Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G083 Micromonas commoda HOM05D005597 ORTHO05D007304 0.0e+00 1116.3 588 100.0
Mapoly0059s0091 Marchantia polymorpha HOM05D005597 ORTHO05D007304 2.7e-88 330.5 593 36.1
CBR_g38668 Chara braunii HOM05D005597 ORTHO05D007304 4.2e-86 323.2 589 36.8
Pp3c6_16240 Physcomitrium patens HOM05D005597 ORTHO05D007304 3.6e-85 320.1 598 36.5
AagrBONN_evm.TU.Sc2ySwM_228.833 Anthoceros agrestis HOM05D005597 ORTHO05D007304 1.1e-81 308.5 566 36.7
SMO143G0166 Selaginella moellendorffii HOM05D005597 ORTHO05D007304 3.3e-78 297.0 577 34.5
ATR0602G238 Amborella trichopoda HOM05D005597 ORTHO05D007304 2.3e-76 290.8 603 35.0
MBI07_g03181_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D007304 1.5e-75 288.1 549 36.1
HanXRQChr14g0442721 Helianthus annuus HOM05D005597 ORTHO05D007304 3.4e-75 287.0 599 33.1
Lalb_Chr01g0006811 Lupinus albus HOM05D005597 ORTHO05D007304 5.7e-75 286.2 595 34.3
FvH4_3g18450 Fragaria vesca HOM05D005597 ORTHO05D007304 1.3e-74 285.0 606 34.5
CsaV3_4G033140 Cucumis sativus L. HOM05D005597 ORTHO05D007304 4.9e-74 283.1 597 33.7
FAN11G3052 Fragaria x ananassa HOM05D005597 ORTHO05D007304 4.9e-74 283.1 602 33.4
TAR624G0947 Trochodendron aralioides HOM05D005597 ORTHO05D007304 6.4e-74 282.7 598 33.9
Aqoxy1G02067 Aquilegia oxysepala HOM05D005597 ORTHO05D007304 8.3e-74 282.3 600 33.5
ECA240G4584 Erigeron canadensis HOM05D000832 ORTHO05D000982 1.1e-73 282.0 609 32.7
Manes.03G102000 Manihot esculenta HOM05D005597 ORTHO05D007304 1.8e-73 281.2 609 32.8
Sed0009860 Sechium edule HOM05D005597 ORTHO05D007304 1.8e-73 281.2 553 34.4
PSO500G0209 Papaver somniferum HOM05D005597 ORTHO05D007304 2.4e-73 280.8 546 33.7
RcHm_v2.0_Chr5g0031201 Rosa chinensis HOM05D005597 ORTHO05D007304 4.1e-73 280.0 548 34.3
FAN21G1763 Fragaria x ananassa HOM05D005597 ORTHO05D007304 7.0e-73 279.3 597 33.8
ClCG11G017480 Citrullus lanatus HOM05D005597 ORTHO05D007304 9.2e-73 278.9 601 33.6
Lsat_1_v5_gn_9_100260 Lactuca sativa HOM05D005597 ORTHO05D007304 9.2e-73 278.9 607 33.3
PSO675G3712 Papaver somniferum HOM05D005597 ORTHO05D007304 9.2e-73 278.9 546 33.7
Thecc.07G110000 Theobroma cacao HOM05D005597 ORTHO05D007304 1.2e-72 278.5 606 33.5
Lj3g0024865 Lotus japonicus HOM05D005597 ORTHO05D007304 2.7e-72 277.3 595 33.3
arahy.Tifrunner.gnm1.ann1.Z1JPC4 Arachis hypogaea HOM05D005597 ORTHO05D007304 4.6e-72 276.6 602 34.1
CDE02G4663 Ceratophyllum demersum HOM05D005597 ORTHO05D007304 4.6e-72 276.6 594 33.5
PGR083G2138 Punica granatum HOM05D005597 ORTHO05D007304 4.6e-72 276.6 600 33.0
Actinidia12571 Actinidia chinensis HOM05D005597 ORTHO05D007304 5.9e-72 276.2 604 32.8
EL10Ac4g08334 Beta vulgaris HOM05D005597 ORTHO05D007304 5.9e-72 276.2 561 33.7
Atru.chr2.2174 Acer truncatum HOM05D005597 ORTHO05D007304 1.0e-71 275.4 606 33.7
Nn1g09131 Nelumbo nucifera HOM05D005597 ORTHO05D007304 1.0e-71 275.4 604 33.8
CSS0014594 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 1.3e-71 275.0 554 34.1
Os01g0209000 Oryza sativa ssp. japonica HOM05D005597 ORTHO05D007304 1.3e-71 275.0 551 34.3
TAR626G0744 Trochodendron aralioides HOM05D005597 ORTHO05D007304 1.3e-71 275.0 598 33.1
arahy.Tifrunner.gnm1.ann1.06PSEJ Arachis hypogaea HOM05D005597 ORTHO05D007304 1.7e-71 274.6 602 33.9
AUR62043187 Chenopodium quinoa HOM05D005597 ORTHO05D007304 1.7e-71 274.6 609 33.2
Cfa019573 Carpinus fangiana HOM05D005597 ORTHO05D007304 2.3e-71 274.2 548 34.5
Glyma.13G270500 Glycine max HOM05D005597 ORTHO05D007304 2.9e-71 273.9 550 33.6
QL08p026520 Quercus lobata HOM05D005597 ORTHO05D007304 3.9e-71 273.5 575 34.4
TPR.G19385 Trifolium pratense HOM05D005597 ORTHO05D007304 3.9e-71 273.5 610 33.0
FAN16G1691 Fragaria x ananassa HOM05D005597 ORTHO05D007304 5.0e-71 273.1 614 33.6
Rhsim06G0207300 Rhododendron simsii HOM05D005597 ORTHO05D007304 5.0e-71 273.1 603 32.7
Ciclev10019496m.g Citrus clementina HOM05D005597 ORTHO05D007304 8.6e-71 272.3 601 32.9
Hma1.2p1_1016F.1_g248150 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 8.6e-71 272.3 593 32.9
Glyma.12G229300 Glycine max HOM05D005597 ORTHO05D007304 1.9e-70 271.2 550 33.6
MD11G1261800 Malus domestica HOM05D005597 ORTHO05D007304 1.9e-70 271.2 549 34.4
PRCOL_00005636 Prasinoderma coloniale HOM05D005597 ORTHO05D007304 1.9e-70 271.2 609 35.0
GSVIVG01014208001 Vitis vinifera HOM05D005597 ORTHO05D007304 1.9e-70 271.2 539 34.5
MD03G1241900 Malus domestica HOM05D005597 ORTHO05D007304 3.3e-70 270.4 549 34.6
VMungo1080G1355 Vigna mungo HOM05D005597 ORTHO05D007304 3.3e-70 270.4 601 33.4
Eucgr.F01228 Eucalyptus grandis HOM05D005597 ORTHO05D007304 4.3e-70 270.0 545 33.6
Phvul.005G066500 Phaseolus vulgaris HOM05D005597 ORTHO05D007304 4.3e-70 270.0 600 33.7
CAN.G162.8 Capsicum annuum HOM05D005597 ORTHO05D007304 5.6e-70 269.6 545 32.7
Potri.011G110800 Populus trichocarpa HOM05D005597 ORTHO05D007304 5.6e-70 269.6 600 31.7
Sopen07g030770 Solanum pennellii HOM05D005597 ORTHO05D007304 5.6e-70 269.6 594 32.3
CiPaw.11G160900 Carya illinoinensis HOM05D005597 ORTHO05D007304 7.3e-70 269.2 549 33.9
Duzib213G0141 Durio zibethinus HOM05D005597 ORTHO05D007304 9.5e-70 268.9 607 33.1
Medtr2g076680 Medicago truncatula HOM05D005597 ORTHO05D007304 9.5e-70 268.9 600 32.7
Solyc07g062540.3 Solanum lycopersicum HOM05D005597 ORTHO05D007304 9.5e-70 268.9 594 32.3
Dinv14987 Davidia involucrata HOM05D005597 ORTHO05D007304 1.2e-69 268.5 601 32.8
Hund10564 Selenicereus undatus HOM05D005597 ORTHO05D007304 1.2e-69 268.5 592 31.9
Carub.0001s1664 Capsella rubella HOM05D005597 ORTHO05D007304 1.6e-69 268.1 577 34.8
Prupe.4G166500 Prunus persica HOM05D005597 ORTHO05D007304 1.6e-69 268.1 605 32.7
PGSC0003DMG400012388 Solanum tuberosum HOM05D005597 ORTHO05D007304 2.1e-69 267.7 594 32.3
TWI39G1070 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 2.1e-69 267.7 601 32.8
Zm00001eb120330 Zea mays HOM05D005597 ORTHO05D007304 2.1e-69 267.7 594 33.0
Cc05_g11200 Coffea canephora HOM05D005597 ORTHO05D007304 2.8e-69 267.3 551 32.7
Gorai.013G173400 Gossypium raimondii HOM05D005597 ORTHO05D007304 4.7e-69 266.5 608 32.2
Ca_03990_v3 Cicer arietinum L. HOM05D005597 ORTHO05D007304 6.2e-69 266.2 603 33.0
Duzib187G0678 Durio zibethinus HOM05D005597 ORTHO05D007304 6.2e-69 266.2 607 33.8
Gohir.A13G149000 Gossypium hirsutum HOM05D005597 ORTHO05D007304 6.2e-69 266.2 608 32.2
THA.LOC104812323 Tarenaya hassleriana HOM05D005597 ORTHO05D007304 8.0e-69 265.8 605 33.2
Thhalv10007218m.g Eutrema salsugineum HOM05D005597 ORTHO05D007304 2.3e-68 264.2 597 33.8
BcaB03g13027 Brassica carinata HOM05D005597 ORTHO05D007304 4.0e-68 263.5 549 34.4
BolC5t30227H Brassica oleracea HOM05D005597 ORTHO05D007304 4.0e-68 263.5 550 34.0
BcaB02g06666 Brassica carinata HOM05D005597 ORTHO05D007304 5.2e-68 263.1 597 33.8
CARHR017370 Cardamine hirsuta HOM05D005597 ORTHO05D007304 5.2e-68 263.1 611 33.7
A06p12800 Brassica napus HOM05D005597 ORTHO05D007304 6.8e-68 262.7 551 33.9
BraA06t24441Z Brassica rapa HOM05D005597 ORTHO05D007304 6.8e-68 262.7 551 33.9
Lj8A149T49 Lonicera japonica HOM05D005597 ORTHO05D007304 8.9e-68 262.3 609 31.5
TWI38G1600 Tripterygium wilfordii HOM05D005597 ORTHO05D007304 8.9e-68 262.3 598 31.8
SGA_v2.0_scaffold47G17797 Striga asiatica HOM05D005597 ORTHO05D007304 2.0e-67 261.2 604 32.6
C05p15120 Brassica napus HOM05D005597 ORTHO05D007304 2.6e-67 260.8 551 33.8
A08p31230 Brassica napus HOM05D005597 ORTHO05D007304 4.4e-67 260.0 550 33.6
BraA08t35046Z Brassica rapa HOM05D005597 ORTHO05D007304 4.4e-67 260.0 550 33.6
BolC8t49386H Brassica oleracea HOM05D005597 ORTHO05D007304 5.8e-67 259.6 550 33.8
BcaC05g25546 Brassica carinata HOM05D005597 ORTHO05D007304 9.8e-67 258.8 548 33.8
AT1G16900 Arabidopsis thaliana HOM05D005597 ORTHO05D007304 1.7e-66 258.1 603 33.3
MSTRG.12867 Avicennia marina HOM05D005597 ORTHO05D007304 1.7e-66 258.1 607 32.5
AL1G29070 Arabidopsis lyrata HOM05D005597 ORTHO05D007304 2.2e-66 257.7 552 33.5
FAN25G0069 Fragaria x ananassa HOM05D005597 ORTHO05D007304 2.9e-66 257.3 608 33.1
Sp1g15040 Schrenkiella parvula HOM05D005597 ORTHO05D007304 3.7e-66 256.9 600 33.8
C08p17610 Brassica napus HOM05D005597 ORTHO05D007304 1.1e-65 255.4 605 32.6
BcaC07g38821 Brassica carinata HOM05D005597 ORTHO05D007304 3.2e-65 253.8 604 32.5
Migut.H01992 Erythranthe guttata HOM05D005597 ORTHO05D007304 5.4e-65 253.1 607 31.8
COL.COLO4_17568 Corchorus olitorius HOM05D005597 ORTHO05D007304 2.0e-64 251.1 629 31.5
CSS0003229 Camellia sinensis var. sinensis HOM05D005597 ORTHO05D007304 3.5e-64 250.4 543 32.8
SalBow7G0883 Salvia bowleyana HOM05D005597 ORTHO05D007304 1.3e-63 248.4 522 34.7
Sabra11G0098300 Salix brachista HOM05D005597 ORTHO05D007304 3.0e-63 247.3 653 30.0
CANSAT35G0471 Cannabis sativa HOM05D005597 ORTHO05D007304 2.1e-61 241.1 529 34.4
Aa31LG7G1320 Aethionema arabicum HOM05D005597 ORTHO05D007304 5.2e-60 236.5 541 32.5
vmacro11932 Vaccinium macrocarpon HOM05D005597 ORTHO05D007304 1.5e-59 235.0 609 29.4
unitig_749.g13539 Utricularia gibba HOM05D005597 ORTHO05D007304 2.6e-59 234.2 603 30.7
HPP92_004052 Vanilla planifolia HOM05D005597 ORTHO05D007304 2.2e-58 231.1 591 31.5
Cfa025275 Carpinus fangiana HOM05D005597 ORTHO05D028637 8.6e-55 219.2 514 33.7
AUR62019570 Chenopodium quinoa HOM05D005597 ORTHO05D007304 8.6e-55 219.2 597 28.1
Haze_09335 Corylus avellana HOM05D005597 ORTHO05D007304 5.8e-51 206.5 504 31.9
Psat5g238320 Pisum sativum HOM05D005597 ORTHO05D007304 3.9e-47 193.7 416 35.8
MELO3C025637.2 Cucumis melo HOM05D005597 ORTHO05D007304 1.9e-46 191.4 431 32.0
Peaxi162Scf00069g02235 Petunia axillaris HOM05D005597 ORTHO05D007304 2.5e-46 191.0 438 31.7
Sc03g0010510 Simmondsia chinensis HOM05D005597 ORTHO05D007304 1.2e-45 188.7 398 33.4
Duzib213G0888 Durio zibethinus HOM05D005597 ORTHO05D007304 4.7e-45 186.8 472 31.1
Gohir.D13G153500 Gossypium hirsutum HOM05D005597 ORTHO05D007304 2.0e-43 181.4 430 31.2
DCAR_013152 Daucus carota HOM05D005597 ORTHO05D007304 9.9e-43 179.1 455 30.5
Hma1.2p1_1016F.1_g248140 Hydrangea macrophylla HOM05D005597 ORTHO05D007304 2.2e-42 177.9 455 31.9
Ah.06g185290 Amaranthus hybridus HOM05D005597 ORTHO05D007304 2.5e-38 164.5 401 31.4
Dinv18359 Davidia involucrata HOM05D005597 ORTHO05D007304 4.0e-36 157.1 369 35.8
SHI21382 Sapria himalayana HOM05D005597 ORTHO05D007304 3.2e-33 147.5 346 31.5
SEGI_23731 Sequoiadendron giganteum HOM05D005597 ORTHO05D007304 1.4e-28 132.1 236 34.3
SHI21385 Sapria himalayana HOM05D000105 ORTHO05D000023 2.4e-20 104.8 241 29.9
Nitab4.5_0001145g0050 Nicotiana tabacum HOM05D005597 ORTHO05D007304 1.3e-15 89.0 218 32.6
Cpa.g.sc97.103 Carica papaya HOM05D005597 ORTHO05D007304 3.3e-14 84.3 205 34.1
COL.COLO4_17572 Corchorus olitorius HOM05D005597 ORTHO05D007304 2.1e-13 81.6 88 45.5
Nitab4.5_0000246g0240 Nicotiana tabacum HOM05D005597 ORTHO05D007304 9.0e-12 76.3 203 31.0
Oeu059263.1 Olea europaea HOM05D005597 ORTHO05D007304 2.0e-11 75.1 169 36.1
Atru.chr2.2170 Acer truncatum HOM05D005597 ORTHO05D007304 5.9e-11 73.6 65 52.3
Actinidia09803 Actinidia chinensis HOM05D005597 ORTHO05D007304 6.1e-08 63.5 136 30.9
Gohir.A07G160600 Gossypium hirsutum HOM05D005597 ORTHO05D007304 3.9e-07 60.8 139 30.9
Actinidia24363 Actinidia chinensis HOM05D005597 ORTHO05D007304 1.9e-06 58.5 88 38.6
MBI01_g45400_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 1.9e-06 58.5 44 54.5
Gohir.A04G098250 Gossypium hirsutum HOM05D005597 ORTHO05D007304 2.5e-06 58.2 139 31.7
MBI01_g45631_MAGBIO Magnolia biondii HOM05D005597 ORTHO05D010488 3.3e-06 57.8 54 44.4
PRCOL_00000120 Prasinoderma coloniale HOM05D000722 ORTHO05D007176 4.3e-06 57.4 315 29.8


User provided reference genes

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