Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 1.3e-288 995.7 502 100.0
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 7.5e-84 315.5 472 41.5
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 1.5e-79 301.2 452 40.7
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 3.8e-75 286.6 461 38.4
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 2.3e-72 277.3 458 38.2
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 2.3e-72 277.3 343 41.1
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 2.3e-72 277.3 447 38.7
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 6.6e-72 275.8 439 38.7
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 6.6e-72 275.8 440 38.0
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 6.6e-72 275.8 343 41.1
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 1.5e-71 274.6 356 41.9
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 1.9e-71 274.2 475 36.0
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 3.3e-71 273.5 343 39.9
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 5.6e-71 272.7 449 37.0
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 7.3e-71 272.3 449 37.6
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 9.6e-71 271.9 421 38.2
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 9.6e-71 271.9 352 41.5
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 9.6e-71 271.9 352 41.5
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 1.2e-70 271.6 444 38.1
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 1.6e-70 271.2 463 36.7
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 1.6e-70 271.2 446 37.2
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 2.1e-70 270.8 360 40.0
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 2.8e-70 270.4 449 37.4
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 2.8e-70 270.4 449 37.6
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 3.6e-70 270.0 452 38.3
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 3.6e-70 270.0 340 42.1
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 3.6e-70 270.0 452 37.4
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 4.7e-70 269.6 449 37.0
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 4.7e-70 269.6 449 36.3
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 4.7e-70 269.6 340 40.9
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 4.7e-70 269.6 473 36.8
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 4.7e-70 269.6 464 37.5
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 4.7e-70 269.6 453 36.6
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 6.2e-70 269.2 334 42.5
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 8.1e-70 268.9 455 38.0
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 8.1e-70 268.9 453 38.0
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.1e-69 268.5 476 36.6
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 1.8e-69 267.7 455 36.5
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 1.8e-69 267.7 452 36.9
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 1.8e-69 267.7 360 39.2
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 3.1e-69 266.9 450 36.7
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 4.0e-69 266.5 452 37.8
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 4.0e-69 266.5 458 36.9
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 4.0e-69 266.5 464 36.2
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 5.3e-69 266.2 455 36.5
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 5.3e-69 266.2 445 38.0
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 5.3e-69 266.2 453 36.0
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 6.9e-69 265.8 361 41.3
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 9.0e-69 265.4 449 36.1
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 1.2e-68 265.0 455 36.7
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.2e-68 265.0 357 40.3
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 1.5e-68 264.6 481 37.8
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 1.5e-68 264.6 370 39.5
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 2.6e-68 263.8 456 36.6
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 3.4e-68 263.5 443 36.6
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 4.4e-68 263.1 456 37.5
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 4.4e-68 263.1 467 35.8
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 4.4e-68 263.1 458 36.7
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 4.4e-68 263.1 356 39.6
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 5.8e-68 262.7 452 37.6
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 9.9e-68 261.9 466 36.3
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 1.3e-67 261.5 460 37.2
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 1.3e-67 261.5 456 36.4
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 2.2e-67 260.8 452 36.9
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 2.2e-67 260.8 465 35.7
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 2.9e-67 260.4 452 36.9
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 2.9e-67 260.4 349 40.1
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 6.4e-67 259.2 452 36.5
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 6.4e-67 259.2 460 37.4
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 8.4e-67 258.8 376 38.0
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 1.9e-66 257.7 463 35.6
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 1.9e-66 257.7 443 37.2
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 1.9e-66 257.7 458 36.0
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 1.9e-66 257.7 460 35.7
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.2e-66 256.9 377 39.5
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 5.4e-66 256.1 362 39.0
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 9.3e-66 255.4 463 35.9
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 9.3e-66 255.4 453 36.2
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 9.3e-66 255.4 465 35.5
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 1.2e-65 255.0 458 35.6
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 2.7e-65 253.8 455 36.3
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 3.5e-65 253.4 467 34.9
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.6e-65 253.1 463 36.1
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 7.8e-65 252.3 396 40.7
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.3e-64 251.5 317 41.6
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.3e-64 251.5 348 42.5
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 3.0e-64 250.4 435 36.6
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 3.0e-64 250.4 458 36.7
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 5.6e-63 246.1 437 36.4
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 9.6e-63 245.4 344 39.0
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 1.3e-62 245.0 327 40.7
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 8.1e-62 242.3 505 33.9
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 8.1e-62 242.3 457 35.7
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 5.3e-61 239.6 309 41.4
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 2.6e-60 237.3 464 34.7
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 4.5e-60 236.5 492 33.3
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 1.3e-59 235.0 348 38.5
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 1.3e-59 235.0 433 38.1
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 1.7e-59 234.6 399 35.3
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 3.8e-59 233.4 233 48.5
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 1.9e-58 231.1 320 39.1
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 9.3e-58 228.8 442 34.8
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 1.8e-56 224.6 362 37.0
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 3.9e-56 223.4 462 34.2
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 1.1e-55 221.9 349 39.0
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 1.1e-55 221.9 444 34.5
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 4.3e-55 219.9 465 33.1
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 7.4e-55 219.2 222 48.6
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 7.4e-55 219.2 332 38.3
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 8.1e-54 215.7 222 48.2
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 6.9e-53 212.6 330 39.1
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 1.6e-49 201.4 610 29.0
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.6e-46 191.4 182 47.8
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 9.0e-45 185.7 291 39.9
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 1.5e-44 184.9 344 32.8
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 7.9e-41 172.6 248 38.7
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.1e-37 162.2 466 29.6
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 7.2e-34 149.4 177 46.3
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 4.2e-26 123.6 185 36.2
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 2.4e-21 107.8 159 37.1
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 5.3e-21 106.7 97 48.5
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 8.5e-11 72.8 113 35.4
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.6e-09 68.6 123 35.8
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 8.8e-08 62.8 157 29.9
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 7.5e-07 59.7 160 30.0
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 8.3e-06 56.2 59 49.2


User provided reference genes

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