Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G467 Micromonas commoda HOM05D005251 ORTHO05D006680 7.6e-225 783.5 392 100.0
PRCOL_00000275 Prasinoderma coloniale HOM05D005251 ORTHO05D006680 2.4e-61 240.4 462 35.3
Cre07.g338900 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 1.8e-53 214.2 451 34.1
BcaB08g36046 Brassica carinata HOM05D005251 ORTHO05D006680 4.4e-47 193.0 405 32.8
Sp6g18620 Schrenkiella parvula HOM05D005251 ORTHO05D006680 1.3e-46 191.4 395 32.7
Thhalv10013022m.g Eutrema salsugineum HOM05D005251 ORTHO05D006680 2.2e-46 190.7 395 31.9
A10p14170 Brassica napus HOM05D005251 ORTHO05D006680 4.9e-46 189.5 405 32.3
BraA10t43510Z Brassica rapa HOM05D005251 ORTHO05D006680 4.9e-46 189.5 405 32.3
BcaC04g20043 Brassica carinata HOM05D005251 ORTHO05D006680 8.3e-46 188.7 405 32.6
C09p48540 Brassica napus HOM05D005251 ORTHO05D006680 8.3e-46 188.7 405 32.6
BolC9t57695H Brassica oleracea HOM05D005251 ORTHO05D006680 8.3e-46 188.7 405 32.6
CARHR270650 Cardamine hirsuta HOM05D005251 ORTHO05D006680 7.0e-45 185.7 399 32.8
AT5G56900 Arabidopsis thaliana HOM05D005251 ORTHO05D006680 9.2e-45 185.3 399 32.6
Carub.0008s1736 Capsella rubella HOM05D005251 ORTHO05D006680 1.2e-44 184.9 399 32.6
MSTRG.10560 Avicennia marina HOM05D005251 ORTHO05D006680 1.6e-44 184.5 405 31.6
AL8G32750 Arabidopsis lyrata HOM05D005251 ORTHO05D006680 2.7e-44 183.7 399 32.3
Aa31LG3G12780 Aethionema arabicum HOM05D005251 ORTHO05D006680 1.0e-43 181.8 405 31.9
THA.LOC104817759 Tarenaya hassleriana HOM05D005251 ORTHO05D006680 2.5e-42 177.2 401 30.4
Mapoly0009s0116 Marchantia polymorpha HOM05D005251 ORTHO05D006680 7.3e-42 175.6 442 31.2
Ah.09g228240 Amaranthus hybridus HOM05D005251 ORTHO05D006680 1.6e-41 174.5 407 31.0
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 4.7e-41 172.9 436 30.7
SMO273G0018 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 8.1e-41 172.2 422 32.7
SMO147G0126 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 1.1e-40 171.8 422 32.7
MBI04_g31157_MAGBIO Magnolia biondii HOM05D005251 ORTHO05D006680 4.0e-40 169.9 406 29.8
AUR62033961 Chenopodium quinoa HOM05D005251 ORTHO05D006680 8.9e-40 168.7 404 29.2
Ciclev10010506m.g Citrus clementina HOM05D005251 ORTHO05D006680 8.9e-40 168.7 404 31.2
Eucgr.C00887 Eucalyptus grandis HOM05D005251 ORTHO05D006680 8.9e-40 168.7 408 31.1
CANSAT56G1459 Cannabis sativa HOM05D005251 ORTHO05D006680 1.2e-39 168.3 409 30.3
COL.COLO4_18196 Corchorus olitorius HOM05D005251 ORTHO05D006680 1.5e-39 167.9 406 30.8
Os09g0364000 Oryza sativa ssp. japonica HOM05D005251 ORTHO05D006680 2.0e-39 167.5 401 31.2
EL10Ac8g19209 Beta vulgaris HOM05D005251 ORTHO05D006680 2.6e-39 167.2 405 29.6
CiPaw.03G215300 Carya illinoinensis HOM05D005251 ORTHO05D006680 2.6e-39 167.2 422 28.7
TWI34G0442 Tripterygium wilfordii HOM05D005251 ORTHO05D006680 4.4e-39 166.4 419 31.0
PGR142G3350 Punica granatum HOM05D005251 ORTHO05D006680 9.9e-39 165.2 409 30.8
CAN.G1241.24 Capsicum annuum HOM05D005251 ORTHO05D006680 1.3e-38 164.9 409 29.3
Thecc.09G088600 Theobroma cacao HOM05D005251 ORTHO05D006680 2.2e-38 164.1 404 30.2
Cc06_g11450 Coffea canephora HOM05D005251 ORTHO05D006680 3.7e-38 163.3 408 29.4
CsaV3_1G040480 Cucumis sativus L. HOM05D005251 ORTHO05D006680 4.9e-38 162.9 414 29.0
Manes.03G034200 Manihot esculenta HOM05D005251 ORTHO05D006680 6.4e-38 162.5 410 29.0
AUR62029068 Chenopodium quinoa HOM05D005251 ORTHO05D006680 1.1e-37 161.8 405 29.4
Dinv36771 Davidia involucrata HOM05D005251 ORTHO05D006680 1.9e-37 161.0 426 28.6
Migut.L01497 Erythranthe guttata HOM05D005251 ORTHO05D006680 3.2e-37 160.2 409 28.6
GSVIVG01015197001 Vitis vinifera HOM05D005251 ORTHO05D006680 4.1e-37 159.8 404 29.0
Gohir.A06G072900 Gossypium hirsutum HOM05D005251 ORTHO05D006680 5.4e-37 159.5 410 29.0
Lsat_1_v5_gn_8_87701 Lactuca sativa HOM05D005251 ORTHO05D006680 5.4e-37 159.5 400 30.5
Potri.006G152100 Populus trichocarpa HOM05D005251 ORTHO05D006680 7.1e-37 159.1 411 29.2
MELO3C015476.2 Cucumis melo HOM05D005251 ORTHO05D006680 9.2e-37 158.7 414 28.5
PGSC0003DMG400000278 Solanum tuberosum HOM05D005251 ORTHO05D006680 9.2e-37 158.7 409 29.8
ClCG03G015560 Citrullus lanatus HOM05D005251 ORTHO05D006680 1.2e-36 158.3 420 27.9
SGA_v2.0_scaffold21G09390 Striga asiatica HOM05D005251 ORTHO05D006680 1.6e-36 157.9 406 28.8
Prupe.7G209200 Prunus persica HOM05D005251 ORTHO05D006680 2.7e-36 157.1 408 27.7
vmacro17241 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 2.7e-36 157.1 409 29.1
Gorai.010G083200 Gossypium raimondii HOM05D005251 ORTHO05D006680 6.0e-36 156.0 406 29.6
HanXRQChr06g0178551 Helianthus annuus HOM05D005251 ORTHO05D006680 6.0e-36 156.0 398 28.9
FAN19G0073 Fragaria x ananassa HOM05D005251 ORTHO05D006680 6.6e-35 152.5 404 28.7
FvH4_1g07540 Fragaria vesca HOM05D005251 ORTHO05D006680 8.6e-35 152.1 404 28.7
RcHm_v2.0_Chr2g0093421 Rosa chinensis HOM05D005251 ORTHO05D006680 8.6e-35 152.1 404 28.2
TAR624G0724 Trochodendron aralioides HOM05D005251 ORTHO05D006680 8.6e-35 152.1 412 27.9
Glyma.13G104400 Glycine max HOM05D005251 ORTHO05D006680 1.9e-34 151.0 406 27.8
Oeu018416.2 Olea europaea HOM05D005251 ORTHO05D006680 1.9e-34 151.0 414 29.2
AagrBONN_evm.TU.Sc2ySwM_228.1764 Anthoceros agrestis HOM05D005251 ORTHO05D006680 4.3e-34 149.8 373 30.0
FAN23G1060 Fragaria x ananassa HOM05D005251 ORTHO05D006680 4.3e-34 149.8 405 28.6
Lj4A303G24 Lonicera japonica HOM05D005251 ORTHO05D006680 7.3e-34 149.1 421 27.8
Cpa.g.sc61.41 Carica papaya HOM05D005251 ORTHO05D006680 1.2e-33 148.3 394 28.7
Sabra06G0120400 Salix brachista HOM05D005251 ORTHO05D006680 1.6e-33 147.9 403 28.5
Cfa003082 Carpinus fangiana HOM05D005251 ORTHO05D006680 2.1e-33 147.5 416 27.2
Aqoxy7G04044 Aquilegia oxysepala HOM05D005251 ORTHO05D006680 2.8e-33 147.1 402 26.1
CSS0048193 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 2.8e-33 147.1 408 28.7
MD15G1207600 Malus domestica HOM05D005251 ORTHO05D006680 2.8e-33 147.1 397 28.7
CSS0047543 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 3.6e-33 146.7 408 28.7
FAN26G1479 Fragaria x ananassa HOM05D005251 ORTHO05D006680 6.2e-33 146.0 422 28.4
FAN26G3339 Fragaria x ananassa HOM05D005251 ORTHO05D006680 1.1e-32 145.2 422 28.4
Nn8g38856 Nelumbo nucifera HOM05D005251 ORTHO05D006680 1.1e-32 145.2 414 27.5
Rhsim05G0020500 Rhododendron simsii HOM05D005251 ORTHO05D006680 1.4e-32 144.8 412 28.2
Actinidia39715 Actinidia chinensis HOM05D005251 ORTHO05D006680 1.8e-32 144.4 415 28.4
FAN28G0072 Fragaria x ananassa HOM05D005251 ORTHO05D006680 1.8e-32 144.4 410 28.3
Phvul.003G136700 Phaseolus vulgaris HOM05D005251 ORTHO05D006680 2.4e-32 144.1 400 29.2
VMungo1215G2738 Vigna mungo HOM05D005251 ORTHO05D006680 3.1e-32 143.7 412 27.4
MD02G1080200 Malus domestica HOM05D005251 ORTHO05D006680 4.0e-32 143.3 413 26.9
Zm00001eb311020 Zea mays HOM05D005251 ORTHO05D006680 8.9e-32 142.1 214 37.9
Gohir.D06G071400 Gossypium hirsutum HOM05D005251 ORTHO05D006680 2.6e-31 140.6 448 27.2
PSO210G1153 Papaver somniferum HOM05D005251 ORTHO05D006680 2.6e-31 140.6 394 26.6
Peaxi162Scf00498g00321 Petunia axillaris HOM05D005251 ORTHO05D006680 2.6e-31 140.6 407 28.0
Medtr4g126260 Medicago truncatula HOM05D005251 ORTHO05D006680 3.4e-31 140.2 417 25.7
PSO210G7113 Papaver somniferum HOM05D005251 ORTHO05D006680 3.4e-31 140.2 400 26.5
Atru.BG.14.p Acer truncatum HOM05D005251 ORTHO05D006680 7.6e-31 139.0 408 28.9
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 7.6e-31 139.0 381 26.5
arahy.Tifrunner.gnm1.ann1.Y01GTZ Arachis hypogaea HOM05D005251 ORTHO05D006680 9.9e-31 138.7 405 27.4
Lalb_Chr12g0199791 Lupinus albus HOM05D005251 ORTHO05D006680 2.9e-30 137.1 406 26.6
Lj4g0006207 Lotus japonicus HOM05D005251 ORTHO05D006680 3.8e-30 136.7 412 26.7
Nitab4.5_0000540g0310 Nicotiana tabacum HOM05D005251 ORTHO05D006680 1.1e-29 135.2 357 28.6
CBR_g54012 Chara braunii HOM05D005251 ORTHO05D006680 2.4e-29 134.0 518 25.1
Haze_25916 Corylus avellana HOM05D005251 ORTHO05D006680 2.4e-29 134.0 411 26.8
Solyc12g008870.1 Solanum lycopersicum HOM05D005251 ORTHO05D006680 2.4e-29 134.0 212 34.9
QL02p062545 Quercus lobata HOM05D005251 ORTHO05D006680 4.1e-29 133.3 378 28.0
Sopen12g003800 Solanum pennellii HOM05D005251 ORTHO05D006680 5.4e-29 132.9 212 34.9
Duzib150G0576 Durio zibethinus HOM05D005251 ORTHO05D006680 7.1e-29 132.5 378 27.0
TPR.G9472 Trifolium pratense HOM05D005251 ORTHO05D006680 9.2e-29 132.1 409 26.4
Atru.chr7.1595 Acer truncatum HOM05D005251 ORTHO05D006680 2.1e-28 131.0 212 33.5
Ca_21279_v3 Cicer arietinum L. HOM05D005251 ORTHO05D006680 8.6e-27 125.6 387 27.6
Sc18g0002110 Simmondsia chinensis HOM05D005251 ORTHO05D006680 3.3e-26 123.6 320 28.8
ATR0789G159 Amborella trichopoda HOM05D005251 ORTHO05D006680 1.4e-24 118.2 214 30.8
Cre07.g338800 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 1.5e-23 114.8 182 37.4
Cre07.g338700 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 1.7e-22 111.3 142 42.3
Psat4g015200 Pisum sativum HOM05D005251 ORTHO05D006680 1.4e-21 108.2 314 28.3
Glyma.17G054700 Glycine max HOM05D005251 ORTHO05D006680 3.2e-21 107.1 304 28.0
unitig_8.g4690 Utricularia gibba HOM05D005251 ORTHO05D006680 3.9e-19 100.1 343 27.1
SEGI_26696 Sequoiadendron giganteum HOM05D005251 ORTHO05D006680 6.9e-16 89.4 130 38.5
Sed0019984 Sechium edule HOM05D005251 ORTHO05D006680 1.5e-15 88.2 274 27.0
HPP92_009144 Vanilla planifolia HOM05D005251 ORTHO05D006680 5.8e-15 86.3 129 33.3
Nitab4.5_0008523g0050 Nicotiana tabacum HOM05D005251 ORTHO05D006680 4.6e-12 76.6 268 26.1
arahy.Tifrunner.gnm1.ann1.BFBS1X Arachis hypogaea HOM05D005251 ORTHO05D006680 2.5e-10 70.9 119 31.1
THA.LOC104801942 Tarenaya hassleriana HOM05D003636 ORTHO05D005160 7.4e-10 69.3 258 25.2
MCO13G162 Micromonas commoda HOM05D003636 ORTHO05D005160 2.1e-09 67.8 207 26.1
MD13G1208100 Malus domestica HOM05D003636 ORTHO05D005160 4.8e-09 66.6 224 23.2
Prupe.1G031700 Prunus persica HOM05D003636 ORTHO05D005160 6.2e-09 66.2 224 23.7
PRCOL_00004810 Prasinoderma coloniale HOM05D002658 ORTHO05D003000 8.1e-09 65.9 52 53.8
MD16G1209600 Malus domestica HOM05D003636 ORTHO05D005160 9.0e-08 62.4 224 23.2
CBR_g41119 Chara braunii HOM05D003636 ORTHO05D005160 1.2e-07 62.0 154 27.3
Gorai.010G076500 Gossypium raimondii HOM05D003636 ORTHO05D005160 1.2e-07 62.0 224 22.8
Mapoly0080s0020 Marchantia polymorpha HOM05D003636 ORTHO05D005160 1.2e-07 62.0 221 22.6
AagrBONN_evm.TU.Sc2ySwM_368.1668 Anthoceros agrestis HOM05D002658 ORTHO05D003000 2.0e-07 61.2 60 50.0
Psat0s986g0040 Pisum sativum HOM05D003636 ORTHO05D005160 2.6e-07 60.8 224 23.7
Gohir.A06G066800 Gossypium hirsutum HOM05D003636 ORTHO05D005160 4.5e-07 60.1 224 23.7
Medtr1g107575 Medicago truncatula HOM05D003636 ORTHO05D005160 4.5e-07 60.1 320 20.0
Gohir.D06G065300 Gossypium hirsutum HOM05D003636 ORTHO05D005160 7.6e-07 59.3 226 23.0
Ciclev10004361m.g Citrus clementina HOM05D003636 ORTHO05D005160 9.9e-07 58.9 263 23.6
PGR142G0130 Punica granatum HOM05D003636 ORTHO05D005160 9.9e-07 58.9 224 24.1
GSVIVG01018130001 Vitis vinifera HOM05D003636 ORTHO05D005160 9.9e-07 58.9 224 24.6
HanXRQChr06g0181471 Helianthus annuus HOM05D003636 ORTHO05D005160 1.7e-06 58.2 222 23.4
HanXRQChr09g0258341 Helianthus annuus HOM05D003636 ORTHO05D005160 1.7e-06 58.2 222 23.4
Manes.02G210300 Manihot esculenta HOM05D003636 ORTHO05D005160 1.7e-06 58.2 225 24.0
Dinv44638 Davidia involucrata HOM05D003636 ORTHO05D005160 2.9e-06 57.4 224 21.4
Lsat_1_v5_gn_5_72980 Lactuca sativa HOM05D003636 ORTHO05D005160 2.9e-06 57.4 223 23.8
Pp3c1_36300 Physcomitrium patens HOM05D002658 ORTHO05D003000 2.9e-06 57.4 62 45.2
ECA233G4087 Erigeron canadensis HOM05D003636 ORTHO05D005160 3.8e-06 57.0 222 23.0
Sopen05g023240 Solanum pennellii HOM05D005251 ORTHO05D006680 6.4e-06 56.2 73 31.5
HPP92_018388 Vanilla planifolia HOM05D003636 ORTHO05D005160 8.4e-06 55.8 223 22.4


User provided reference genes

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