Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 1.3e-45 186.0 91 100.0
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 8.7e-23 110.2 80 60.0
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 3.3e-22 108.2 80 58.8
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 7.4e-22 107.1 75 58.7
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 1.3e-21 106.3 69 60.9
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.3e-21 106.3 69 60.9
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.3e-21 106.3 69 60.9
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.3e-21 106.3 69 60.9
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.3e-21 106.3 69 60.9
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 1.6e-21 105.9 69 59.4
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 2.8e-21 105.1 68 63.2
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 2.8e-21 105.1 68 63.2
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 2.8e-21 105.1 68 63.2
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 2.8e-21 105.1 75 56.0
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 2.8e-21 105.1 68 63.2
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 2.8e-21 105.1 68 63.2
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 2.8e-21 105.1 75 56.0
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 2.8e-21 105.1 72 58.3
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 3.7e-21 104.8 69 60.9
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 4.8e-21 104.4 68 63.2
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 4.8e-21 104.4 68 63.2
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 4.8e-21 104.4 68 60.3
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 6.3e-21 104.0 71 60.6
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 6.3e-21 104.0 72 59.7
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 6.3e-21 104.0 68 61.8
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 6.3e-21 104.0 69 59.4
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 8.2e-21 103.6 68 61.8
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 8.2e-21 103.6 71 57.7
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 8.2e-21 103.6 80 52.5
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 8.2e-21 103.6 72 56.9
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.1e-20 103.2 69 58.0
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.1e-20 103.2 67 61.2
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 1.1e-20 103.2 80 55.0
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 1.1e-20 103.2 69 60.9
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 1.4e-20 102.8 76 53.9
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.4e-20 102.8 75 54.7
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.4e-20 102.8 75 54.7
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 1.4e-20 102.8 79 51.9
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 1.4e-20 102.8 79 51.9
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 1.4e-20 102.8 72 56.9
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 1.8e-20 102.4 68 63.2
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 1.8e-20 102.4 72 56.9
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 1.8e-20 102.4 72 56.9
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 1.8e-20 102.4 69 55.1
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 1.8e-20 102.4 70 60.0
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 2.4e-20 102.1 72 55.6
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 2.4e-20 102.1 79 53.2
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 2.4e-20 102.1 68 58.8
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 3.1e-20 101.7 75 53.3
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 3.1e-20 101.7 72 55.6
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 3.1e-20 101.7 75 54.7
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 3.1e-20 101.7 75 54.7
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 3.1e-20 101.7 75 54.7
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 3.1e-20 101.7 80 51.2
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 3.1e-20 101.7 80 51.2
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 3.1e-20 101.7 80 52.5
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 3.1e-20 101.7 68 57.4
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 3.1e-20 101.7 69 56.5
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 4.1e-20 101.3 71 57.7
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 4.1e-20 101.3 72 55.6
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 4.1e-20 101.3 80 51.2
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 5.3e-20 100.9 68 57.4
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 5.3e-20 100.9 68 57.4
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 6.9e-20 100.5 71 57.7
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 6.9e-20 100.5 79 51.9
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 6.9e-20 100.5 82 53.7
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 6.9e-20 100.5 69 58.0
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 9.0e-20 100.1 72 54.2
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 9.0e-20 100.1 72 54.2
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.2e-19 99.8 72 56.9
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 1.2e-19 99.8 68 63.2
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 2.6e-19 98.6 71 53.5
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 3.4e-19 98.2 71 54.9
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 4.5e-19 97.8 79 50.6
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 4.5e-19 97.8 71 53.5
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 5.9e-19 97.4 68 57.4
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 5.9e-19 97.4 72 54.2
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 1.0e-18 96.7 74 56.8
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 1.0e-18 96.7 67 59.7
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 1.3e-18 96.3 77 54.5
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.7e-18 95.9 76 51.3
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.7e-18 95.9 70 54.3
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 2.9e-18 95.1 66 60.6
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 2.9e-18 95.1 60 63.3
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 3.8e-18 94.7 66 53.0
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 3.8e-18 94.7 66 53.0
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 5.0e-18 94.4 80 52.5
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 5.0e-18 94.4 69 55.1
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 6.5e-18 94.0 71 52.1
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 1.1e-17 93.2 57 63.2
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 1.4e-17 92.8 60 58.3
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 1.4e-17 92.8 83 47.0
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.9e-17 92.4 63 57.1
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 3.2e-17 91.7 69 53.6
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 3.2e-17 91.7 69 53.6
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 3.2e-17 91.7 83 45.8
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 3.2e-17 91.7 58 60.3
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 4.2e-17 91.3 72 50.0
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 5.5e-17 90.9 81 50.6
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 5.5e-17 90.9 67 53.7
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 5.5e-17 90.9 67 53.7
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 9.3e-17 90.1 61 55.7
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 1.6e-16 89.4 69 52.2
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.6e-16 89.4 58 56.9
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 2.7e-16 88.6 97 43.3
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 2.7e-16 88.6 74 51.4
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 4.6e-16 87.8 80 46.2
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 6.1e-16 87.4 72 51.4
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 6.1e-16 87.4 72 50.0
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 6.1e-16 87.4 72 50.0
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 6.1e-16 87.4 72 50.0
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 6.1e-16 87.4 67 53.7
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 6.1e-16 87.4 71 50.7
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 7.9e-16 87.0 75 49.3
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 1.4e-15 86.3 67 53.7
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 1.8e-15 85.9 72 50.0
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 2.3e-15 85.5 69 47.8
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.3e-15 85.5 58 56.9
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 2.3e-15 85.5 72 50.0
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 3.9e-15 84.7 80 43.8
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 3.9e-15 84.7 80 45.0
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 3.9e-15 84.7 69 47.8
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 5.1e-15 84.3 60 58.3
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 5.1e-15 84.3 69 49.3
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 5.1e-15 84.3 69 49.3
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 5.1e-15 84.3 71 49.3
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 8.8e-15 83.6 57 54.4
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 1.9e-14 82.4 69 47.8
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 4.3e-14 81.3 50 64.0
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 7.4e-14 80.5 69 47.8
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 7.4e-14 80.5 69 47.8
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 9.7e-14 80.1 71 46.5
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 1.7e-13 79.3 63 52.4
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 2.2e-13 79.0 72 51.4
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 2.8e-13 78.6 50 62.0
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 8.2e-13 77.0 75 48.0
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 1.1e-12 76.6 69 43.5
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 1.1e-12 76.6 49 53.1
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 1.4e-12 76.3 69 43.5
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 1.8e-12 75.9 50 56.0
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 2.4e-12 75.5 89 40.4
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 2.4e-12 75.5 52 55.8
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 9.1e-12 73.6 66 48.5
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 1.5e-11 72.8 48 47.9
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 2.0e-11 72.4 72 41.7
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 2.0e-11 72.4 47 48.9
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 4.5e-11 71.2 69 44.9
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 8.5e-10 67.0 90 37.8
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 5.5e-09 64.3 65 36.9
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 7.2e-09 63.9 58 48.3
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 1.6e-08 62.8 56 46.4
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 1.8e-07 59.3 64 40.6
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 3.0e-07 58.5 55 50.9
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 5.1e-07 57.8 58 43.1
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 5.1e-07 57.8 34 58.8
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 2.0e-06 55.8 52 40.4


User provided reference genes

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