Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 2624.4 1328 100.0
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1987.2 1332 74.4
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 1961.8 1334 73.2
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 1958.3 1334 73.2
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 1955.6 1334 73.1
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 1955.6 1334 73.1
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 1919.4 1334 71.5
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 1919.4 1333 71.6
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 1903.3 1334 70.5
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 1900.2 1332 70.3
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 1899.0 1334 70.4
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 1897.1 1334 70.3
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 1889.8 1332 69.9
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 1889.4 1332 70.0
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 1889.0 1332 70.1
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 1888.2 1335 70.1
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 1888.2 1332 69.8
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 1887.8 1332 70.1
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 1886.3 1335 70.2
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 1885.9 1332 69.7
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 1885.2 1335 70.2
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 1884.8 1332 69.7
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 1884.8 1331 69.5
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 1884.8 1332 69.7
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 1882.5 1332 69.4
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 1882.1 1332 69.5
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 1881.7 1338 69.8
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 1881.7 1338 69.8
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1881.7 1332 69.8
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 1881.3 1332 69.6
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 1880.9 1336 70.1
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 1880.1 1332 69.4
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 1879.4 1331 69.8
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 1879.4 1334 69.7
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 1878.2 1332 69.4
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 1878.2 1332 69.2
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 1877.8 1332 69.1
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 1877.1 1332 69.4
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1876.7 1332 69.7
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 1876.3 1331 69.7
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1876.3 1332 69.4
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 1875.9 1332 69.3
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 1875.9 1343 69.1
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 1875.9 1332 69.1
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 1875.9 1332 69.2
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 1875.9 1345 68.8
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 1874.8 1335 69.5
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 1874.4 1334 69.4
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 1874.4 1330 69.3
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 1874.0 1333 69.5
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 1873.6 1332 69.6
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 1873.2 1333 69.7
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 1872.8 1332 69.1
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1872.4 1334 69.1
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 1872.4 1333 69.5
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1872.1 1332 69.4
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 1871.7 1333 69.3
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 1871.3 1333 69.0
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 1870.9 1333 69.3
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 1870.1 1334 68.9
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 1870.1 1334 68.9
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 1870.1 1334 68.9
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 1870.1 1332 68.9
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 1870.1 1333 69.4
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 1869.7 1333 69.2
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 1869.4 1334 68.8
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 1869.4 1334 68.8
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 1868.2 1333 68.9
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 1868.2 1334 69.2
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 1867.8 1333 69.4
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 1867.4 1335 69.4
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 1867.0 1333 68.8
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 1867.0 1333 69.5
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 1865.9 1333 69.2
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 1864.7 1332 69.1
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 1864.4 1333 69.3
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 1864.0 1332 68.9
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 1864.0 1350 68.8
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 1864.0 1333 69.2
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 1864.0 1333 68.9
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 1862.4 1332 69.0
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 1861.7 1333 68.8
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 1861.3 1333 68.8
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 1860.9 1333 68.5
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 1860.5 1333 68.8
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 1860.5 1332 68.9
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 1860.1 1333 68.7
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 1860.1 1336 69.2
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 1859.3 1333 68.6
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1859.0 1334 68.7
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 1858.2 1332 68.8
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 1858.2 1332 68.8
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 1855.9 1334 69.3
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 1854.3 1334 69.3
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 1853.2 1350 68.3
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 1844.7 1359 67.5
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 1844.3 1392 66.5
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 1843.2 1332 68.5
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 1835.1 1333 68.7
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 1827.8 1332 67.9
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 1822.8 1332 67.6
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 1809.3 1333 67.9
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 1805.4 1332 68.0
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 1800.8 1332 67.6
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 1761.1 1358 66.5
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 1749.9 1336 65.9
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1687.5 1207 69.0
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 1677.9 1210 69.3
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 1664.4 1209 68.2
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 1645.9 1289 65.4
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1531.5 1330 60.4
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1457.2 1346 58.2
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1446.4 1070 67.4
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1434.9 1058 67.7
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1338.9 919 71.6
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1325.1 969 67.9
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1289.6 904 70.7
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1184.1 817 71.2
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1177.5 813 70.8
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 7.4e-280 968.0 1198 47.2
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 7.7e-269 931.4 696 68.7
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 1.0e-249 867.8 670 64.2
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 5.2e-233 812.4 664 62.0
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 2.4e-230 803.5 575 68.5
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 2.5e-187 660.6 606 57.1
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 2.9e-183 647.1 1430 32.4
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 1.2e-160 572.0 1526 29.6
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 6.1e-157 559.7 414 66.7
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 3.0e-156 557.4 398 68.1
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.3e-154 552.0 414 65.7
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 2.2e-154 551.2 415 66.3
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 2.8e-154 550.8 415 65.3
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 4.9e-114 417.2 1274 27.9
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 1.1e-76 293.1 175 79.4
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 1.0e-50 206.8 123 77.2
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 3.9e-47 194.9 147 64.6
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 4.1e-36 158.3 107 73.8
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 3.8e-26 125.2 138 47.1
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 8.0e-24 117.5 91 62.6
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 3.0e-23 115.5 100 61.0
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 4.8e-21 108.2 196 37.8
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 5.2e-15 88.2 71 60.6


User provided reference genes

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