Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G248 Micromonas commoda HOM05D004574 ORTHO05D005612 0.0e+00 2339.7 1486 100.0
Nitab4.5_0001151g0100 Nicotiana tabacum HOM05D004574 ORTHO05D005612 6.6e-11 74.7 61 63.9
CAN.G518.8 Capsicum annuum HOM05D004574 ORTHO05D005612 1.5e-10 73.6 61 62.3
Nitab4.5_0001671g0130 Nicotiana tabacum HOM05D004574 ORTHO05D005612 1.5e-10 73.6 61 62.3
Actinidia21909 Actinidia chinensis HOM05D004574 ORTHO05D005612 1.9e-10 73.2 63 58.7
Actinidia04251 Actinidia chinensis HOM05D004574 ORTHO05D005612 2.5e-10 72.8 63 58.7
Peaxi162Scf00347g00125 Petunia axillaris HOM05D004574 ORTHO05D005612 3.3e-10 72.4 61 60.7
CSS0028433 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 4.3e-10 72.0 59 61.0
Haze_19313 Corylus avellana HOM05D004574 ORTHO05D005612 7.3e-10 71.2 68 61.8
Lsat_1_v5_gn_5_90461 Lactuca sativa HOM05D004574 ORTHO05D005612 7.3e-10 71.2 54 66.7
Lsat_1_v5_gn_8_60221 Lactuca sativa HOM05D004574 ORTHO05D005612 7.3e-10 71.2 54 66.7
Solyc07g007040.4 Solanum lycopersicum HOM05D004574 ORTHO05D005612 7.3e-10 71.2 61 60.7
Sopen07g003110 Solanum pennellii HOM05D004574 ORTHO05D005612 7.3e-10 71.2 61 60.7
vmacro21880 Vaccinium macrocarpon HOM05D004574 ORTHO05D005612 7.3e-10 71.2 54 66.7
CANSAT11G2415 Cannabis sativa HOM05D004574 ORTHO05D005612 9.6e-10 70.9 72 52.8
Cfa020884 Carpinus fangiana HOM05D004574 ORTHO05D005612 9.6e-10 70.9 68 61.8
CiPaw.16G117400 Carya illinoinensis HOM05D004574 ORTHO05D005612 9.6e-10 70.9 66 56.1
ECA236G2347 Erigeron canadensis HOM05D004574 ORTHO05D005612 1.3e-09 70.5 53 66.0
QL02p091406 Quercus lobata HOM05D004574 ORTHO05D005612 1.3e-09 70.5 67 58.2
ECA247G1966 Erigeron canadensis HOM05D000475 ORTHO05D000343 1.6e-09 70.1 53 67.9
ECA234G1322 Erigeron canadensis HOM05D004574 ORTHO05D005612 2.1e-09 69.7 53 66.0
CBR_g21811 Chara braunii HOM05D004574 ORTHO05D005612 2.8e-09 69.3 280 28.6
Lj9A709T23 Lonicera japonica HOM05D004574 ORTHO05D005612 2.8e-09 69.3 66 54.5
MBI14_g15649_MAGBIO Magnolia biondii HOM05D004574 ORTHO05D005612 4.8e-09 68.6 78 48.7
Sabra18G0096500 Salix brachista HOM05D004574 ORTHO05D005612 4.8e-09 68.6 64 51.6
SGA_v2.0_scaffold229G43349 Striga asiatica HOM05D004574 ORTHO05D005612 6.2e-09 68.2 53 62.3
ATR0629G131 Amborella trichopoda HOM05D004574 ORTHO05D005612 8.1e-09 67.8 52 65.4
HanXRQChr05g0139651 Helianthus annuus HOM05D004574 ORTHO05D005612 8.1e-09 67.8 81 48.1
HanXRQChr12g0357011 Helianthus annuus HOM05D004574 ORTHO05D005612 8.1e-09 67.8 54 64.8
Hma1.2p1_1784F.1_g302190 Hydrangea macrophylla HOM05D004574 ORTHO05D005612 8.1e-09 67.8 59 57.6
Hma1.2p1_1784F.1_g302200 Hydrangea macrophylla HOM05D004574 ORTHO05D005612 8.1e-09 67.8 59 57.6
MCO14G075 Micromonas commoda HOM05D004574 ORTHO05D005612 1.1e-08 67.4 52 63.5
Atru.chr7.229_Atru.chr7.228 Acer truncatum HOM05D004574 ORTHO05D005612 1.4e-08 67.0 72 48.6
Ciclev10007567m.g Citrus clementina HOM05D004574 ORTHO05D005612 1.4e-08 67.0 52 63.5
Duzib168G1873 Durio zibethinus HOM05D004574 ORTHO05D005612 1.4e-08 67.0 57 57.9
Migut.J01279 Erythranthe guttata HOM05D004574 ORTHO05D005612 1.4e-08 67.0 56 60.7
Sed0008757 Sechium edule HOM05D004574 ORTHO05D005612 1.4e-08 67.0 57 59.6
Carub.0003s0894 Capsella rubella HOM05D004574 ORTHO05D005612 1.8e-08 66.6 56 60.7
TAR625G1332 Trochodendron aralioides HOM05D004574 ORTHO05D005612 1.8e-08 66.6 52 67.3
Thhalv10020109m.g Eutrema salsugineum HOM05D004574 ORTHO05D005612 2.4e-08 66.2 56 60.7
Potri.018G113600 Populus trichocarpa HOM05D004574 ORTHO05D005612 2.4e-08 66.2 64 50.0
THA.LOC104815398 Tarenaya hassleriana HOM05D004574 ORTHO05D005612 2.4e-08 66.2 54 59.3
Oeu040778.1 Olea europaea HOM05D004574 ORTHO05D005612 3.1e-08 65.9 63 54.0
AL3G21080 Arabidopsis lyrata HOM05D004574 ORTHO05D005612 4.0e-08 65.5 56 58.9
CARHR084360 Cardamine hirsuta HOM05D004574 ORTHO05D005612 4.0e-08 65.5 56 58.9
Cc06_g07390 Coffea canephora HOM05D004574 ORTHO05D005612 4.0e-08 65.5 53 60.4
Dinv42910 Davidia involucrata HOM05D004574 ORTHO05D005612 4.0e-08 65.5 63 54.0
Dinv43191 Davidia involucrata HOM05D004574 ORTHO05D005612 4.0e-08 65.5 63 54.0
BcaC05g29496 Brassica carinata HOM05D004574 ORTHO05D005612 5.3e-08 65.1 57 57.9
BcaC05g29707 Brassica carinata HOM05D004574 ORTHO05D005612 5.3e-08 65.1 57 57.9
A05p39200 Brassica napus HOM05D004574 ORTHO05D005612 5.3e-08 65.1 57 57.9
C05p58250 Brassica napus HOM05D004574 ORTHO05D005612 5.3e-08 65.1 57 57.9
BolC5t34479H Brassica oleracea HOM05D004574 ORTHO05D005612 5.3e-08 65.1 57 57.9
BraA05t22709Z Brassica rapa HOM05D004574 ORTHO05D005612 5.3e-08 65.1 57 57.9
FvH4_1g01590 Fragaria vesca HOM05D004574 ORTHO05D005612 6.9e-08 64.7 72 54.2
FAN28G0742 Fragaria x ananassa HOM05D004574 ORTHO05D005612 6.9e-08 64.7 52 65.4
Gohir.A06G049000 Gossypium hirsutum HOM05D004574 ORTHO05D005612 6.9e-08 64.7 51 62.7
Gohir.D06G048700 Gossypium hirsutum HOM05D004574 ORTHO05D005612 6.9e-08 64.7 51 62.7
Gorai.010G054900 Gossypium raimondii HOM05D004574 ORTHO05D005612 6.9e-08 64.7 51 62.7
Hund14397 Selenicereus undatus HOM05D004574 ORTHO05D005612 6.9e-08 64.7 327 27.8
Sc18g0000060 Simmondsia chinensis HOM05D004574 ORTHO05D005612 6.9e-08 64.7 71 49.3
TPR.G15786 Trifolium pratense HOM05D004574 ORTHO05D005612 6.9e-08 64.7 62 53.2
Zm00001eb028250 Zea mays HOM05D004574 ORTHO05D005612 6.9e-08 64.7 52 63.5
FAN19G2203 Fragaria x ananassa HOM05D004574 ORTHO05D005612 9.0e-08 64.3 53 64.2
FAN23G1466 Fragaria x ananassa HOM05D004574 ORTHO05D005612 9.0e-08 64.3 53 64.2
FAN26G2227 Fragaria x ananassa HOM05D004574 ORTHO05D005612 9.0e-08 64.3 53 64.2
FAN28G2389 Fragaria x ananassa HOM05D004574 ORTHO05D005612 9.0e-08 64.3 53 64.2
Lalb_Chr07g0179541 Lupinus albus HOM05D004574 ORTHO05D005612 9.0e-08 64.3 66 53.0
RcHm_v2.0_Chr2g0086551 Rosa chinensis HOM05D004574 ORTHO05D005612 9.0e-08 64.3 53 64.2
EL10Ac8g18810 Beta vulgaris HOM05D004574 ORTHO05D005612 1.2e-07 63.9 52 61.5
Nn8g39728 Nelumbo nucifera HOM05D004574 ORTHO05D005612 1.2e-07 63.9 63 50.8
Thecc.09G142400 Theobroma cacao HOM05D004574 ORTHO05D005612 1.2e-07 63.9 53 58.5
AagrBONN_evm.TU.Sc2ySwM_340.493 Anthoceros agrestis HOM05D004574 ORTHO05D005612 1.5e-07 63.5 52 67.3
Aqoxy7G03519 Aquilegia oxysepala HOM05D004574 ORTHO05D005612 1.5e-07 63.5 52 63.5
COL.COLO4_24085 Corchorus olitorius HOM05D004574 ORTHO05D005612 1.5e-07 63.5 51 60.8
MELO3C010260.2 Cucumis melo HOM05D004574 ORTHO05D005612 1.5e-07 63.5 54 59.3
CsaV3_1G028540 Cucumis sativus L. HOM05D004574 ORTHO05D005612 1.5e-07 63.5 54 59.3
HPP92_005340 Vanilla planifolia HOM05D004574 ORTHO05D005612 2.0e-07 63.2 52 63.5
AT3G09850 Arabidopsis thaliana HOM05D004574 ORTHO05D005612 2.6e-07 62.8 53 60.4
Lalb_Chr12g0198521 Lupinus albus HOM05D004574 ORTHO05D005612 2.6e-07 62.8 66 50.0
SEGI_33529 Sequoiadendron giganteum HOM05D004574 ORTHO05D005612 2.6e-07 62.8 74 48.6
Glyma.13G156900 Glycine max HOM05D004574 ORTHO05D005612 3.4e-07 62.4 59 52.5
Glyma.17G104500 Glycine max HOM05D004574 ORTHO05D005612 3.4e-07 62.4 59 52.5
PSO170G6219 Papaver somniferum HOM05D004574 ORTHO05D005612 3.4e-07 62.4 52 61.5
Sed0022583 Sechium edule HOM05D004574 ORTHO05D005612 3.4e-07 62.4 52 61.5
Cpa.g.sc46.91 Carica papaya HOM05D004574 ORTHO05D005612 4.5e-07 62.0 52 57.7
Phvul.003G175300 Phaseolus vulgaris HOM05D004574 ORTHO05D005612 4.5e-07 62.0 62 50.0
Pp3c15_19210 Physcomitrium patens HOM05D004574 ORTHO05D005612 4.5e-07 62.0 53 60.4
Pp3c15_19211 Physcomitrium patens HOM05D004574 ORTHO05D005612 4.5e-07 62.0 53 60.4
Potri.006G189501 Populus trichocarpa HOM05D004574 ORTHO05D005612 4.5e-07 62.0 64 46.9
Prupe.7G253700 Prunus persica HOM05D004574 ORTHO05D005612 4.5e-07 62.0 53 60.4
MSTRG.19628 Avicennia marina HOM05D004574 ORTHO05D005612 5.8e-07 61.6 53 58.5
Duzib187G1624 Durio zibethinus HOM05D004574 ORTHO05D005612 5.8e-07 61.6 51 60.8
Eucgr.L03484 Eucalyptus grandis HOM05D004574 ORTHO05D005612 5.8e-07 61.6 71 50.7
Eucgr.L02934 Eucalyptus grandis HOM05D004574 ORTHO05D005612 7.6e-07 61.2 76 51.3
Lj4g0023014 Lotus japonicus HOM05D004574 ORTHO05D005612 7.6e-07 61.2 66 50.0
Medtr4g116570 Medicago truncatula HOM05D004574 ORTHO05D005612 7.6e-07 61.2 52 55.8
Sabra06G0145700 Salix brachista HOM05D004574 ORTHO05D005612 7.6e-07 61.2 54 53.7
VMungo1215G1939 Vigna mungo HOM05D004574 ORTHO05D005612 7.6e-07 61.2 54 53.7
Eucgr.C04076 Eucalyptus grandis HOM05D004574 ORTHO05D005612 9.9e-07 60.8 77 51.9
MBI06_g17844_MAGBIO Magnolia biondii HOM05D000188 ORTHO05D000362 9.9e-07 60.8 59 54.2
PGR102G2914 Punica granatum HOM05D004574 ORTHO05D005612 9.9e-07 60.8 50 62.0
Ah.09g223910 Amaranthus hybridus HOM05D004574 ORTHO05D005612 1.3e-06 60.5 50 60.0
Eucgr.C04073 Eucalyptus grandis HOM05D004574 ORTHO05D005612 1.3e-06 60.5 77 50.6
MD02G1012700 Malus domestica HOM05D004574 ORTHO05D005612 1.3e-06 60.5 61 50.8
MD15G1158500 Malus domestica HOM05D004574 ORTHO05D005612 1.3e-06 60.5 61 50.8
HPP92_005314 Vanilla planifolia HOM05D004574 ORTHO05D005612 1.3e-06 60.5 87 48.3
ClCG06G012070 Citrullus lanatus HOM05D004574 ORTHO05D005612 1.7e-06 60.1 50 60.0
Aa31LG3G2320 Aethionema arabicum HOM05D004574 ORTHO05D005612 2.2e-06 59.7 148 34.5
Psat4g033240 Pisum sativum HOM05D004574 ORTHO05D005612 2.2e-06 59.7 52 55.8
Gorai.011G214400 Gossypium raimondii HOM05D002899 ORTHO05D003850 2.9e-06 59.3 104 37.5
Nn2g12259 Nelumbo nucifera HOM05D004574 ORTHO05D005612 2.9e-06 59.3 106 42.5
PRCOL_00003671 Prasinoderma coloniale HOM05D002899 ORTHO05D003850 2.9e-06 59.3 58 56.9
RcHm_v2.0_Chr7g0218481 Rosa chinensis HOM05D002899 ORTHO05D003850 2.9e-06 59.3 108 35.2
CDE05G2637 Ceratophyllum demersum HOM05D004574 ORTHO05D005612 3.8e-06 58.9 52 59.6
Eucgr.L02096 Eucalyptus grandis HOM05D004574 ORTHO05D005612 4.9e-06 58.5 71 49.3
Sp3g08180 Schrenkiella parvula HOM05D004574 ORTHO05D005612 4.9e-06 58.5 160 33.8
DCAR_009032 Daucus carota HOM05D002899 ORTHO05D010792 6.4e-06 58.2 99 42.4
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 6.4e-06 58.2 60 48.3
AUR62041455 Chenopodium quinoa HOM05D004574 ORTHO05D005612 8.4e-06 57.8 50 56.0
SHI03242 Sapria himalayana HOM05D004574 ORTHO05D005612 8.4e-06 57.8 57 56.1


User provided reference genes

Program Settings