Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G581 Micromonas commoda HOM05D022278 ORTHO05D025870 2.6e-152 542.0 263 100.0
PRCOL_00000990 Prasinoderma coloniale HOM05D022278 ORTHO05D025870 1.8e-36 157.1 215 40.0
PRCOL_00004058 Prasinoderma coloniale HOM05D022278 ORTHO05D025870 4.2e-25 119.4 255 35.3
MCO05G515 Micromonas commoda HOM05D022278 ORTHO05D025870 2.8e-13 80.1 263 30.8
Ciclev10012720m.g Citrus clementina HOM05D002957 ORTHO05D009332 8.4e-10 68.6 162 31.5
AagrBONN_evm.TU.Sc2ySwM_362.2890 Anthoceros agrestis HOM05D005634 ORTHO05D006926 1.9e-09 67.4 177 31.1
Cpa.g.sc3.123 Carica papaya HOM05D005634 ORTHO05D006926 1.9e-09 67.4 160 30.0
Oeu037042.1 Olea europaea HOM05D005634 ORTHO05D006926 2.4e-09 67.0 166 30.1
Lj3A901T75 Lonicera japonica HOM05D005634 ORTHO05D006926 3.2e-09 66.6 150 30.0
HanXRQChr06g0175631 Helianthus annuus HOM05D005634 ORTHO05D006926 5.5e-09 65.9 150 27.3
Lsat_1_v5_gn_8_5560 Lactuca sativa HOM05D005634 ORTHO05D006926 9.3e-09 65.1 167 29.3
CDE11G0057 Ceratophyllum demersum HOM05D005634 ORTHO05D006926 1.2e-08 64.7 161 29.2
MELO3C019382.2 Cucumis melo HOM05D005634 ORTHO05D006926 1.2e-08 64.7 176 27.8
Thecc.05G015700 Theobroma cacao HOM05D002957 ORTHO05D009332 1.6e-08 64.3 154 31.8
Cc02_g01130 Coffea canephora HOM05D005634 ORTHO05D006926 2.1e-08 63.9 150 29.3
CsaV3_3G019650 Cucumis sativus L. HOM05D005634 ORTHO05D006926 2.1e-08 63.9 176 27.8
Manes.01G037500 Manihot esculenta HOM05D005634 ORTHO05D006926 2.1e-08 63.9 166 28.9
Nn1g00367 Nelumbo nucifera HOM05D005634 ORTHO05D006926 2.1e-08 63.9 167 28.1
CDE09G0596 Ceratophyllum demersum HOM05D005634 ORTHO05D006926 2.7e-08 63.5 167 29.3
Ciclev10021946m.g Citrus clementina HOM05D005634 ORTHO05D006926 2.7e-08 63.5 150 28.0
Os09g0530000 Oryza sativa ssp. japonica HOM05D005634 ORTHO05D006926 2.7e-08 63.5 162 31.5
Glyma.04G232400 Glycine max HOM05D005634 ORTHO05D006926 3.5e-08 63.2 160 30.0
MBI12_g30967_MAGBIO Magnolia biondii HOM05D005634 ORTHO05D006926 3.5e-08 63.2 150 28.7
Atru.chr12.2317 Acer truncatum HOM05D005634 ORTHO05D006926 4.6e-08 62.8 166 28.3
Manes.08G092300 Manihot esculenta HOM05D002957 ORTHO05D009332 4.6e-08 62.8 162 30.2
vmacro10142 Vaccinium macrocarpon HOM05D005634 ORTHO05D006926 4.6e-08 62.8 150 28.0
ATR0620G015 Amborella trichopoda HOM05D005634 ORTHO05D006926 6.0e-08 62.4 160 29.4
ECA233G0867 Erigeron canadensis HOM05D005634 ORTHO05D006926 6.0e-08 62.4 166 28.3
PSO782G0763 Papaver somniferum HOM05D005634 ORTHO05D006926 6.0e-08 62.4 149 30.2
Solyc06g053140.3 Solanum lycopersicum HOM05D005634 ORTHO05D006926 6.0e-08 62.4 150 29.3
Sopen06g018200 Solanum pennellii HOM05D005634 ORTHO05D006926 6.0e-08 62.4 150 29.3
Carub.0007s1312 Capsella rubella HOM05D005634 ORTHO05D006926 1.0e-07 61.6 154 29.9
Haze_00263 Corylus avellana HOM05D005634 ORTHO05D006926 1.0e-07 61.6 150 28.0
Glyma.06G132600 Glycine max HOM05D005634 ORTHO05D006926 1.0e-07 61.6 160 29.4
Lj3g0019800 Lotus japonicus HOM05D002957 ORTHO05D009332 1.0e-07 61.6 163 31.3
Oeu034563.1 Olea europaea HOM05D002957 ORTHO05D009332 1.0e-07 61.6 154 30.5
EL10Ac3g05237 Beta vulgaris HOM05D005634 ORTHO05D006926 1.3e-07 61.2 166 27.7
CDE07G1950 Ceratophyllum demersum HOM05D002957 ORTHO05D009332 1.3e-07 61.2 174 29.9
Glyma.14G118100 Glycine max HOM05D005634 ORTHO05D006926 1.3e-07 61.2 150 30.0
Medtr3g092040 Medicago truncatula HOM05D005634 ORTHO05D006926 1.3e-07 61.2 166 27.7
Oeu061008.1 Olea europaea HOM05D005634 ORTHO05D006926 1.3e-07 61.2 238 26.1
Rhsim09G0207900 Rhododendron simsii HOM05D005634 ORTHO05D006926 1.3e-07 61.2 153 27.5
VMungo1309G1289 Vigna mungo HOM05D005634 ORTHO05D006926 1.3e-07 61.2 160 28.8
GSVIVG01038606001 Vitis vinifera HOM05D005634 ORTHO05D006926 1.3e-07 61.2 150 28.7
Ca_16737_v3 Cicer arietinum L. HOM05D005634 ORTHO05D006926 1.8e-07 60.8 166 28.3
Duzib084G0100 Durio zibethinus HOM05D005634 ORTHO05D006926 1.8e-07 60.8 150 28.7
Lsat_1_v5_gn_5_150440 Lactuca sativa HOM05D002957 ORTHO05D009332 1.8e-07 60.8 154 29.2
Lj3A953T52 Lonicera japonica HOM05D002957 ORTHO05D009332 1.8e-07 60.8 154 30.5
MD01G1225500 Malus domestica HOM05D005634 ORTHO05D006926 1.8e-07 60.8 166 27.7
AL7G24960 Arabidopsis lyrata HOM05D005634 ORTHO05D006926 2.3e-07 60.5 144 29.9
AT4G27700 Arabidopsis thaliana HOM05D005634 ORTHO05D006926 2.3e-07 60.5 144 29.9
CSS0047779 Camellia sinensis var. sinensis HOM05D005634 ORTHO05D006926 2.3e-07 60.5 150 28.0
Duzib093G1190 Durio zibethinus HOM05D002957 ORTHO05D009332 2.3e-07 60.5 153 28.8
ECA248G0294 Erigeron canadensis HOM05D002957 ORTHO05D009332 2.3e-07 60.5 174 28.2
Lalb_Chr11g0067121 Lupinus albus HOM05D005634 ORTHO05D006926 2.3e-07 60.5 150 26.7
PGR142G2679 Punica granatum HOM05D005634 ORTHO05D006926 2.3e-07 60.5 166 28.3
Sabra15G0006100 Salix brachista HOM05D005634 ORTHO05D006926 2.3e-07 60.5 150 28.0
Sed0006401 Sechium edule HOM05D002957 ORTHO05D009332 2.3e-07 60.5 147 32.7
DCAR_014553 Daucus carota HOM05D005634 ORTHO05D006926 3.0e-07 60.1 149 30.2
Potri.015G008000 Populus trichocarpa HOM05D005634 ORTHO05D006926 3.0e-07 60.1 150 28.0
Thecc.03G204700 Theobroma cacao HOM05D005634 ORTHO05D006926 3.0e-07 60.1 150 28.0
FAN10G1744 Fragaria x ananassa HOM05D005634 ORTHO05D006926 3.9e-07 59.7 166 27.7
QL09p007605 Quercus lobata HOM05D005634 ORTHO05D006926 3.9e-07 59.7 150 28.0
PGSC0003DMG400005464 Solanum tuberosum HOM05D005634 ORTHO05D006926 3.9e-07 59.7 150 27.3
CANSAT35G0815 Cannabis sativa HOM05D002957 ORTHO05D009332 5.1e-07 59.3 147 32.0
HanXRQChr01g0006141 Helianthus annuus HOM05D002957 ORTHO05D009332 5.1e-07 59.3 159 29.6
Potri.006G100600 Populus trichocarpa HOM05D002957 ORTHO05D009332 5.1e-07 59.3 138 30.4
BcaC05g29625 Brassica carinata HOM05D002957 ORTHO05D009332 6.7e-07 58.9 204 27.9
C05p58970 Brassica napus HOM05D002957 ORTHO05D009332 6.7e-07 58.9 204 27.9
Nitab4.5_0000015g0180 Nicotiana tabacum HOM05D005634 ORTHO05D006926 6.7e-07 58.9 149 26.8
Phvul.009G048400 Phaseolus vulgaris HOM05D005634 ORTHO05D006926 6.7e-07 58.9 150 28.0
Prupe.2G315600 Prunus persica HOM05D005634 ORTHO05D006926 6.7e-07 58.9 150 26.7
SalBow4G1390 Salvia bowleyana HOM05D005634 ORTHO05D006926 6.7e-07 58.9 150 28.0
arahy.Tifrunner.gnm1.ann1.P45MK1 Arachis hypogaea HOM05D005634 ORTHO05D006926 8.7e-07 58.5 150 26.7
Gohir.A09G165400 Gossypium hirsutum HOM05D002957 ORTHO05D009332 8.7e-07 58.5 154 29.9
Lj1g0021546 Lotus japonicus HOM05D005634 ORTHO05D006926 8.7e-07 58.5 166 27.7
arahy.Tifrunner.gnm1.ann1.WWF9U9 Arachis hypogaea HOM05D005634 ORTHO05D006926 1.1e-06 58.2 150 26.7
CBR_g51265 Chara braunii HOM05D005634 ORTHO05D006926 1.1e-06 58.2 136 33.1
Cre01.g003550 Chlamydomonas reinhardtii HOM05D005634 ORTHO05D006926 1.1e-06 58.2 158 29.1
Haze_21005 Corylus avellana HOM05D002957 ORTHO05D009332 1.1e-06 58.2 154 29.9
Gohir.D09G161000 Gossypium hirsutum HOM05D002957 ORTHO05D009332 1.1e-06 58.2 154 29.9
Gorai.006G182700 Gossypium raimondii HOM05D002957 ORTHO05D009332 1.1e-06 58.2 154 29.9
THA.LOC104823296 Tarenaya hassleriana HOM05D002957 ORTHO05D009332 1.1e-06 58.2 145 29.7
TWI39G0994 Tripterygium wilfordii HOM05D005634 ORTHO05D006926 1.1e-06 58.2 160 28.1
BcaNung01637 Brassica carinata HOM05D005634 ORTHO05D006926 1.5e-06 57.8 144 29.2
Psat5g074680 Pisum sativum HOM05D005634 ORTHO05D006926 1.5e-06 57.8 166 27.1
unitig_8.g3227 Utricularia gibba HOM05D002957 ORTHO05D009332 1.5e-06 57.8 155 31.0
GSVIVG01011156001 Vitis vinifera HOM05D002957 ORTHO05D009332 1.5e-06 57.8 154 31.2
Ah.07g205160 Amaranthus hybridus HOM05D005634 ORTHO05D006926 1.9e-06 57.4 150 27.3
Aqoxy5G04258 Aquilegia oxysepala HOM05D005634 ORTHO05D006926 1.9e-06 57.4 150 26.7
A05p39930 Brassica napus HOM05D002957 ORTHO05D009332 1.9e-06 57.4 163 28.8
BraA01t01856Z Brassica rapa HOM05D005634 ORTHO05D006926 1.9e-06 57.4 226 28.3
BraSC256t45931Z Brassica rapa HOM05D002957 ORTHO05D009332 1.9e-06 57.4 163 28.8
COL.COLO4_14532 Corchorus olitorius HOM05D002957 ORTHO05D009332 1.9e-06 57.4 154 29.2
Eucgr.K02980 Eucalyptus grandis HOM05D002957 ORTHO05D009332 1.9e-06 57.4 154 29.2
Mapoly0050s0021 Marchantia polymorpha HOM05D005634 ORTHO05D006926 1.9e-06 57.4 167 26.3
BcaC09g50547 Brassica carinata HOM05D005634 ORTHO05D006926 2.5e-06 57.0 226 28.3
C01p24050 Brassica napus HOM05D005634 ORTHO05D006926 2.5e-06 57.0 226 28.3
BolC1t02361H Brassica oleracea HOM05D005634 ORTHO05D006926 2.5e-06 57.0 226 28.3
Cfa016192 Carpinus fangiana HOM05D005634 ORTHO05D006926 2.5e-06 57.0 150 26.7
Thhalv10021504m.g Eutrema salsugineum HOM05D002957 ORTHO05D009332 2.5e-06 57.0 163 28.2
Gorai.004G122200 Gossypium raimondii HOM05D005634 ORTHO05D006926 2.5e-06 57.0 150 27.3
QL07p019780 Quercus lobata HOM05D002957 ORTHO05D009332 2.5e-06 57.0 163 28.8
Sabra06G0077400 Salix brachista HOM05D002957 ORTHO05D009332 2.5e-06 57.0 137 29.2
Sp7g25680 Schrenkiella parvula HOM05D005634 ORTHO05D006926 2.5e-06 57.0 141 29.1
vmacro20279 Vaccinium macrocarpon HOM05D002957 ORTHO05D009332 2.5e-06 57.0 142 29.6
CSS0035001 Camellia sinensis var. sinensis HOM05D002957 ORTHO05D009332 4.3e-06 56.2 142 29.6
CAN.G414.9 Capsicum annuum HOM05D005634 ORTHO05D006926 4.3e-06 56.2 149 26.8
AUR62035571 Chenopodium quinoa HOM05D005634 ORTHO05D006926 4.3e-06 56.2 150 27.3
Lalb_Chr08g0239991 Lupinus albus HOM05D005634 ORTHO05D006926 4.3e-06 56.2 149 27.5
Nitab4.5_0001829g0010 Nicotiana tabacum HOM05D005634 ORTHO05D006926 4.3e-06 56.2 149 26.2
arahy.Tifrunner.gnm1.ann1.A2UBGC Arachis hypogaea HOM05D002957 ORTHO05D009332 5.6e-06 55.8 142 31.0
Thhalv10026171m.g Eutrema salsugineum HOM05D005634 ORTHO05D006926 5.6e-06 55.8 226 28.3
FAN01G0994 Fragaria x ananassa HOM05D005634 ORTHO05D006926 5.6e-06 55.8 166 27.7
MD07G1296000 Malus domestica HOM05D005634 ORTHO05D006926 5.6e-06 55.8 166 26.5
SGA_v2.0_scaffold18G08443 Striga asiatica HOM05D002361 ORTHO05D006926 5.6e-06 55.8 150 28.7
TAR629G3370 Trochodendron aralioides HOM05D005634 ORTHO05D006926 5.6e-06 55.8 160 28.1
Actinidia18672 Actinidia chinensis HOM05D005634 ORTHO05D006926 9.6e-06 55.1 149 26.2
SalBow5G1577 Salvia bowleyana HOM05D002957 ORTHO05D009332 9.6e-06 55.1 154 29.9


User provided reference genes

Program Settings