Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 9.3e-240 833.2 432 100.0
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 4.1e-171 605.1 431 72.9
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 4.2e-168 595.1 427 72.4
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 3.6e-167 592.0 429 70.9
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 1.7e-164 583.2 426 70.7
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 3.7e-164 582.0 427 71.2
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 1.0e-161 573.9 429 71.3
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 5.6e-160 568.2 427 70.7
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 1.4e-158 563.5 428 68.9
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 1.4e-158 563.5 428 69.4
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 2.3e-158 562.8 428 69.6
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 3.1e-158 562.4 428 68.7
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 6.8e-158 561.2 428 68.0
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 8.9e-158 560.8 428 68.5
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 1.2e-157 560.5 428 68.7
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 1.2e-157 560.5 428 68.5
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 1.5e-157 560.1 427 68.4
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 1.5e-157 560.1 428 68.0
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 2.0e-157 559.7 427 68.4
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 2.0e-157 559.7 428 67.1
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 2.6e-157 559.3 427 68.9
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 3.4e-157 558.9 428 69.2
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 3.4e-157 558.9 428 68.2
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 4.4e-157 558.5 428 68.7
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 4.4e-157 558.5 427 68.4
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 5.8e-157 558.1 459 64.5
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 5.8e-157 558.1 428 68.2
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 5.8e-157 558.1 428 68.2
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 7.5e-157 557.8 428 68.7
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 7.5e-157 557.8 428 67.8
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 7.5e-157 557.8 427 68.4
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 1.3e-156 557.0 428 68.5
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 1.7e-156 556.6 429 68.8
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 2.2e-156 556.2 428 68.5
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 2.9e-156 555.8 428 67.1
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 2.9e-156 555.8 428 67.5
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 2.9e-156 555.8 428 68.7
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 3.7e-156 555.4 428 68.0
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 3.7e-156 555.4 428 67.3
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 3.7e-156 555.4 428 69.2
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 4.9e-156 555.1 428 67.8
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 4.9e-156 555.1 428 68.0
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 6.4e-156 554.7 428 68.0
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 8.3e-156 554.3 428 67.8
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 8.3e-156 554.3 428 68.5
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 8.3e-156 554.3 428 67.8
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 1.1e-155 553.9 428 67.1
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.1e-155 553.9 428 68.0
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 1.4e-155 553.5 428 67.5
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 1.4e-155 553.5 428 67.1
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 1.4e-155 553.5 428 67.1
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 1.4e-155 553.5 428 67.5
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 1.9e-155 553.1 428 66.4
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 1.9e-155 553.1 428 67.8
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 2.4e-155 552.7 428 67.5
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 3.2e-155 552.4 417 69.3
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 3.2e-155 552.4 428 67.5
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 4.1e-155 552.0 428 66.6
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 4.1e-155 552.0 428 68.2
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 5.4e-155 551.6 428 67.1
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 5.4e-155 551.6 427 67.4
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 5.4e-155 551.6 428 66.6
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 7.0e-155 551.2 428 67.1
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 9.2e-155 550.8 427 67.7
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 1.6e-154 550.1 428 66.4
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 2.0e-154 549.7 428 68.0
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 2.7e-154 549.3 428 67.3
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 2.7e-154 549.3 428 67.1
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 2.7e-154 549.3 428 67.1
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 2.7e-154 549.3 428 67.5
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 3.5e-154 548.9 428 67.1
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 4.6e-154 548.5 428 67.3
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 4.6e-154 548.5 428 67.1
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 6.0e-154 548.1 427 67.4
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 6.0e-154 548.1 427 67.9
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 6.0e-154 548.1 428 66.8
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 6.0e-154 548.1 428 67.1
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 6.0e-154 548.1 426 66.0
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 7.8e-154 547.7 428 67.5
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 7.8e-154 547.7 428 67.1
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 7.8e-154 547.7 428 66.6
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 1.0e-153 547.4 428 66.6
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 1.0e-153 547.4 428 66.8
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 1.0e-153 547.4 428 67.3
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 1.3e-153 547.0 428 66.8
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.3e-153 547.0 428 67.1
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 1.3e-153 547.0 428 66.8
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.3e-153 547.0 424 67.5
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 1.3e-153 547.0 432 67.4
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 1.3e-153 547.0 428 67.3
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 2.3e-153 546.2 427 67.2
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 2.3e-153 546.2 428 67.1
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 2.3e-153 546.2 428 67.1
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 3.9e-153 545.4 428 67.1
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 3.9e-153 545.4 428 66.6
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 3.9e-153 545.4 428 66.8
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 3.9e-153 545.4 428 65.4
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 5.0e-153 545.0 428 66.6
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 6.6e-153 544.7 427 67.2
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 6.6e-153 544.7 428 66.8
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 8.6e-153 544.3 429 66.7
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 1.1e-152 543.9 428 66.8
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 1.1e-152 543.9 428 66.6
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 1.1e-152 543.9 428 66.6
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 1.9e-152 543.1 428 66.8
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 1.9e-152 543.1 428 66.8
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 3.3e-152 542.3 427 66.7
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 7.3e-152 541.2 454 64.5
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 1.2e-151 540.4 428 66.4
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 1.2e-151 540.4 427 66.0
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 2.1e-151 539.7 434 66.1
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 1.8e-150 536.6 427 65.8
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 5.2e-150 535.0 428 65.7
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 1.5e-149 533.5 428 65.4
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.0e-149 533.1 427 66.7
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 3.4e-149 532.3 437 65.7
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 4.9e-148 528.5 401 69.8
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 5.4e-147 525.0 437 64.1
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 9.2e-147 524.2 426 64.6
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 1.0e-145 520.8 428 65.2
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 8.6e-145 517.7 428 65.2
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.9e-144 516.5 428 65.2
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.1e-143 513.1 428 64.7
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.8e-143 512.7 428 65.0
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.8e-142 510.0 378 70.6
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 4.9e-132 475.3 405 63.2
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 5.8e-117 425.2 417 54.7
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 1.3e-116 424.1 348 64.7
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 4.8e-111 405.6 329 67.2
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 4.5e-109 399.1 476 51.5
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.0e-105 387.9 319 64.6
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 5.7e-104 382.1 316 64.2
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 9.0e-94 348.2 259 69.5
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 1.9e-91 340.5 259 68.3
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 5.5e-91 339.0 259 69.5
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 3.6e-90 336.3 271 65.3
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 7.2e-83 312.0 226 70.4
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 5.7e-72 275.8 393 46.1
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 2.5e-67 260.4 406 40.9
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 1.5e-64 251.1 204 67.6
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 2.7e-61 240.4 202 63.4
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 2.7e-61 240.4 289 46.0
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 2.6e-56 223.8 169 68.0
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 2.2e-55 220.7 180 68.3
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 2.4e-54 217.2 170 66.5
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 2.3e-49 200.7 220 52.3
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 2.0e-48 197.6 205 54.1
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 2.9e-47 193.7 205 54.1
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 8.3e-47 192.2 205 53.7
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 7.8e-45 185.7 222 49.5
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 4.7e-42 176.4 207 49.8
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 8.9e-41 172.2 190 55.8
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 1.5e-40 171.4 115 73.9
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.9e-35 154.5 112 69.6
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.1e-30 138.7 82 81.7
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 4.3e-27 126.7 78 75.6
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 2.6e-24 117.5 127 45.7
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 4.0e-17 93.6 67 71.6
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 7.1e-14 82.8 57 73.7
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 1.0e-12 79.0 82 51.2
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 1.3e-12 78.6 126 44.4
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 5.1e-12 76.6 65 64.6
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 5.1e-12 76.6 66 65.2
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 1.3e-10 72.0 69 63.8
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 1.3e-10 72.0 73 46.6
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 2.1e-10 71.2 198 32.3
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 3.6e-10 70.5 78 48.7
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 6.2e-10 69.7 51 66.7
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 5.3e-09 66.6 37 91.9
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 9.0e-09 65.9 137 38.0
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 1.2e-08 65.5 42 78.6
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 9.3e-06 55.8 38 71.1


User provided reference genes

Program Settings