Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 3.6e-203 711.4 383 100.0
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 2.1e-33 147.5 322 29.5
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 6.0e-33 146.0 312 29.8
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 6.0e-33 146.0 316 30.1
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 7.9e-33 145.6 312 29.8
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 7.9e-33 145.6 253 32.4
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.0e-32 145.2 312 29.8
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 1.3e-32 144.8 325 31.1
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 1.8e-32 144.4 314 30.6
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.8e-32 144.4 322 28.9
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.3e-32 144.1 312 29.5
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 3.9e-32 143.3 300 39.7
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 3.9e-32 143.3 316 29.1
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 5.1e-32 142.9 329 29.8
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 6.7e-32 142.5 323 29.1
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 6.7e-32 142.5 316 30.1
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.1e-31 141.7 323 28.8
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 1.1e-31 141.7 264 31.8
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.5e-31 141.4 312 30.4
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 1.5e-31 141.4 280 30.4
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.9e-31 141.0 259 32.0
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 1.9e-31 141.0 324 29.3
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 2.5e-31 140.6 312 28.5
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 2.5e-31 140.6 313 28.1
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 4.3e-31 139.8 316 29.1
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 5.7e-31 139.4 254 31.1
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 7.4e-31 139.0 313 29.4
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 7.4e-31 139.0 253 31.2
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 7.4e-31 139.0 322 28.3
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 9.6e-31 138.7 325 29.5
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 9.6e-31 138.7 312 29.5
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 1.3e-30 138.3 327 29.7
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 1.3e-30 138.3 319 31.7
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 1.6e-30 137.9 313 30.7
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 1.6e-30 137.9 313 30.7
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 1.6e-30 137.9 314 29.6
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.6e-30 137.9 322 30.4
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 1.6e-30 137.9 322 30.4
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 2.1e-30 137.5 325 28.9
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.1e-30 137.5 316 28.8
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.1e-30 137.5 316 28.8
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 2.8e-30 137.1 325 29.2
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 3.7e-30 136.7 314 29.9
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 3.7e-30 136.7 317 29.7
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 4.8e-30 136.3 327 27.8
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 4.8e-30 136.3 312 29.5
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 6.3e-30 136.0 324 30.6
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 6.3e-30 136.0 316 28.8
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 8.2e-30 135.6 312 28.2
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 8.2e-30 135.6 322 29.5
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.1e-29 135.2 316 30.1
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 1.4e-29 134.8 322 29.2
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 1.4e-29 134.8 313 30.7
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.4e-29 134.8 324 28.4
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.4e-29 134.8 316 30.1
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.4e-29 134.8 327 27.5
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 1.8e-29 134.4 332 30.1
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 1.8e-29 134.4 318 32.4
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 1.8e-29 134.4 325 28.9
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 1.8e-29 134.4 325 28.9
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 1.8e-29 134.4 327 28.7
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 2.4e-29 134.0 320 28.1
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 2.4e-29 134.0 329 29.2
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 2.4e-29 134.0 318 28.6
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.4e-29 134.0 318 28.9
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 2.4e-29 134.0 313 30.4
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 2.4e-29 134.0 312 30.4
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.1e-29 133.7 312 28.5
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 4.1e-29 133.3 321 30.2
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 4.1e-29 133.3 313 30.0
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 4.1e-29 133.3 313 30.0
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 4.1e-29 133.3 312 28.2
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 5.3e-29 132.9 329 29.2
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 5.3e-29 132.9 321 28.3
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 6.9e-29 132.5 258 32.6
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 6.9e-29 132.5 315 31.7
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 6.9e-29 132.5 312 28.5
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 6.9e-29 132.5 325 31.1
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 6.9e-29 132.5 262 33.2
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 6.9e-29 132.5 313 28.4
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 6.9e-29 132.5 321 30.2
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 6.9e-29 132.5 321 30.2
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 6.9e-29 132.5 313 29.1
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 9.0e-29 132.1 313 30.0
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 9.0e-29 132.1 323 27.6
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.2e-28 131.7 319 29.5
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 1.2e-28 131.7 330 28.8
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.2e-28 131.7 315 28.3
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 1.2e-28 131.7 327 28.7
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.5e-28 131.3 318 28.0
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.5e-28 131.3 316 29.4
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.5e-28 131.3 313 28.8
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.5e-28 131.3 321 32.1
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.5e-28 131.3 325 27.7
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 2.0e-28 131.0 313 29.4
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 3.4e-28 130.2 324 29.0
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 4.5e-28 129.8 312 29.2
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 4.5e-28 129.8 325 27.7
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 4.5e-28 129.8 254 31.9
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 5.9e-28 129.4 329 29.2
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 5.9e-28 129.4 312 28.8
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 5.9e-28 129.4 328 28.4
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 5.9e-28 129.4 332 31.9
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 7.6e-28 129.0 328 29.0
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 7.6e-28 129.0 314 29.9
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 7.6e-28 129.0 326 32.2
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 7.6e-28 129.0 332 31.9
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 1.0e-27 128.6 311 29.6
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.0e-27 128.6 312 29.8
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 1.0e-27 128.6 254 29.5
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.3e-27 128.3 326 28.2
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 1.7e-27 127.9 312 28.2
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.7e-27 127.9 312 28.8
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 1.7e-27 127.9 317 29.3
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 1.7e-27 127.9 325 28.9
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 2.2e-27 127.5 312 29.5
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 2.9e-27 127.1 315 27.0
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 2.9e-27 127.1 312 28.8
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 3.8e-27 126.7 331 27.5
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 5.0e-27 126.3 321 28.3
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 5.0e-27 126.3 320 31.2
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 6.5e-27 125.9 323 28.2
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 8.5e-27 125.6 313 29.1
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 8.5e-27 125.6 276 27.5
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 8.5e-27 125.6 253 29.2
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.1e-26 125.2 321 29.0
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.9e-26 124.4 282 28.7
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 1.9e-26 124.4 318 31.4
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 3.2e-26 123.6 312 28.5
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.2e-26 123.6 315 27.6
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 4.2e-26 123.2 307 28.7
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 9.3e-26 122.1 319 26.6
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 2.1e-25 120.9 314 28.7
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 2.7e-25 120.6 250 30.4
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 2.3e-24 117.5 318 29.2
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 3.0e-24 117.1 347 26.8
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 3.9e-24 116.7 332 27.7
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 1.1e-23 115.2 295 27.5
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 2.5e-23 114.0 353 26.6
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 1.3e-22 111.7 244 26.6
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 2.8e-22 110.5 293 26.3
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 8.2e-22 109.0 325 27.7
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 3.1e-21 107.1 202 31.7
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 3.1e-21 107.1 325 27.7
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 6.9e-21 105.9 339 25.7
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 2.0e-20 104.4 273 29.3
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.9e-16 90.1 255 28.2
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 2.0e-15 87.8 312 24.7
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.2e-12 78.6 206 27.2
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 1.2e-12 78.6 305 26.2
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 9.4e-10 68.9 105 29.5
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 2.6e-07 60.8 233 25.8
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 5.7e-07 59.7 320 26.2
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 2.2e-06 57.8 145 28.3
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 4.8e-06 56.6 238 26.1


User provided reference genes

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