Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 7.6e-198 693.7 375 100.0
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 7.4e-68 261.9 397 46.3
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 2.4e-50 203.8 394 38.8
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 2.9e-48 196.8 425 35.8
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 3.2e-47 193.4 374 39.0
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 8.0e-46 188.7 408 38.2
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.0e-45 186.4 491 34.2
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.0e-32 145.2 356 37.9
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.7e-32 144.4 433 30.9
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 1.6e-22 111.3 152 50.0
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 5.7e-20 102.8 152 43.4
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 9.8e-20 102.1 147 46.9
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 9.8e-20 102.1 157 43.3
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 4.1e-18 96.7 175 40.6
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 7.0e-18 95.9 154 42.9
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 7.0e-18 95.9 176 40.3
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.6e-17 94.7 157 42.0
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.6e-17 94.7 158 43.7
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 1.6e-17 94.7 157 42.0
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 2.0e-17 94.4 157 41.4
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 2.0e-17 94.4 157 41.4
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 2.0e-17 94.4 157 42.0
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 2.0e-17 94.4 157 42.7
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 2.0e-17 94.4 158 44.3
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.7e-17 94.0 157 42.7
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 2.7e-17 94.0 157 42.0
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 2.7e-17 94.0 157 42.0
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 2.7e-17 94.0 157 41.4
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 2.7e-17 94.0 157 40.8
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 3.5e-17 93.6 157 40.8
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 3.5e-17 93.6 158 40.5
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 3.5e-17 93.6 158 40.5
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 3.5e-17 93.6 158 40.5
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 3.5e-17 93.6 158 40.5
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 3.5e-17 93.6 157 42.7
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 3.5e-17 93.6 157 41.4
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 3.5e-17 93.6 157 41.4
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 3.5e-17 93.6 157 43.3
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 4.6e-17 93.2 147 42.2
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 4.6e-17 93.2 147 42.2
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 4.6e-17 93.2 157 41.4
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 4.6e-17 93.2 176 38.1
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 4.6e-17 93.2 157 41.4
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 4.6e-17 93.2 157 42.7
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 5.9e-17 92.8 157 41.4
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 5.9e-17 92.8 157 42.0
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 5.9e-17 92.8 157 40.8
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 5.9e-17 92.8 157 41.4
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 5.9e-17 92.8 157 42.0
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 5.9e-17 92.8 157 42.0
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 5.9e-17 92.8 157 41.4
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 5.9e-17 92.8 157 42.7
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 5.9e-17 92.8 157 42.7
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 5.9e-17 92.8 153 43.1
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.0e-16 92.0 157 40.8
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 1.0e-16 92.0 157 41.4
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.0e-16 92.0 157 41.4
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.0e-16 92.0 157 41.4
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.0e-16 92.0 157 41.4
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 1.0e-16 92.0 157 42.0
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.0e-16 92.0 157 42.0
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 1.0e-16 92.0 157 41.4
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 1.0e-16 92.0 157 42.0
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 1.3e-16 91.7 157 40.1
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 1.3e-16 91.7 154 40.3
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.3e-16 91.7 157 41.4
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.3e-16 91.7 157 41.4
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.3e-16 91.7 157 41.4
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 1.3e-16 91.7 163 39.3
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 1.3e-16 91.7 158 42.4
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 1.3e-16 91.7 156 40.4
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 1.3e-16 91.7 156 40.4
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 1.7e-16 91.3 157 40.8
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.7e-16 91.3 157 41.4
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 1.7e-16 91.3 157 41.4
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.7e-16 91.3 157 42.0
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 1.7e-16 91.3 147 41.5
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.7e-16 91.3 157 40.1
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 1.7e-16 91.3 157 41.4
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.7e-16 91.3 157 41.4
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 1.7e-16 91.3 157 39.5
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 2.3e-16 90.9 157 42.0
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 2.3e-16 90.9 157 41.4
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 2.3e-16 90.9 147 42.9
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 2.3e-16 90.9 157 41.4
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 2.3e-16 90.9 158 43.0
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 2.9e-16 90.5 158 41.8
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 2.9e-16 90.5 147 41.5
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 2.9e-16 90.5 157 41.4
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 2.9e-16 90.5 157 40.1
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 2.9e-16 90.5 157 41.4
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 3.9e-16 90.1 157 40.8
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 3.9e-16 90.1 150 42.7
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 3.9e-16 90.1 147 42.2
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 5.0e-16 89.7 157 40.1
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 6.6e-16 89.4 171 40.4
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 6.6e-16 89.4 149 41.6
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 6.6e-16 89.4 148 43.2
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 8.6e-16 89.0 156 41.0
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 1.5e-15 88.2 144 41.0
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.9e-15 87.8 152 38.2
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 2.5e-15 87.4 158 42.4
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 3.3e-15 87.0 157 40.1
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 3.3e-15 87.0 149 41.6
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 4.3e-15 86.7 158 39.9
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 4.3e-15 86.7 140 38.6
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 4.3e-15 86.7 157 40.1
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 5.6e-15 86.3 142 40.8
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 1.2e-14 85.1 158 40.5
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.6e-14 84.7 361 27.7
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 2.1e-14 84.3 147 40.1
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.1e-14 84.3 147 40.1
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 2.8e-14 84.0 130 43.1
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.8e-14 84.0 140 38.6
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 3.6e-14 83.6 147 38.1
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 3.1e-13 80.5 155 34.2
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 4.0e-13 80.1 166 41.0
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 5.2e-13 79.7 148 37.8
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 2.0e-12 77.8 145 44.1
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 3.4e-12 77.0 155 29.0
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 3.4e-12 77.0 199 35.7
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 3.4e-12 77.0 153 31.4
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 5.8e-12 76.3 382 24.3
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 9.8e-12 75.5 149 33.6
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 1.3e-11 75.1 149 32.9
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 1.3e-11 75.1 223 33.6
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 4.9e-11 73.2 149 32.9
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 1.4e-10 71.6 102 37.3
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.2e-10 70.5 376 25.0
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 7.0e-10 69.3 148 39.9
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.0e-09 67.8 202 32.2
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 3.5e-09 67.0 198 31.8
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 6.0e-09 66.2 157 28.7
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 7.8e-09 65.9 203 25.6
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 1.3e-08 65.1 108 46.3
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 1.7e-08 64.7 147 38.8
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 2.3e-08 64.3 89 48.3
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 3.0e-08 63.9 104 35.6
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 3.3e-07 60.5 79 49.4
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 1.2e-06 58.5 79 49.4


User provided reference genes

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