Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 0.0e+00 1260.4 654 100.0
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 1.9e-79 301.2 588 33.7
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 2.1e-78 297.7 611 33.7
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 4.7e-78 296.6 611 33.7
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 6.2e-78 296.2 611 33.2
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 1.1e-77 295.4 607 34.3
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 1.4e-77 295.0 617 32.4
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 1.4e-77 295.0 603 33.3
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.8e-77 294.7 611 34.9
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 2.3e-77 294.3 375 41.6
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 4.0e-77 293.5 621 34.5
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 4.0e-77 293.5 580 34.7
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 5.2e-77 293.1 611 33.6
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 6.8e-77 292.7 412 40.3
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 8.9e-77 292.4 414 40.8
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 8.9e-77 292.4 618 32.7
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.2e-76 292.0 614 32.7
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.2e-76 292.0 614 32.7
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 1.2e-76 292.0 614 32.7
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 1.2e-76 292.0 376 41.5
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 2.0e-76 291.2 408 40.2
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 2.6e-76 290.8 408 40.0
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 2.6e-76 290.8 602 33.2
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 2.6e-76 290.8 619 32.6
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 2.6e-76 290.8 618 32.5
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 2.6e-76 290.8 620 33.2
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 2.6e-76 290.8 401 40.4
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 2.6e-76 290.8 379 41.4
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 3.4e-76 290.4 427 39.6
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 3.4e-76 290.4 375 41.1
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 3.4e-76 290.4 621 33.2
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 4.4e-76 290.0 608 32.2
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 4.4e-76 290.0 605 33.7
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 4.4e-76 290.0 620 32.3
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 5.8e-76 289.7 382 41.6
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 7.5e-76 289.3 616 32.8
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 7.5e-76 289.3 617 32.4
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 7.5e-76 289.3 386 40.2
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 7.5e-76 289.3 416 39.2
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 9.9e-76 288.9 605 33.4
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 1.3e-75 288.5 379 42.5
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.7e-75 288.1 603 33.0
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.7e-75 288.1 435 39.1
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.7e-75 288.1 385 41.0
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 1.7e-75 288.1 596 33.1
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 1.7e-75 288.1 416 38.9
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 1.7e-75 288.1 380 40.0
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 2.2e-75 287.7 377 42.2
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 2.2e-75 287.7 382 41.1
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 3.7e-75 287.0 424 39.6
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 3.7e-75 287.0 405 39.8
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 4.9e-75 286.6 613 32.8
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 4.9e-75 286.6 409 40.3
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 4.9e-75 286.6 380 41.8
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 4.9e-75 286.6 380 41.8
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 8.3e-75 285.8 380 40.3
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 8.3e-75 285.8 587 32.9
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 1.1e-74 285.4 402 40.3
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 1.4e-74 285.0 427 38.9
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 1.4e-74 285.0 380 41.6
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 1.4e-74 285.0 411 38.9
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 1.9e-74 284.6 409 40.1
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 1.9e-74 284.6 386 40.2
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 1.9e-74 284.6 581 33.7
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 1.9e-74 284.6 386 39.9
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 2.4e-74 284.3 381 41.7
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 2.4e-74 284.3 398 40.2
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 2.4e-74 284.3 602 33.1
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 3.2e-74 283.9 379 41.4
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 3.2e-74 283.9 332 45.5
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 3.2e-74 283.9 587 34.2
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 3.2e-74 283.9 407 39.8
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 3.2e-74 283.9 376 40.7
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 4.1e-74 283.5 625 33.0
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 4.1e-74 283.5 380 41.3
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 4.1e-74 283.5 619 33.0
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 5.4e-74 283.1 417 39.8
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 7.1e-74 282.7 618 32.2
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 7.1e-74 282.7 620 32.7
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 7.1e-74 282.7 421 39.0
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 9.2e-74 282.3 579 34.0
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 9.2e-74 282.3 419 38.2
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.2e-73 282.0 427 38.6
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 1.2e-73 282.0 416 38.7
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 1.2e-73 282.0 380 41.3
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 1.2e-73 282.0 601 33.1
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 2.1e-73 281.2 417 39.3
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 2.1e-73 281.2 417 39.3
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.1e-73 281.2 602 33.1
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 2.1e-73 281.2 404 39.1
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 2.1e-73 281.2 589 32.9
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 2.7e-73 280.8 417 39.3
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.7e-73 280.8 602 33.1
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.7e-73 280.8 602 33.1
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 2.7e-73 280.8 609 32.3
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 2.7e-73 280.8 616 33.0
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 3.5e-73 280.4 417 39.1
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 3.5e-73 280.4 417 39.1
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 4.6e-73 280.0 597 32.5
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 6.0e-73 279.6 596 32.7
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 6.0e-73 279.6 371 41.0
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 6.0e-73 279.6 312 46.8
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 6.0e-73 279.6 392 39.3
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 7.8e-73 279.3 602 31.9
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 7.8e-73 279.3 602 32.9
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 7.8e-73 279.3 587 32.7
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 7.8e-73 279.3 421 38.5
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 1.0e-72 278.9 328 43.3
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.3e-72 278.5 382 40.6
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 1.3e-72 278.5 421 39.7
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 1.3e-72 278.5 587 32.5
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 2.3e-72 277.7 422 38.6
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 2.3e-72 277.7 386 39.9
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 3.0e-72 277.3 334 44.3
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 3.0e-72 277.3 407 39.6
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 5.1e-72 276.6 606 32.8
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 8.6e-72 275.8 345 45.2
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 8.6e-72 275.8 382 40.3
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 1.1e-71 275.4 379 43.0
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 1.9e-71 274.6 391 39.1
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 2.5e-71 274.2 602 30.9
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 3.3e-71 273.9 382 40.1
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 1.2e-70 271.9 582 32.0
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 1.6e-70 271.6 606 31.7
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 1.4e-69 268.5 648 31.5
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 4.4e-68 263.5 386 39.9
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 6.4e-67 259.6 423 37.4
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 4.2e-66 256.9 582 33.3
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 1.0e-64 252.3 688 29.2
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 3.9e-64 250.4 379 39.8
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 1.5e-63 248.4 412 36.2
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 2.8e-62 244.2 352 38.6
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 4.0e-61 240.4 295 44.4
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 5.3e-61 240.0 379 36.7
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 1.2e-60 238.8 285 42.5
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 9.9e-60 235.7 456 34.4
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 1.3e-59 235.3 382 36.4
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.7e-56 224.9 520 31.5
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 8.7e-56 222.6 337 39.8
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 1.1e-55 222.2 296 41.6
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 2.4e-50 204.5 740 25.9
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 6.2e-46 189.9 145 59.3
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.4e-45 188.0 144 59.0
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 2.4e-29 134.8 102 62.7
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 6.5e-27 126.7 481 26.0
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 3.0e-24 117.9 177 37.9
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 7.7e-12 76.6 71 52.1
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.9e-10 72.0 84 46.4
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 5.5e-10 70.5 45 62.2


User provided reference genes

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