Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G608 Micromonas commoda HOM05D007483 ORTHO05D009133 7.2e-32 139.8 64 100.0
Zm00001eb164460 Zea mays HOM05D007483 ORTHO05D009133 1.2e-18 95.9 64 59.4
RcHm_v2.0_Chr3g0466381 Rosa chinensis HOM05D007483 ORTHO05D009133 1.6e-18 95.5 63 57.1
VMungo0331G1516 Vigna mungo HOM05D007483 ORTHO05D009133 1.6e-18 95.5 64 56.2
FAN09G2152 Fragaria x ananassa HOM05D007483 ORTHO05D009133 2.0e-18 95.1 63 57.1
FAN14G1457 Fragaria x ananassa HOM05D007483 ORTHO05D009133 2.0e-18 95.1 63 57.1
BcaC05g29522 Brassica carinata HOM05D007483 ORTHO05D009133 2.7e-18 94.7 63 58.7
Lsat_1_v5_gn_9_30381 Lactuca sativa HOM05D007483 ORTHO05D009133 2.7e-18 94.7 64 57.8
Lalb_Chr07g0193781 Lupinus albus HOM05D007483 ORTHO05D009133 2.7e-18 94.7 63 55.6
HPP92_019244 Vanilla planifolia HOM05D007483 ORTHO05D009133 2.7e-18 94.7 64 57.8
ECA247G0729 Erigeron canadensis HOM05D001424 ORTHO05D009133 3.5e-18 94.4 64 54.7
Glyma.03G066000 Glycine max HOM05D007483 ORTHO05D009133 3.5e-18 94.4 64 54.7
Phvul.010G011100 Phaseolus vulgaris HOM05D007483 ORTHO05D009133 3.5e-18 94.4 64 56.2
arahy.Tifrunner.gnm1.ann1.29J2UD Arachis hypogaea HOM05D007483 ORTHO05D009133 4.6e-18 94.0 63 55.6
arahy.Tifrunner.gnm1.ann1.A9IP9X Arachis hypogaea HOM05D007483 ORTHO05D009133 4.6e-18 94.0 63 55.6
Duzib093G2195 Durio zibethinus HOM05D007483 ORTHO05D009133 4.6e-18 94.0 63 57.1
Os11g0706100 Oryza sativa ssp. japonica HOM05D007483 ORTHO05D009133 4.6e-18 94.0 64 56.2
Lj3g0014039 Lotus japonicus HOM05D007483 ORTHO05D009133 5.9e-18 93.6 64 56.2
Potri.016G099700 Populus trichocarpa HOM05D007483 ORTHO05D009133 5.9e-18 93.6 63 57.1
Thecc.05G037700 Theobroma cacao HOM05D007483 ORTHO05D009133 5.9e-18 93.6 63 57.1
GSVIVG01034153001 Vitis vinifera HOM05D007483 ORTHO05D009133 5.9e-18 93.6 63 57.1
Aa31LG3G1800 Aethionema arabicum HOM05D007483 ORTHO05D009133 7.8e-18 93.2 63 57.1
AT3G09310 Arabidopsis thaliana HOM05D007483 ORTHO05D009133 7.8e-18 93.2 63 57.1
A05p39660 Brassica napus HOM05D007483 ORTHO05D009133 7.8e-18 93.2 63 57.1
C05p58700 Brassica napus HOM05D007483 ORTHO05D009133 7.8e-18 93.2 63 57.1
BolC5t34519H Brassica oleracea HOM05D007483 ORTHO05D009133 7.8e-18 93.2 63 57.1
BraA05t22748Z Brassica rapa HOM05D007483 ORTHO05D009133 7.8e-18 93.2 63 57.1
CARHR083670 Cardamine hirsuta HOM05D007483 ORTHO05D009133 7.8e-18 93.2 63 57.1
Ca_05061_v3 Cicer arietinum L. HOM05D007483 ORTHO05D009133 7.8e-18 93.2 63 57.1
Cc06_g02530 Coffea canephora HOM05D007483 ORTHO05D009133 7.8e-18 93.2 63 58.7
Dinv35587 Davidia involucrata HOM05D007483 ORTHO05D009133 7.8e-18 93.2 63 57.1
PSO063G2390 Papaver somniferum HOM05D007483 ORTHO05D009133 7.8e-18 93.2 63 54.0
Sp3g07690 Schrenkiella parvula HOM05D007483 ORTHO05D009133 7.8e-18 93.2 63 57.1
BcaC05g29659 Brassica carinata HOM05D007483 ORTHO05D009133 1.0e-17 92.8 63 57.1
Eucgr.A01276 Eucalyptus grandis HOM05D007483 ORTHO05D009133 1.0e-17 92.8 63 55.6
FAN02G3616 Fragaria x ananassa HOM05D007483 ORTHO05D009133 1.0e-17 92.8 63 55.6
Sabra16G0100900 Salix brachista HOM05D007483 ORTHO05D009133 1.0e-17 92.8 63 55.6
THA.LOC104816252 Tarenaya hassleriana HOM05D007483 ORTHO05D009133 1.0e-17 92.8 63 57.1
Aqoxy1G00916 Aquilegia oxysepala HOM05D007483 ORTHO05D009133 1.3e-17 92.4 63 55.6
CiPaw.09G194400 Carya illinoinensis HOM05D007483 ORTHO05D009133 1.3e-17 92.4 63 55.6
MD12G1143600 Malus domestica HOM05D007483 ORTHO05D009133 1.3e-17 92.4 63 58.7
Mapoly0019s0017 Marchantia polymorpha HOM05D007483 ORTHO05D009133 1.3e-17 92.4 64 57.8
Medtr4g021820 Medicago truncatula HOM05D007483 ORTHO05D009133 1.3e-17 92.4 63 57.1
Actinidia13151 Actinidia chinensis HOM05D007483 ORTHO05D009133 1.7e-17 92.0 63 57.1
AL3G20460 Arabidopsis lyrata HOM05D007483 ORTHO05D009133 1.7e-17 92.0 63 55.6
MSTRG.19078 Avicennia marina HOM05D007483 ORTHO05D009133 1.7e-17 92.0 63 57.1
Carub.0003s0842 Capsella rubella HOM05D007483 ORTHO05D009133 1.7e-17 92.0 63 55.6
ClCG04G008120 Citrullus lanatus HOM05D007483 ORTHO05D009133 1.7e-17 92.0 63 54.0
Nn2g13380 Nelumbo nucifera HOM05D007483 ORTHO05D009133 1.7e-17 92.0 63 55.6
HanXRQChr16g0497811 Helianthus annuus HOM05D007483 ORTHO05D009133 2.3e-17 91.7 64 53.1
Sed0013393 Sechium edule HOM05D007483 ORTHO05D009133 2.3e-17 91.7 63 54.0
Cfa016672 Carpinus fangiana HOM05D007483 ORTHO05D009133 3.0e-17 91.3 63 57.1
FAN05G4215 Fragaria x ananassa HOM05D007483 ORTHO05D009133 3.0e-17 91.3 63 55.6
Gohir.A12G221500 Gossypium hirsutum HOM05D007483 ORTHO05D009133 3.0e-17 91.3 63 54.0
Gohir.D12G223900 Gossypium hirsutum HOM05D007483 ORTHO05D009133 3.0e-17 91.3 63 54.0
QL07p048670 Quercus lobata HOM05D007483 ORTHO05D009133 3.0e-17 91.3 63 55.6
AUR62025813 Chenopodium quinoa HOM05D007483 ORTHO05D009133 3.9e-17 90.9 63 54.0
Thhalv10021669m.g Eutrema salsugineum HOM05D007483 ORTHO05D009133 3.9e-17 90.9 63 55.6
SEGI_13406 Sequoiadendron giganteum HOM05D007483 ORTHO05D009133 3.9e-17 90.9 63 57.1
TPR.G7337 Trifolium pratense HOM05D007483 ORTHO05D009133 3.9e-17 90.9 63 57.1
AagrBONN_evm.TU.Sc2ySwM_228.2371 Anthoceros agrestis HOM05D007483 ORTHO05D009133 5.0e-17 90.5 64 56.2
Manes.08G088800 Manihot esculenta HOM05D007483 ORTHO05D009133 6.6e-17 90.1 63 55.6
Nitab4.5_0000216g0380 Nicotiana tabacum HOM05D007483 ORTHO05D009133 6.6e-17 90.1 63 54.0
Oeu007795.1 Olea europaea HOM05D007483 ORTHO05D009133 8.6e-17 89.7 60 56.7
Sopen10g034250 Solanum pennellii HOM05D007483 ORTHO05D009133 8.6e-17 89.7 63 52.4
CAN.G324.11 Capsicum annuum HOM05D007483 ORTHO05D009133 1.1e-16 89.4 63 52.4
Cre17.g720183 Chlamydomonas reinhardtii HOM05D007483 ORTHO05D009133 1.1e-16 89.4 63 55.6
Migut.J00322 Erythranthe guttata HOM05D007483 ORTHO05D009133 1.1e-16 89.4 63 54.0
Pp3c15_21390 Physcomitrium patens HOM05D007483 ORTHO05D009133 1.1e-16 89.4 64 53.1
CANSAT11G2488 Cannabis sativa HOM05D007483 ORTHO05D009133 1.5e-16 89.0 63 54.0
Prupe.6G257100 Prunus persica HOM05D007483 ORTHO05D009133 1.5e-16 89.0 63 55.6
SGA_v2.0_scaffold126G33776 Striga asiatica HOM05D007483 ORTHO05D009133 1.5e-16 89.0 63 58.7
EL10Ac6g14169 Beta vulgaris HOM05D007483 ORTHO05D009133 1.9e-16 88.6 63 52.4
DCAR_028750 Daucus carota HOM05D007483 ORTHO05D009133 4.3e-16 87.4 60 53.3
Solyc10g084810.3 Solanum lycopersicum HOM05D007483 ORTHO05D009133 9.5e-16 86.3 60 51.7
TWI74G0092 Tripterygium wilfordii HOM05D007483 ORTHO05D009133 9.5e-16 86.3 69 49.3
Ah.06g191870 Amaranthus hybridus HOM05D007483 ORTHO05D009133 2.1e-15 85.1 64 51.6
PSO339G1657 Papaver somniferum HOM05D007483 ORTHO05D009133 2.8e-15 84.7 63 52.4
unitig_744.g24653 Utricularia gibba HOM05D000968 ORTHO05D003096 3.6e-15 84.3 63 50.8
Cfa017361 Carpinus fangiana HOM05D007483 ORTHO05D009133 4.7e-15 84.0 68 51.5
CBR_g19672 Chara braunii HOM05D007483 ORTHO05D009133 4.7e-15 84.0 63 52.4
FvH4_6g13510 Fragaria vesca HOM05D007483 ORTHO05D009133 4.7e-15 84.0 53 60.4
Os02g0260400 Oryza sativa ssp. japonica HOM05D007483 ORTHO05D009133 6.2e-15 83.6 53 60.4
Hund10634 Selenicereus undatus HOM05D007483 ORTHO05D009133 6.2e-15 83.6 70 48.6
MBI05_g28376_MAGBIO Magnolia biondii HOM05D007483 ORTHO05D009133 1.4e-14 82.4 57 54.4
Cpa.g.sc169.23 Carica papaya HOM05D007483 ORTHO05D009133 2.3e-14 81.6 57 54.4
Sabra13G0104100 Salix brachista HOM05D007483 ORTHO05D009133 2.3e-14 81.6 57 54.4
TAR636G3143 Trochodendron aralioides HOM05D007483 ORTHO05D009133 2.3e-14 81.6 57 54.4
CsaV3_4G025070 Cucumis sativus L. HOM05D007483 ORTHO05D009133 4.0e-14 80.9 57 52.6
Rhsim04G0158000 Rhododendron simsii HOM05D007483 ORTHO05D009133 5.2e-14 80.5 57 56.1
ATR0559G251 Amborella trichopoda HOM05D007483 ORTHO05D009133 1.5e-13 79.0 56 51.8
PGSC0003DMG400011065 Solanum tuberosum HOM05D007483 ORTHO05D009133 2.0e-13 78.6 57 50.9
Nitab4.5_0000202g0060 Nicotiana tabacum HOM05D007483 ORTHO05D009133 5.8e-13 77.0 55 52.7
MELO3C033192.2 Cucumis melo HOM05D007483 ORTHO05D009133 4.9e-12 73.9 59 50.8
PRCOL_00002574 Prasinoderma coloniale HOM05D007483 ORTHO05D009133 4.9e-12 73.9 65 52.3
Lj2A93G81 Lonicera japonica HOM05D007483 ORTHO05D009133 6.4e-12 73.6 57 50.9
Ciclev10012381m.g Citrus clementina HOM05D007483 ORTHO05D009133 7.0e-11 70.1 51 54.9
SMO165G0096 Selaginella moellendorffii HOM05D007483 ORTHO05D009133 7.0e-11 70.1 53 54.7
Peaxi162Scf00094g01112 Petunia axillaris HOM05D007483 ORTHO05D009133 6.6e-09 63.5 46 52.2
Psat2g094360 Pisum sativum HOM05D007483 ORTHO05D009133 5.2e-06 53.9 35 54.3


User provided reference genes

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