1.1e-126 457.6 432 51.9
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.1e-126 457.6 431 52.4
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 1.5e-126 457.2 442 50.9
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 4.3e-126 455.7 432 51.6
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 5.7e-126 455.3 431 51.5
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 2.1e-125 453.4 431 51.5
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 3.7e-125 452.6 431 51.3
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 1.1e-124 451.1 435 52.0
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 3.1e-124 449.5 432 51.2
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 6.9e-124 448.4 428 52.3
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 1.2e-123 447.6 432 53.2
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 1.5e-123 447.2 431 51.7
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 2.6e-123 446.4 470 47.9
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 3.4e-123 446.0 415 53.0
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 5.9e-123 445.3 432 51.9
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 7.6e-123 444.9 432 52.8
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.0e-122 444.5 444 50.9
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.7e-122 443.7 432 52.1
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.1e-121 441.0 435 51.3
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 9.3e-121 438.0 430 50.9
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 3.5e-120 436.0 412 52.9
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 4.6e-120 435.6 435 52.9
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 5.1e-119 432.2 435 50.3
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 8.7e-119 431.4 514 44.4
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 5.7e-118 428.7 431 49.4
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 2.2e-117 426.8 409 51.8
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 3.7e-117 426.0 401 53.1
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 6.3e-117 425.2 517 44.3
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 1.1e-116 424.5 415 51.3
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 4.1e-116 422.5 398 53.0
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.5e-110 403.3 437 48.7
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 8.5e-106 388.3 432 47.0
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 3.2e-105 386.3 329 59.6
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 5.1e-103 379.0 327 55.0
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 1.1e-102 377.9 342 53.2
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 4.4e-102 375.9 348 56.0
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 2.4e-100 370.2 328 55.8
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.6e-96 357.5 358 50.0
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 1.4e-95 354.4 341 50.1
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.7e-91 340.1 434 44.0
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 2.7e-91 340.1 384 48.4
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 1.3e-90 337.8 286 58.0
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 1.8e-79 300.8 386 42.2
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 3.0e-66 256.9 220 57.7
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 3.9e-66 256.5 244 54.1
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 7.8e-59 232.3 322 40.1
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 5.2e-47 193.0 235 42.1
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 6.8e-47 192.6 184 52.2
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.1e-40 171.0 155 56.1
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.1e-39 167.2 145 56.6
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.3e-37 161.8 135 58.5
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 6.0e-35 152.9 229 41.0
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 2.5e-33 147.5 106 63.2
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 9.0e-31 139.0 147 43.5
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.1e-25 122.1 133 42.9
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 5.6e-25 119.8 109 56.9
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.7e-19 100.9 93 50.5
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 7.9e-19 99.4 83 60.2
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.5e-17 95.1 88 53.4
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.6e-16 91.7 145 42.8
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 2.4e-15 87.8 133 36.1
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 2.9e-13 80.9 60 51.7
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 3.8e-13 80.5 62 59.7
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 7.9e-11 72.8 59 52.5
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 1.8e-10 71.6 67 50.7
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.8e-10 71.6 88 45.5
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 5.7e-09 66.6 57 49.1
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 8.2e-08 62.8 60 45.0
Zm00001eb035260 Zea mays HOM05D002051 ORTHO05D002041 8.2e-08 62.8 273 26.4
COL.COLO4_12209 Corchorus olitorius HOM05D002051 ORTHO05D002041 1.4e-07 62.0 283 27.9
Nn5g28199 Nelumbo nucifera HOM05D002051 ORTHO05D002041 1.8e-07 61.6 281 22.8
AT1G44180 Arabidopsis thaliana HOM05D002051 ORTHO05D002041 3.1e-07 60.8 279 25.8
Cfa015997 Carpinus fangiana HOM05D002051 ORTHO05D002041 2.0e-06 58.2 297 25.3
Ca_05220_v3 Cicer arietinum L. HOM05D002051 ORTHO05D002041 3.4e-06 57.4 286 26.2
Ca_05221_v3 Cicer arietinum L. HOM05D002051 ORTHO05D002041 3.4e-06 57.4 286 26.2
TPR.G27806 Trifolium pratense HOM05D002051 ORTHO05D002041 4.5e-06 57.0 286 25.9
CDE04G1787 Ceratophyllum demersum HOM05D002051 ORTHO05D002041 7.6e-06 56.2 262 25.2
MBI06_g20721_MAGBIO Magnolia biondii HOM05D002051 ORTHO05D002041 7.6e-06 56.2 285 24.2
Haze_00468 Corylus avellana HOM05D002051 ORTHO05D002041 1.0e-05 55.8 387 24.0


User provided reference genes

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