Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 1.0e-168 596.7 302 100.0
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 7.1e-45 185.3 260 44.2
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 1.2e-44 184.5 249 45.0
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 4.6e-44 182.6 228 46.9
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 7.8e-44 181.8 255 42.7
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 2.3e-43 180.3 255 42.4
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 6.6e-43 178.7 255 42.0
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 8.7e-43 178.3 267 41.6
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 8.7e-43 178.3 193 49.2
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 1.1e-42 177.9 243 43.2
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 1.5e-42 177.6 229 43.7
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 1.5e-42 177.6 243 43.6
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 1.9e-42 177.2 255 42.4
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 3.3e-42 176.4 274 41.2
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 4.3e-42 176.0 242 44.2
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 4.3e-42 176.0 242 44.2
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 4.3e-42 176.0 254 42.5
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 5.6e-42 175.6 207 47.3
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 7.3e-42 175.3 187 50.3
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 7.3e-42 175.3 279 40.5
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 1.6e-41 174.1 251 43.0
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 2.1e-41 173.7 207 47.8
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 2.1e-41 173.7 238 43.7
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 2.1e-41 173.7 186 48.9
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 2.8e-41 173.3 226 43.4
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 2.8e-41 173.3 263 43.0
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 3.6e-41 172.9 188 48.4
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 3.6e-41 172.9 262 41.2
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 3.6e-41 172.9 252 42.5
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 3.6e-41 172.9 229 45.4
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 4.8e-41 172.6 287 39.7
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 6.2e-41 172.2 275 41.1
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 6.2e-41 172.2 275 41.1
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 6.2e-41 172.2 279 40.9
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 6.2e-41 172.2 246 43.1
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 6.2e-41 172.2 262 40.1
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 6.2e-41 172.2 219 44.3
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 8.1e-41 171.8 226 43.4
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 8.1e-41 171.8 228 43.9
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 8.1e-41 171.8 210 44.8
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 8.1e-41 171.8 252 41.3
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 8.1e-41 171.8 246 41.5
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 1.1e-40 171.4 228 44.7
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 1.1e-40 171.4 197 48.7
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 1.1e-40 171.4 246 41.1
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 1.4e-40 171.0 203 45.3
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 1.4e-40 171.0 262 40.8
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 1.8e-40 170.6 216 45.4
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 2.4e-40 170.2 226 46.0
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 2.4e-40 170.2 203 44.8
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 2.4e-40 170.2 218 45.0
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 2.4e-40 170.2 192 49.0
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 3.1e-40 169.9 188 48.4
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 4.0e-40 169.5 287 39.0
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 5.3e-40 169.1 203 47.8
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 6.9e-40 168.7 284 40.1
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 9.0e-40 168.3 228 46.1
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 9.0e-40 168.3 233 42.5
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 9.0e-40 168.3 248 42.7
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 9.0e-40 168.3 255 41.6
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 1.2e-39 167.9 186 48.9
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.5e-39 167.5 228 45.6
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 1.5e-39 167.5 246 41.5
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 1.5e-39 167.5 188 47.3
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 1.5e-39 167.5 252 40.9
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 1.5e-39 167.5 187 50.3
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 2.0e-39 167.2 202 47.5
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 2.0e-39 167.2 188 47.9
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 2.6e-39 166.8 219 44.3
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 2.6e-39 166.8 200 46.5
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 3.4e-39 166.4 188 46.8
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 4.4e-39 166.0 188 47.9
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 4.4e-39 166.0 186 48.4
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 4.4e-39 166.0 187 48.1
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 4.4e-39 166.0 249 43.4
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 5.8e-39 165.6 298 38.3
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 5.8e-39 165.6 233 40.8
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 5.8e-39 165.6 247 41.3
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 5.8e-39 165.6 253 42.7
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 7.6e-39 165.2 307 36.2
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 7.6e-39 165.2 287 39.0
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 9.9e-39 164.9 187 49.2
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 9.9e-39 164.9 265 41.5
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 1.3e-38 164.5 264 40.9
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 1.3e-38 164.5 225 45.3
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.7e-38 164.1 188 47.3
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 1.7e-38 164.1 187 48.1
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 1.7e-38 164.1 246 41.5
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 2.2e-38 163.7 293 37.2
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 2.2e-38 163.7 290 39.7
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 2.2e-38 163.7 290 39.7
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 2.9e-38 163.3 263 41.4
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 3.8e-38 162.9 186 47.8
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 3.8e-38 162.9 187 48.1
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 3.8e-38 162.9 217 44.7
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 4.9e-38 162.5 219 44.7
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 6.4e-38 162.2 198 43.9
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 6.4e-38 162.2 243 41.6
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 6.4e-38 162.2 195 47.2
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 8.4e-38 161.8 242 41.3
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 1.1e-37 161.4 202 45.5
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 4.2e-37 159.5 207 46.4
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 5.4e-37 159.1 246 40.7
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 5.4e-37 159.1 188 46.8
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 7.1e-37 158.7 189 46.0
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 7.1e-37 158.7 243 40.7
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 9.3e-37 158.3 228 42.1
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 1.0e-35 154.8 239 41.4
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 1.3e-35 154.5 234 39.7
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 6.6e-35 152.1 290 37.2
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 6.6e-35 152.1 206 42.7
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 1.3e-33 147.9 295 36.3
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 3.6e-33 146.4 171 47.4
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 2.4e-32 143.7 352 33.5
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 5.3e-32 142.5 225 40.4
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 4.9e-30 136.0 134 50.7
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 6.0e-28 129.0 293 34.5
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 3.9e-27 126.3 310 31.6
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 3.9e-27 126.3 152 44.7
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 4.2e-21 106.3 223 34.1
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 3.5e-20 103.2 185 37.8
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 2.3e-11 73.9 125 35.2
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 7.4e-10 68.9 58 56.9
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 6.3e-09 65.9 87 43.7
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 8.2e-09 65.5 150 35.3
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 3.1e-08 63.5 44 63.6


User provided reference genes

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