Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 1.0e-213 746.5 384 100.0
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 6.2e-70 268.9 428 41.1
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 4.9e-67 259.2 444 38.7
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 1.2e-65 254.6 394 39.1
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 5.1e-64 249.2 398 38.9
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 8.7e-64 248.4 392 39.5
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 1.6e-62 244.2 397 37.3
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 1.6e-62 244.2 397 37.0
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 2.1e-62 243.8 392 38.0
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 2.1e-62 243.8 400 39.5
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 2.1e-62 243.8 414 37.7
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 1.1e-61 241.5 393 37.7
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 1.8e-61 240.7 396 38.9
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 3.1e-61 240.0 388 37.1
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 4.0e-61 239.6 388 36.9
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 5.3e-61 239.2 390 37.2
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 9.0e-61 238.4 394 38.1
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 2.0e-60 237.3 395 35.9
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 2.6e-60 236.9 395 37.0
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 2.6e-60 236.9 396 37.6
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 4.5e-60 236.1 389 36.2
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 5.8e-60 235.7 378 38.4
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 5.8e-60 235.7 394 37.1
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 7.6e-60 235.3 389 36.5
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 7.6e-60 235.3 391 37.6
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 1.3e-59 234.6 396 37.6
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.3e-59 234.6 396 36.4
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 1.7e-59 234.2 391 37.6
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 2.2e-59 233.8 392 37.5
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 2.2e-59 233.8 398 36.2
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 2.9e-59 233.4 395 35.7
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 3.8e-59 233.0 391 37.1
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 6.4e-59 232.3 391 37.3
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 6.4e-59 232.3 391 37.1
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 8.4e-59 231.9 400 35.8
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 8.4e-59 231.9 393 37.9
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 8.4e-59 231.9 389 38.0
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 8.4e-59 231.9 391 38.1
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 1.4e-58 231.1 397 36.0
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 1.9e-58 230.7 395 37.5
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 1.9e-58 230.7 393 35.1
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 2.4e-58 230.3 392 36.0
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 3.2e-58 229.9 394 35.3
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 3.2e-58 229.9 392 37.5
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 3.2e-58 229.9 392 37.5
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 3.2e-58 229.9 391 37.3
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 3.2e-58 229.9 403 35.7
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 5.4e-58 229.2 393 36.4
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 7.1e-58 228.8 401 37.7
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 7.1e-58 228.8 394 37.1
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 7.1e-58 228.8 391 36.3
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 7.1e-58 228.8 400 36.5
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 9.3e-58 228.4 397 36.3
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 1.2e-57 228.0 393 35.6
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 1.2e-57 228.0 392 34.7
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 1.2e-57 228.0 395 35.9
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 2.1e-57 227.3 394 35.5
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 2.7e-57 226.9 398 35.4
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 2.7e-57 226.9 394 35.5
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 2.7e-57 226.9 395 35.2
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 3.5e-57 226.5 390 35.1
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 4.6e-57 226.1 394 35.5
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 4.6e-57 226.1 394 35.5
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 6.0e-57 225.7 391 35.3
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 6.0e-57 225.7 391 35.5
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 7.9e-57 225.3 393 36.4
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 7.9e-57 225.3 390 36.2
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 1.0e-56 224.9 383 35.5
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 1.3e-56 224.6 391 35.0
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 1.3e-56 224.6 395 35.7
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 1.8e-56 224.2 394 35.8
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 2.3e-56 223.8 397 34.8
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 2.3e-56 223.8 398 35.4
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 2.3e-56 223.8 391 35.8
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 5.1e-56 222.6 400 36.0
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 6.7e-56 222.2 394 35.3
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 6.7e-56 222.2 397 35.3
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 8.7e-56 221.9 391 35.5
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 1.1e-55 221.5 393 34.9
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 1.1e-55 221.5 390 35.9
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 1.1e-55 221.5 392 36.0
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 1.5e-55 221.1 389 36.2
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 1.9e-55 220.7 395 35.4
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 2.5e-55 220.3 391 34.5
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 2.5e-55 220.3 394 36.0
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 3.3e-55 219.9 394 35.5
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 4.3e-55 219.5 391 33.5
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 7.4e-55 218.8 341 38.7
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 7.4e-55 218.8 396 35.6
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 1.4e-53 214.5 400 35.2
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 1.8e-53 214.2 391 34.3
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 2.4e-53 213.8 410 33.7
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 3.1e-53 213.4 381 33.9
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 3.1e-53 213.4 399 34.3
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 6.9e-53 212.2 401 35.4
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 2.6e-52 210.3 394 35.3
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 3.4e-52 209.9 393 33.1
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 3.8e-51 206.5 367 34.1
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 6.7e-48 195.7 381 33.6
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 2.5e-47 193.7 442 30.8
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 2.8e-46 190.3 389 33.2
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 2.2e-43 180.6 521 27.8
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 4.2e-42 176.4 312 34.3
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 1.6e-41 174.5 301 35.2
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 1.5e-39 167.9 271 38.0
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 4.8e-38 162.9 355 32.4
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 8.2e-38 162.2 319 32.6
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 3.1e-37 160.2 301 33.9
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.2e-35 154.1 302 34.8
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 5.0e-35 152.9 317 33.1
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 5.5e-34 149.4 388 29.1
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 9.3e-34 148.7 268 34.7
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 5.1e-32 142.9 263 33.8
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 5.1e-32 142.9 234 37.6
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 4.1e-29 133.3 334 29.6
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 1.0e-27 128.6 189 38.1
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.1e-26 125.2 186 38.7
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 7.2e-26 122.5 154 42.2
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 1.6e-25 121.3 148 43.2
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 1.0e-24 118.6 176 37.5
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 1.1e-23 115.2 225 32.9
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 7.7e-20 102.4 153 37.3
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 1.4e-18 98.2 115 44.3
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 7.0e-13 79.3 112 40.2
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 3.6e-09 67.0 134 32.1
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 6.7e-08 62.8 142 30.3


User provided reference genes

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