Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 3.4e-128 461.8 262 100.0
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 9.5e-38 161.4 150 66.7
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 2.0e-35 153.7 254 44.9
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 8.3e-26 121.7 264 37.9
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 3.2e-25 119.8 258 37.6
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 4.1e-25 119.4 266 36.5
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 7.1e-25 118.6 264 36.7
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 9.2e-25 118.2 258 36.0
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 1.2e-24 117.9 256 35.9
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.2e-24 117.9 255 37.3
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.6e-24 117.5 258 36.8
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 2.1e-24 117.1 258 36.4
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 2.1e-24 117.1 258 37.2
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 2.1e-24 117.1 256 35.9
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.7e-24 116.7 258 36.8
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 2.7e-24 116.7 258 36.8
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 2.7e-24 116.7 264 37.5
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 2.7e-24 116.7 258 37.2
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 3.5e-24 116.3 258 36.0
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 3.5e-24 116.3 264 36.4
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 3.5e-24 116.3 264 34.8
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 3.5e-24 116.3 264 35.2
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 3.5e-24 116.3 264 35.6
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 4.6e-24 115.9 264 36.0
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 4.6e-24 115.9 258 36.8
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 4.6e-24 115.9 264 36.4
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 6.0e-24 115.5 264 36.7
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 6.0e-24 115.5 253 37.5
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 7.8e-24 115.2 264 36.0
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.0e-23 114.8 259 37.1
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.0e-23 114.8 259 37.1
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.0e-23 114.8 258 36.4
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 1.3e-23 114.4 257 36.2
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.3e-23 114.4 258 36.0
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.3e-23 114.4 263 34.6
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.3e-23 114.4 263 35.7
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.3e-23 114.4 258 36.8
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 1.7e-23 114.0 258 36.8
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 1.7e-23 114.0 258 36.0
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 1.7e-23 114.0 258 36.0
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 2.3e-23 113.6 262 34.7
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 2.3e-23 113.6 257 35.4
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 2.3e-23 113.6 258 36.4
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.3e-23 113.6 258 36.0
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 2.3e-23 113.6 264 35.6
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 2.3e-23 113.6 264 35.6
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 2.3e-23 113.6 264 36.0
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 3.0e-23 113.2 258 36.0
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 3.0e-23 113.2 258 36.0
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.0e-23 113.2 258 36.0
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.9e-23 112.8 258 36.0
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 3.9e-23 112.8 253 37.2
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 3.9e-23 112.8 258 36.4
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 5.1e-23 112.5 257 36.6
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 6.6e-23 112.1 259 36.7
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 6.6e-23 112.1 259 36.7
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 6.6e-23 112.1 256 35.2
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 8.6e-23 111.7 257 36.2
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 8.6e-23 111.7 257 36.2
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 8.6e-23 111.7 265 35.8
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 8.6e-23 111.7 259 35.5
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.1e-22 111.3 259 35.9
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 1.1e-22 111.3 258 36.0
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 1.1e-22 111.3 258 36.0
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 1.9e-22 110.5 253 35.2
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 2.5e-22 110.2 258 35.3
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 2.5e-22 110.2 258 35.7
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 3.3e-22 109.8 265 33.6
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 5.6e-22 109.0 258 34.5
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 5.6e-22 109.0 263 34.2
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 5.6e-22 109.0 258 36.0
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 7.3e-22 108.6 258 34.9
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 1.2e-21 107.8 263 37.3
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 1.2e-21 107.8 257 35.8
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 4.7e-21 105.9 257 35.0
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 4.7e-21 105.9 266 36.1
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 6.2e-21 105.5 252 36.5
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 6.2e-21 105.5 263 33.8
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 8.1e-21 105.1 256 35.2
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 8.1e-21 105.1 263 35.0
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.1e-20 104.8 258 36.0
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 1.1e-20 104.8 257 34.6
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 1.8e-20 104.0 257 35.4
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 2.4e-20 103.6 258 30.2
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 3.1e-20 103.2 252 36.1
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 5.2e-20 102.4 255 33.7
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 6.8e-20 102.1 252 36.1
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 8.9e-20 101.7 260 35.0
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 1.2e-19 101.3 258 34.5
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 1.5e-19 100.9 256 36.3
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 1.5e-19 100.9 274 27.4
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 1.5e-19 100.9 266 33.5
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 2.0e-19 100.5 259 35.1
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 2.6e-19 100.1 287 33.1
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 5.8e-19 99.0 251 33.1
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 5.8e-19 99.0 266 35.7
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 7.6e-19 98.6 256 27.7
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 7.6e-19 98.6 263 31.2
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 1.7e-18 97.4 262 36.6
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 1.7e-18 97.4 250 33.2
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 2.9e-18 96.7 249 35.3
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 6.4e-18 95.5 308 30.2
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 8.4e-18 95.1 218 39.4
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 1.4e-17 94.4 246 33.7
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 1.4e-17 94.4 267 34.1
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 9.3e-17 91.7 303 32.3
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 9.3e-17 91.7 255 27.5
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 1.2e-16 91.3 248 26.6
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 1.6e-16 90.9 224 38.4
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 2.7e-16 90.1 311 24.8
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 3.5e-16 89.7 299 30.1
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 6.0e-16 89.0 272 30.9
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 3.9e-15 86.3 275 31.3
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 1.5e-14 84.3 217 35.0
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 2.5e-14 83.6 304 25.3
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 3.3e-14 83.2 231 34.6
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 3.3e-14 83.2 231 34.6
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 1.6e-13 80.9 264 31.8
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 3.6e-13 79.7 151 37.1
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 4.8e-13 79.3 217 34.1
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.8e-12 77.4 264 31.4
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 2.4e-12 77.0 218 35.3
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 4.0e-12 76.3 313 30.0
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 1.2e-11 74.7 142 31.7
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 1.2e-11 74.7 142 31.0
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 7.6e-11 72.0 151 41.7
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 2.4e-09 67.0 151 35.1
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 4.2e-09 66.2 163 30.7
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 4.2e-09 66.2 145 32.4
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 9.3e-09 65.1 190 37.9
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 9.3e-09 65.1 140 32.9
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 1.2e-08 64.7 147 38.8
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 3.0e-07 60.1 86 37.2
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 3.0e-07 60.1 157 33.1
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 6.6e-07 58.9 91 36.3
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 3.3e-06 56.6 175 34.9
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 5.6e-06 55.8 219 24.2


User provided reference genes

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