Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 0.0e+00 2520.7 1403 100.0
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 1.4e-82 312.8 1407 26.2
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 1.0e-77 296.6 1344 25.0
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 2.5e-76 292.0 1408 24.5
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 2.1e-75 288.9 1386 24.0
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.1e-75 288.9 1366 26.0
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 4.7e-75 287.7 1369 24.8
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 6.2e-75 287.3 1408 24.7
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 8.0e-75 287.0 1398 24.1
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 2.3e-74 285.4 1397 24.1
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 6.8e-74 283.9 1382 24.2
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 2.6e-73 282.0 1371 24.0
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 9.8e-73 280.0 1351 23.6
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 2.9e-72 278.5 1401 24.8
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 4.9e-72 277.7 1380 24.1
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 6.4e-72 277.3 1396 23.8
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 8.3e-72 276.9 1328 24.0
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 8.3e-72 276.9 1370 25.0
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 1.1e-71 276.6 1384 24.0
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 1.9e-71 275.8 1397 23.4
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 2.4e-71 275.4 1380 24.1
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 3.2e-71 275.0 1388 24.3
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 3.2e-71 275.0 1384 23.9
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 3.2e-71 275.0 1356 24.0
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 3.2e-71 275.0 1396 24.1
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 4.1e-71 274.6 1402 23.9
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 7.0e-71 273.9 1364 24.2
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 7.0e-71 273.9 1384 23.9
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 9.2e-71 273.5 1410 24.8
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 9.2e-71 273.5 1345 23.9
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 1.2e-70 273.1 1399 24.2
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.6e-70 272.7 1385 24.2
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 2.0e-70 272.3 1403 23.7
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 2.7e-70 271.9 1397 24.1
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 3.5e-70 271.6 1402 23.7
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 3.5e-70 271.6 1385 24.0
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 4.6e-70 271.2 1402 23.7
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 6.0e-70 270.8 1381 24.0
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 1.0e-69 270.0 1379 24.7
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 1.0e-69 270.0 1389 23.6
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 1.0e-69 270.0 1409 23.9
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.3e-69 269.6 1390 24.2
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 1.3e-69 269.6 1384 23.5
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 1.7e-69 269.2 1379 24.1
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 3.9e-69 268.1 1411 23.5
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 3.9e-69 268.1 1363 23.3
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 5.0e-69 267.7 1362 24.0
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 5.0e-69 267.7 1381 23.8
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 6.6e-69 267.3 1384 23.3
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 6.6e-69 267.3 1382 23.9
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 8.6e-69 266.9 1384 23.8
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 2.5e-68 265.4 1391 23.7
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 4.3e-68 264.6 1387 23.7
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 7.3e-68 263.8 1287 24.2
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 7.3e-68 263.8 1389 24.0
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 7.3e-68 263.8 1397 23.1
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 1.6e-67 262.7 1347 23.8
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 2.8e-67 261.9 1357 24.0
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 2.8e-67 261.9 1379 23.4
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 6.2e-67 260.8 1367 24.1
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 6.2e-67 260.8 1351 24.1
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 8.1e-67 260.4 1416 23.7
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 1.1e-66 260.0 1402 23.8
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 1.1e-66 260.0 1386 23.6
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 1.4e-66 259.6 1351 23.2
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 1.8e-66 259.2 1377 23.5
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 2.3e-66 258.8 1130 24.7
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 2.3e-66 258.8 1364 23.1
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 1.5e-65 256.1 1357 23.4
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 4.4e-65 254.6 1343 24.3
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 5.8e-65 254.2 1363 23.6
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.3e-64 253.1 1367 23.3
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 1.3e-64 253.1 1394 24.0
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 1.7e-64 252.7 1388 23.6
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 3.7e-64 251.5 1378 22.6
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 1.1e-63 250.0 1131 24.6
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 7.1e-63 247.3 1386 22.9
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 6.0e-62 244.2 1422 24.2
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 6.0e-62 244.2 1361 22.6
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 3.6e-59 235.0 1351 22.9
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 3.6e-59 235.0 1342 24.2
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 1.1e-58 233.4 1389 22.6
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 1.6e-54 219.5 781 26.2
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 3.5e-54 218.4 770 26.1
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 6.0e-54 217.6 774 26.1
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 1.0e-53 216.9 1378 22.8
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 6.6e-53 214.2 1240 23.3
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 1.9e-52 212.6 778 26.3
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 2.5e-52 212.2 771 26.1
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 3.3e-52 211.8 776 26.4
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 2.1e-51 209.1 769 25.9
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 3.6e-51 208.4 769 25.2
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 4.7e-51 208.0 770 27.4
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 6.2e-51 207.6 771 25.0
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 8.1e-51 207.2 771 25.0
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 3.1e-50 205.3 769 25.6
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 3.1e-50 205.3 769 25.6
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 8.9e-50 203.8 772 25.3
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 1.3e-48 199.9 769 24.6
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 3.8e-48 198.4 771 24.9
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 1.4e-47 196.4 772 24.7
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 5.4e-47 194.5 828 24.2
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 2.5e-44 185.7 1394 21.5
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 4.9e-40 171.4 648 24.4
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 4.9e-40 171.4 1455 21.7
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 1.0e-37 163.7 416 31.0
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 1.1e-36 160.2 653 24.8
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.6e-35 156.4 694 25.2
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 3.1e-34 152.1 275 36.4
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 6.9e-34 151.0 538 26.0
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 5.8e-33 147.9 1245 22.6
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 4.9e-32 144.8 246 34.6
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 1.9e-31 142.9 245 37.6
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 3.7e-27 128.6 626 24.0
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 1.4e-26 126.7 1310 22.4
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.0e-25 122.9 547 25.4
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 5.8e-25 121.3 255 33.3
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 9.3e-23 114.0 687 24.6
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 9.6e-20 104.0 859 21.2
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.1e-18 99.0 656 23.9
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 6.9e-10 71.2 370 24.6
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 2.2e-08 66.2 106 34.0
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 2.2e-08 66.2 351 24.2
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 8.5e-08 64.3 156 29.5
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.9e-07 63.2 475 22.5
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 7.9e-06 57.8 182 24.2


User provided reference genes

Program Settings