Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO06G044 Micromonas commoda HOM05D003572 ORTHO05D004118 0.0e+00 1698.3 933 100.0
HPP92_022819 Vanilla planifolia HOM05D003572 ORTHO05D004118 1.1e-27 129.8 224 32.1
SGA_v2.0_scaffold168G38575 Striga asiatica HOM05D003572 ORTHO05D004118 3.2e-27 128.3 256 30.1
SMO367G0931 Selaginella moellendorffii HOM05D003572 ORTHO05D004118 7.1e-27 127.1 366 28.7
MBI15_g38528_MAGBIO Magnolia biondii HOM05D003572 ORTHO05D004118 3.5e-26 124.8 251 30.3
Mapoly0009s0054 Marchantia polymorpha HOM05D003572 ORTHO05D004118 1.0e-25 123.2 193 35.2
SalBow2G3269 Salvia bowleyana HOM05D003572 ORTHO05D004118 1.0e-25 123.2 257 28.8
SalBow8G1231 Salvia bowleyana HOM05D003572 ORTHO05D004118 1.3e-25 122.9 256 28.9
Sc03g0011580 Simmondsia chinensis HOM05D003572 ORTHO05D004118 1.3e-25 122.9 201 33.8
vmacro09625 Vaccinium macrocarpon HOM05D003572 ORTHO05D004118 2.3e-25 122.1 197 32.0
Eucgr.F02031 Eucalyptus grandis HOM05D003572 ORTHO05D004118 3.9e-25 121.3 255 30.6
Pp3c16_9890 Physcomitrium patens HOM05D003572 ORTHO05D004118 3.9e-25 121.3 208 33.2
CDE10G0288 Ceratophyllum demersum HOM05D003572 ORTHO05D004118 5.1e-25 120.9 209 32.1
Nitab4.5_0003328g0060 Nicotiana tabacum HOM05D003572 ORTHO05D004118 5.1e-25 120.9 193 32.6
Pp3c25_3080 Physcomitrium patens HOM05D003572 ORTHO05D004118 6.6e-25 120.6 205 34.1
Peaxi162Scf00139g01024 Petunia axillaris HOM05D003572 ORTHO05D004118 1.1e-24 119.8 193 31.1
Prupe.6G027100 Prunus persica HOM05D003572 ORTHO05D004118 1.1e-24 119.8 260 30.4
EL10Ac4g07535 Beta vulgaris HOM05D003572 ORTHO05D004118 1.9e-24 119.0 234 29.9
Rhsim04G0010700 Rhododendron simsii HOM05D003572 ORTHO05D004118 1.9e-24 119.0 239 28.9
Lalb_Chr04g0247781 Lupinus albus HOM05D003572 ORTHO05D004118 2.5e-24 118.6 251 29.1
PSO675G6577 Papaver somniferum HOM05D003572 ORTHO05D004118 4.3e-24 117.9 197 32.0
Carub.0008s1630 Capsella rubella HOM05D003572 ORTHO05D004118 5.6e-24 117.5 247 30.4
AUR62035673 Chenopodium quinoa HOM05D003572 ORTHO05D004118 5.6e-24 117.5 193 33.7
Ca_12448_v3 Cicer arietinum L. HOM05D003572 ORTHO05D004118 5.6e-24 117.5 255 29.4
Lj6g0006011 Lotus japonicus HOM05D003572 ORTHO05D004118 5.6e-24 117.5 255 28.6
Aa31LG3G11870 Aethionema arabicum HOM05D003572 ORTHO05D004118 9.6e-24 116.7 255 30.2
Cpa.g.sc12.136 Carica papaya HOM05D003572 ORTHO05D004118 9.6e-24 116.7 243 28.4
Lalb_Chr15g0082271 Lupinus albus HOM05D003572 ORTHO05D004118 9.6e-24 116.7 258 30.2
PSO541G1869 Papaver somniferum HOM05D003572 ORTHO05D004118 9.6e-24 116.7 200 31.5
MELO3C024962.2 Cucumis melo HOM05D003572 ORTHO05D004118 1.2e-23 116.3 251 29.1
Thhalv10012921m.g Eutrema salsugineum HOM05D003572 ORTHO05D004118 1.2e-23 116.3 255 30.6
Hma1.2p1_0193F.1_g083875 Hydrangea macrophylla HOM05D003572 ORTHO05D004118 1.2e-23 116.3 255 28.6
Lj8A180T94 Lonicera japonica HOM05D003572 ORTHO05D004118 1.2e-23 116.3 193 31.6
HPP92_015737 Vanilla planifolia HOM05D003572 ORTHO05D004118 1.2e-23 116.3 187 32.6
Glyma.14G011900 Glycine max HOM05D003572 ORTHO05D004118 1.6e-23 115.9 255 29.8
Ciclev10007697m.g Citrus clementina HOM05D003572 ORTHO05D004118 2.1e-23 115.5 197 31.5
Haze_09859 Corylus avellana HOM05D003572 ORTHO05D004118 2.1e-23 115.5 190 31.6
Glyma.02G302300 Glycine max HOM05D003572 ORTHO05D004118 2.1e-23 115.5 255 30.2
Sp6g17810 Schrenkiella parvula HOM05D003572 ORTHO05D004118 2.1e-23 115.5 255 30.2
AL8G31520 Arabidopsis lyrata HOM05D003572 ORTHO05D004118 2.8e-23 115.2 255 30.2
CARHR269330 Cardamine hirsuta HOM05D003572 ORTHO05D004118 2.8e-23 115.2 261 29.1
COL.COLO4_29131 Corchorus olitorius HOM05D003572 ORTHO05D004118 2.8e-23 115.2 193 34.2
Sed0025611 Sechium edule HOM05D003572 ORTHO05D004118 2.8e-23 115.2 193 31.1
MSTRG.7013 Avicennia marina HOM05D003572 ORTHO05D004118 3.6e-23 114.8 239 30.5
BcaC04g20184 Brassica carinata HOM05D003572 ORTHO05D004118 3.6e-23 114.8 192 32.3
A10p13160 Brassica napus HOM05D003572 ORTHO05D004118 3.6e-23 114.8 192 32.3
C09p46940 Brassica napus HOM05D003572 ORTHO05D004118 3.6e-23 114.8 192 32.3
BolC9t57542H Brassica oleracea HOM05D003572 ORTHO05D004118 3.6e-23 114.8 192 32.3
BraA10t43413Z Brassica rapa HOM05D003572 ORTHO05D004118 3.6e-23 114.8 192 32.3
CAN.G492.54 Capsicum annuum HOM05D003572 ORTHO05D004118 3.6e-23 114.8 193 31.6
DCAR_013253 Daucus carota HOM05D003572 ORTHO05D004118 3.6e-23 114.8 193 29.5
Oeu049418.3 Olea europaea HOM05D003572 ORTHO05D004118 3.6e-23 114.8 255 29.4
Phvul.006G059218 Phaseolus vulgaris HOM05D003572 ORTHO05D004118 3.6e-23 114.8 201 31.3
RcHm_v2.0_Chr5g0075891 Rosa chinensis HOM05D003572 ORTHO05D004118 3.6e-23 114.8 243 30.9
THA.LOC104813455 Tarenaya hassleriana HOM05D003572 ORTHO05D004118 3.6e-23 114.8 255 29.8
BcaB08g35961 Brassica carinata HOM05D003572 ORTHO05D004118 4.7e-23 114.4 255 29.8
Migut.M01630 Erythranthe guttata HOM05D003572 ORTHO05D004118 4.7e-23 114.4 255 28.6
Nitab4.5_0005478g0010 Nicotiana tabacum HOM05D003572 ORTHO05D004118 4.7e-23 114.4 252 28.2
Os06g0297700 Oryza sativa ssp. japonica HOM05D003572 ORTHO05D004118 4.7e-23 114.4 484 25.0
TPR.G17952 Trifolium pratense HOM05D003572 ORTHO05D004118 4.7e-23 114.4 255 27.1
AT5G55960 Arabidopsis thaliana HOM05D003572 ORTHO05D004118 6.2e-23 114.0 255 29.4
AUR62017135 Chenopodium quinoa HOM05D003572 ORTHO05D004118 6.2e-23 114.0 193 32.1
Dinv10359 Davidia involucrata HOM05D003572 ORTHO05D004118 6.2e-23 114.0 255 27.8
FvH4_3g42400 Fragaria vesca HOM05D003572 ORTHO05D004118 6.2e-23 114.0 252 30.6
FAN11G1338 Fragaria x ananassa HOM05D003572 ORTHO05D004118 6.2e-23 114.0 252 30.6
FAN25G0718 Fragaria x ananassa HOM05D003572 ORTHO05D004118 6.2e-23 114.0 252 30.6
FAN28G0643 Fragaria x ananassa HOM05D003572 ORTHO05D004118 6.2e-23 114.0 252 30.6
Lsat_1_v5_gn_7_114121 Lactuca sativa HOM05D003572 ORTHO05D004118 6.2e-23 114.0 200 31.5
Psat5g166240 Pisum sativum HOM05D003572 ORTHO05D004118 6.2e-23 114.0 255 29.0
VMungo0540G1677 Vigna mungo HOM05D003572 ORTHO05D004118 6.2e-23 114.0 259 28.6
CSS0008919 Camellia sinensis var. sinensis HOM05D003572 ORTHO05D004118 8.1e-23 113.6 197 29.9
MD11G1036300 Malus domestica HOM05D003572 ORTHO05D004118 8.1e-23 113.6 251 29.5
Solyc07g065790.2 Solanum lycopersicum HOM05D003572 ORTHO05D004118 8.1e-23 113.6 193 30.6
Sopen07g033980 Solanum pennellii HOM05D003572 ORTHO05D004118 8.1e-23 113.6 193 30.6
TWI38G2019 Tripterygium wilfordii HOM05D003572 ORTHO05D004118 8.1e-23 113.6 206 30.6
FAN16G1359 Fragaria x ananassa HOM05D003572 ORTHO05D004118 1.1e-22 113.2 256 31.2
Lj1C893T10 Lonicera japonica HOM05D003572 ORTHO05D004118 1.1e-22 113.2 197 32.0
Phvul.008G280900 Phaseolus vulgaris HOM05D003572 ORTHO05D004118 1.1e-22 113.2 243 28.8
PGSC0003DMG400022268 Solanum tuberosum HOM05D003572 ORTHO05D004118 1.1e-22 113.2 193 30.1
CSS0029598 Camellia sinensis var. sinensis HOM05D003572 ORTHO05D004118 1.4e-22 112.8 247 27.9
Hund23058 Selenicereus undatus HOM05D003572 ORTHO05D004118 1.4e-22 112.8 226 30.5
GSVIVG01014734001 Vitis vinifera HOM05D003572 ORTHO05D004118 1.4e-22 112.8 200 31.5
AL840U10010 Arabidopsis lyrata HOM05D003572 ORTHO05D004118 1.8e-22 112.5 249 30.1
Cfa016928 Carpinus fangiana HOM05D003572 ORTHO05D004118 1.8e-22 112.5 190 31.1
Glyma.08G332200 Glycine max HOM05D003572 ORTHO05D004118 1.8e-22 112.5 254 27.2
SEGI_11880 Sequoiadendron giganteum HOM05D003572 ORTHO05D004118 1.8e-22 112.5 496 24.0
Solyc10g005790.3 Solanum lycopersicum HOM05D003572 ORTHO05D004118 1.8e-22 112.5 193 30.6
Sopen10g001760 Solanum pennellii HOM05D003572 ORTHO05D004118 1.8e-22 112.5 193 30.6
Cc05_g15240 Coffea canephora HOM05D003572 ORTHO05D004118 2.4e-22 112.1 197 30.5
Actinidia30380 Actinidia chinensis HOM05D003572 ORTHO05D004118 3.1e-22 111.7 239 27.2
ATR0751G249 Amborella trichopoda HOM05D003572 ORTHO05D004118 3.1e-22 111.7 199 32.7
FAN21G2470 Fragaria x ananassa HOM05D003572 ORTHO05D004118 3.1e-22 111.7 252 30.2
PGSC0003DMG400008691 Solanum tuberosum HOM05D003572 ORTHO05D004118 3.1e-22 111.7 193 30.6
ATR0824G053 Amborella trichopoda HOM05D003572 ORTHO05D004118 4.0e-22 111.3 239 28.9
Aqoxy1G01991 Aquilegia oxysepala HOM05D003572 ORTHO05D004118 4.0e-22 111.3 197 30.5
MSTRG.15805 Avicennia marina HOM05D003572 ORTHO05D004118 4.0e-22 111.3 201 30.3
TWI39G0630 Tripterygium wilfordii HOM05D003572 ORTHO05D004118 6.9e-22 110.5 197 30.5
Nitab4.5_0010643g0010 Nicotiana tabacum HOM05D003572 ORTHO05D004118 9.0e-22 110.2 193 30.6
CiPaw.11G206400 Carya illinoinensis HOM05D003572 ORTHO05D004118 1.2e-21 109.8 191 30.9
CAN.G623.35 Capsicum annuum HOM05D003572 ORTHO05D004118 1.5e-21 109.4 193 30.1
Nitab4.5_0000163g0100 Nicotiana tabacum HOM05D003572 ORTHO05D004118 1.5e-21 109.4 193 30.1
COL.COLO4_07733 Corchorus olitorius HOM05D003572 ORTHO05D004118 2.0e-21 109.0 259 29.3
Sed0013758 Sechium edule HOM05D003572 ORTHO05D004118 2.0e-21 109.0 509 25.1
unitig_62.g23309 Utricularia gibba HOM05D003572 ORTHO05D004118 2.0e-21 109.0 250 28.4
arahy.Tifrunner.gnm1.ann1.6L5JRP Arachis hypogaea HOM05D003572 ORTHO05D004118 2.6e-21 108.6 256 27.7
arahy.Tifrunner.gnm1.ann1.IVGW5G Arachis hypogaea HOM05D003572 ORTHO05D004118 2.6e-21 108.6 256 27.7
ECA236G5010 Erigeron canadensis HOM05D003572 ORTHO05D004118 2.6e-21 108.6 197 29.4
Sopen02g026440 Solanum pennellii HOM05D003572 ORTHO05D004118 2.6e-21 108.6 193 29.5
Sopen12g007720 Solanum pennellii HOM05D003572 ORTHO05D004118 2.6e-21 108.6 193 29.5
THA.LOC104811681 Tarenaya hassleriana HOM05D003572 ORTHO05D004118 2.6e-21 108.6 183 31.7
TAR629G3234 Trochodendron aralioides HOM05D003572 ORTHO05D004118 2.6e-21 108.6 194 30.4
Nitab4.5_0000756g0060 Nicotiana tabacum HOM05D003572 ORTHO05D004118 3.4e-21 108.2 193 30.6
PGR083G0391 Punica granatum HOM05D003572 ORTHO05D004118 3.4e-21 108.2 243 27.6
Rhsim06G0232300 Rhododendron simsii HOM05D003572 ORTHO05D004118 3.4e-21 108.2 274 26.6
Thecc.07G008400 Theobroma cacao HOM05D003572 ORTHO05D004118 4.4e-21 107.8 197 29.4
Gohir.A01G093400 Gossypium hirsutum HOM05D003572 ORTHO05D004118 5.8e-21 107.5 255 28.2
Gohir.D01G077900 Gossypium hirsutum HOM05D003572 ORTHO05D004118 5.8e-21 107.5 255 28.2
Gorai.002G102500 Gossypium raimondii HOM05D003572 ORTHO05D004118 5.8e-21 107.5 255 28.2
Thecc.04G018200 Theobroma cacao HOM05D003572 ORTHO05D004118 5.8e-21 107.5 193 32.6
Lsat_1_v5_gn_5_1301 Lactuca sativa HOM05D003572 ORTHO05D004118 7.6e-21 107.1 198 30.8
PGSC0003DMG400029789 Solanum tuberosum HOM05D003572 ORTHO05D004118 7.6e-21 107.1 193 29.0
Dinv40882 Davidia involucrata HOM05D003572 ORTHO05D004118 9.9e-21 106.7 180 31.7
Duzib268G0100 Durio zibethinus HOM05D003572 ORTHO05D004118 9.9e-21 106.7 247 28.3
Manes.15G057400 Manihot esculenta HOM05D003572 ORTHO05D004118 9.9e-21 106.7 245 29.4
CANSAT11G0525 Cannabis sativa HOM05D003572 ORTHO05D004118 1.3e-20 106.3 465 23.2
CDE10G0278 Ceratophyllum demersum HOM05D003572 ORTHO05D004118 1.7e-20 105.9 463 23.1
MBI10_g15886_MAGBIO Magnolia biondii HOM05D003572 ORTHO05D004118 1.7e-20 105.9 239 28.0
Potri.001G370500 Populus trichocarpa HOM05D003572 ORTHO05D004118 1.7e-20 105.9 255 27.1
unitig_85.g27353 Utricularia gibba HOM05D003572 ORTHO05D004118 2.2e-20 105.5 251 29.1
Gohir.A07G223700 Gossypium hirsutum HOM05D003572 ORTHO05D004118 2.9e-20 105.1 193 32.1
Gohir.D07G230800 Gossypium hirsutum HOM05D003572 ORTHO05D004118 2.9e-20 105.1 193 32.1
Gorai.001G265900 Gossypium raimondii HOM05D003572 ORTHO05D004118 2.9e-20 105.1 193 32.1
ECA246G4635 Erigeron canadensis HOM05D003572 ORTHO05D004118 4.9e-20 104.4 198 29.8
Nitab4.5_0000152g0390 Nicotiana tabacum HOM05D003572 ORTHO05D004118 4.9e-20 104.4 240 27.1
Pp3c10_11290 Physcomitrium patens HOM05D003572 ORTHO05D004118 4.9e-20 104.4 195 30.8
Duzib213G0839 Durio zibethinus HOM05D003572 ORTHO05D004118 8.4e-20 103.6 194 29.4
TAR374G1497 Trochodendron aralioides HOM05D003572 ORTHO05D004118 8.4e-20 103.6 193 31.1
Sabra16G0243700 Salix brachista HOM05D003572 ORTHO05D004118 1.4e-19 102.8 259 27.8
Manes.03G143300 Manihot esculenta HOM05D003572 ORTHO05D004118 1.9e-19 102.4 255 26.3
CsaV3_7G023890 Cucumis sativus L. HOM05D003572 ORTHO05D004118 3.2e-19 101.7 505 25.0
HanXRQChr05g0160331 Helianthus annuus HOM05D003572 ORTHO05D004118 4.2e-19 101.3 255 25.9
AUR62035672 Chenopodium quinoa HOM05D003572 ORTHO05D004118 7.1e-19 100.5 170 32.4
HanXRQChr13g0408391 Helianthus annuus HOM05D003572 ORTHO05D004118 7.1e-19 100.5 243 26.7
Nn1g07756 Nelumbo nucifera HOM05D003572 ORTHO05D004118 9.3e-19 100.1 170 33.5
QL08p003220 Quercus lobata HOM05D003572 ORTHO05D004118 9.3e-19 100.1 255 27.1
FvH4_6g51530 Fragaria vesca HOM05D003572 ORTHO05D004118 2.1e-18 99.0 193 29.0
GSVIVG01032396001 Vitis vinifera HOM05D003572 ORTHO05D004118 2.7e-18 98.6 496 24.8
Zm00001eb380950 Zea mays HOM05D003572 ORTHO05D004118 2.7e-18 98.6 170 34.1
ClCG09G021500 Citrullus lanatus HOM05D003572 ORTHO05D004118 3.5e-18 98.2 505 24.2
Duzib170G0647 Durio zibethinus HOM05D003572 ORTHO05D004118 4.6e-18 97.8 474 23.6
Lsat_1_v5_gn_9_89020 Lactuca sativa HOM05D003572 ORTHO05D004118 7.8e-18 97.1 241 29.0
MD17G1026100 Malus domestica HOM05D003572 ORTHO05D004118 1.0e-17 96.7 452 24.8
vmacro11611 Vaccinium macrocarpon HOM05D003572 ORTHO05D004118 1.7e-17 95.9 170 30.0
SHI54759 Sapria himalayana HOM05D003572 ORTHO05D004118 2.3e-17 95.5 216 26.4
SHI54992 Sapria himalayana HOM05D003572 ORTHO05D004118 2.3e-17 95.5 216 26.4
Glyma.18G074700 Glycine max HOM05D003572 ORTHO05D004118 5.1e-17 94.4 229 27.9
Hund01872 Selenicereus undatus HOM05D003572 ORTHO05D004118 1.5e-16 92.8 467 24.6
arahy.Tifrunner.gnm1.ann1.JS1PTX Arachis hypogaea HOM05D003572 ORTHO05D004118 5.6e-16 90.9 228 27.6
Duzib187G1329 Durio zibethinus HOM05D003572 ORTHO05D004118 9.6e-16 90.1 236 27.1
arahy.Tifrunner.gnm1.ann1.YJXG1G Arachis hypogaea HOM05D003572 ORTHO05D004118 1.6e-15 89.4 216 27.3
VMungo0647G1643 Vigna mungo HOM05D003572 ORTHO05D004118 1.6e-15 89.4 234 27.4
CDE04G1594 Ceratophyllum demersum HOM05D003572 ORTHO05D004118 2.1e-15 89.0 173 32.4
Lalb_Chr20g0114041 Lupinus albus HOM05D003572 ORTHO05D004118 2.8e-15 88.6 199 26.1
SalBow2G0117 Salvia bowleyana HOM05D003572 ORTHO05D004118 8.1e-15 87.0 218 26.6
HPP92_020244 Vanilla planifolia HOM05D003572 ORTHO05D004118 8.1e-15 87.0 816 23.0
Dinv10358 Davidia involucrata HOM05D003572 ORTHO05D004118 1.4e-14 86.3 176 29.5
Prupe.3G292600 Prunus persica HOM05D003572 ORTHO05D004118 3.1e-14 85.1 487 24.8
vmacro09626 Vaccinium macrocarpon HOM05D003572 ORTHO05D004118 2.6e-13 82.0 434 23.0
CSS0025905 Camellia sinensis var. sinensis HOM05D003572 ORTHO05D004118 9.9e-13 80.1 177 26.0
Peaxi162Scf00006g00528 Petunia axillaris HOM05D003572 ORTHO05D004118 1.3e-12 79.7 121 34.7
CSS0004561 Camellia sinensis var. sinensis HOM05D003572 ORTHO05D004118 1.7e-12 79.3 177 26.0
ECA240G0067 Erigeron canadensis HOM05D003572 ORTHO05D004118 2.2e-12 79.0 488 22.5
AL8G31540 Arabidopsis lyrata HOM05D003572 ORTHO05D004118 3.8e-12 78.2 118 34.7
QL08p003231 Quercus lobata HOM05D003572 ORTHO05D004118 1.4e-11 76.3 179 27.9
CBR_g48491 Chara braunii HOM05D000019 ORTHO05D000353 4.2e-11 74.7 757 23.8
Atru.chr2.3831 Acer truncatum HOM05D003572 ORTHO05D004118 8.7e-09 67.0 101 34.7
FAN05G0557 Fragaria x ananassa HOM05D001812 ORTHO05D001874 1.1e-08 66.6 554 22.9
Nn4g22621 Nelumbo nucifera HOM05D003572 ORTHO05D004118 2.5e-08 65.5 237 27.4
Solyc12g015810.3 Solanum lycopersicum HOM05D003572 ORTHO05D004118 1.1e-06 60.1 104 25.0


User provided reference genes

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