Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO06G001 Micromonas commoda HOM05D005340 ORTHO05D006693 1.2e-113 413.3 235 100.0
MCO06G120 Micromonas commoda HOM05D005340 ORTHO05D006693 9.4e-45 184.5 93 98.9
PRCOL_00002185 Prasinoderma coloniale HOM05D005340 ORTHO05D006693 3.5e-15 86.3 94 48.9
Aqoxy5G01062 Aquilegia oxysepala HOM05D005340 ORTHO05D006693 1.5e-13 80.9 98 49.0
CBR_g31513 Chara braunii HOM05D005340 ORTHO05D006693 2.5e-13 80.1 97 44.3
PGR142G3832 Punica granatum HOM05D005340 ORTHO05D006693 9.5e-13 78.2 91 48.4
Gohir.A09G212300 Gossypium hirsutum HOM05D005340 ORTHO05D006693 1.6e-12 77.4 91 46.2
Gohir.D09G205800 Gossypium hirsutum HOM05D005340 ORTHO05D006693 1.6e-12 77.4 100 43.0
Gorai.006G229700 Gossypium raimondii HOM05D005340 ORTHO05D006693 1.6e-12 77.4 100 43.0
Cre16.g690150 Chlamydomonas reinhardtii HOM05D005340 ORTHO05D006693 2.1e-12 77.0 218 28.9
SEGI_23556 Sequoiadendron giganteum HOM05D005340 ORTHO05D006693 2.1e-12 77.0 91 46.2
Thecc.04G135300 Theobroma cacao HOM05D005340 ORTHO05D006693 2.8e-12 76.6 91 47.3
FAN13G0075 Fragaria x ananassa HOM05D005340 ORTHO05D006693 3.6e-12 76.3 113 42.5
PSO782G4549 Papaver somniferum HOM05D005340 ORTHO05D006693 3.6e-12 76.3 91 47.3
RcHm_v2.0_Chr7g0224281 Rosa chinensis HOM05D005340 ORTHO05D006693 4.7e-12 75.9 100 46.0
CiPaw.05G042900 Carya illinoinensis HOM05D005340 ORTHO05D006693 6.2e-12 75.5 100 44.0
Manes.01G109700 Manihot esculenta HOM05D005340 ORTHO05D006693 6.2e-12 75.5 91 49.5
PSO541G3461 Papaver somniferum HOM05D005340 ORTHO05D006693 6.2e-12 75.5 91 47.3
Pp3c19_22340 Physcomitrium patens HOM05D005340 ORTHO05D006693 6.2e-12 75.5 90 48.9
Duzib151G0269 Durio zibethinus HOM05D005340 ORTHO05D006693 8.0e-12 75.1 91 46.2
Psat1g075120 Pisum sativum HOM05D005340 ORTHO05D006693 8.0e-12 75.1 100 43.0
FvH4_5g30090 Fragaria vesca HOM05D005340 ORTHO05D006693 1.4e-11 74.3 100 45.0
COL.COLO4_05461 Corchorus olitorius HOM05D005340 ORTHO05D006693 1.8e-11 73.9 91 47.3
FAN08G3454 Fragaria x ananassa HOM05D005340 ORTHO05D006693 1.8e-11 73.9 100 45.0
AagrBONN_evm.TU.Sc2ySwM_117.1419 Anthoceros agrestis HOM05D005340 ORTHO05D006693 2.3e-11 73.6 87 48.3
arahy.Tifrunner.gnm1.ann1.2X25WT Arachis hypogaea HOM05D005340 ORTHO05D006693 2.3e-11 73.6 91 44.0
arahy.Tifrunner.gnm1.ann1.HD0QD7 Arachis hypogaea HOM05D005340 ORTHO05D006693 2.3e-11 73.6 91 44.0
Dinv34831 Davidia involucrata HOM05D005340 ORTHO05D006693 2.3e-11 73.6 91 47.3
MD15G1418600 Malus domestica HOM05D005340 ORTHO05D006693 3.1e-11 73.2 90 46.7
Nn8g41264 Nelumbo nucifera HOM05D005340 ORTHO05D006693 3.1e-11 73.2 88 45.5
PSO675G0345 Papaver somniferum HOM05D005340 ORTHO05D006693 3.1e-11 73.2 91 46.2
FAN04G0654 Fragaria x ananassa HOM05D005340 ORTHO05D006693 4.0e-11 72.8 100 45.0
Atru.chr1.1714 Acer truncatum HOM05D005340 ORTHO05D006693 5.2e-11 72.4 91 47.3
Ah.16g101850 Amaranthus hybridus HOM05D005340 ORTHO05D006693 6.8e-11 72.0 91 45.1
CSS0006515 Camellia sinensis var. sinensis HOM05D005340 ORTHO05D006693 6.8e-11 72.0 91 46.2
Prupe.1G562700 Prunus persica HOM05D005340 ORTHO05D006693 6.8e-11 72.0 90 45.6
TWI77G0603 Tripterygium wilfordii HOM05D005340 ORTHO05D006693 6.8e-11 72.0 91 42.9
VMungo1127G2281 Vigna mungo HOM05D005340 ORTHO05D006693 6.8e-11 72.0 90 43.3
AUR62023320 Chenopodium quinoa HOM05D005340 ORTHO05D006693 8.9e-11 71.6 91 47.3
Eucgr.F02485 Eucalyptus grandis HOM05D005340 ORTHO05D006693 8.9e-11 71.6 91 45.1
Phvul.004G064500 Phaseolus vulgaris HOM05D005340 ORTHO05D006693 8.9e-11 71.6 90 44.4
Sabra04G0079500 Salix brachista HOM05D005340 ORTHO05D006693 8.9e-11 71.6 110 40.9
Sed0021828 Sechium edule HOM05D005340 ORTHO05D006693 8.9e-11 71.6 81 51.9
Actinidia17633 Actinidia chinensis HOM05D005340 ORTHO05D006693 1.2e-10 71.2 91 44.0
CiPaw.06G148800 Carya illinoinensis HOM05D005340 ORTHO05D006693 1.2e-10 71.2 101 42.6
Glyma.13G046500 Glycine max HOM05D005340 ORTHO05D006693 1.2e-10 71.2 90 43.3
Mapoly0037s0055 Marchantia polymorpha HOM05D005340 ORTHO05D006693 1.2e-10 71.2 87 43.7
Phvul.002G243400 Phaseolus vulgaris HOM05D005340 ORTHO05D006693 1.2e-10 71.2 87 44.8
QL02p098613 Quercus lobata HOM05D005340 ORTHO05D006693 1.2e-10 71.2 91 45.1
Hund16143 Selenicereus undatus HOM05D005340 ORTHO05D006693 1.5e-10 70.9 91 48.4
TWI74G0404 Tripterygium wilfordii HOM05D005340 ORTHO05D006693 1.5e-10 70.9 91 44.0
CANSAT54G1996 Cannabis sativa HOM05D005340 ORTHO05D006693 2.0e-10 70.5 91 45.1
Haze_01628 Corylus avellana HOM05D005340 ORTHO05D006693 2.0e-10 70.5 100 42.0
Potri.004G100500 Populus trichocarpa HOM05D005340 ORTHO05D006693 2.0e-10 70.5 92 44.6
TAR371G0529 Trochodendron aralioides HOM05D005340 ORTHO05D006693 2.0e-10 70.5 91 45.1
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 2.0e-10 70.5 91 45.1
EL10Ac2g04584 Beta vulgaris HOM05D005340 ORTHO05D006693 2.6e-10 70.1 91 47.3
Potri.017G114100 Populus trichocarpa HOM05D005340 ORTHO05D006693 2.6e-10 70.1 92 43.5
Sc10g0001220 Simmondsia chinensis HOM05D005340 ORTHO05D006693 2.6e-10 70.1 91 46.2
CDE11G0559 Ceratophyllum demersum HOM05D005340 ORTHO05D006693 3.4e-10 69.7 100 42.0
AUR62008983 Chenopodium quinoa HOM05D005340 ORTHO05D006693 3.4e-10 69.7 91 47.3
TPR.G32458 Trifolium pratense HOM05D005340 ORTHO05D006693 3.4e-10 69.7 88 44.3
CsaV3_3G020610 Cucumis sativus L. HOM05D005340 ORTHO05D006693 4.4e-10 69.3 81 50.6
Rhsim08G0081700 Rhododendron simsii HOM05D005340 ORTHO05D006693 4.4e-10 69.3 101 41.6
Solyc02g085860.4 Solanum lycopersicum HOM05D005340 ORTHO05D006693 4.4e-10 69.3 100 43.0
Sopen02g030540 Solanum pennellii HOM05D005340 ORTHO05D006693 4.4e-10 69.3 100 43.0
CAN.G625.8 Capsicum annuum HOM05D005340 ORTHO05D006693 5.8e-10 68.9 100 43.0
MELO3C023794.2 Cucumis melo HOM05D005340 ORTHO05D006693 7.5e-10 68.6 81 51.9
MELO3C031783.2 Cucumis melo HOM05D005340 ORTHO05D006693 7.5e-10 68.6 81 51.9
Migut.H00210 Erythranthe guttata HOM05D005340 ORTHO05D006693 7.5e-10 68.6 91 44.0
SHI22415 Sapria himalayana HOM05D005340 ORTHO05D006693 7.5e-10 68.6 90 44.4
PGSC0003DMG400012671 Solanum tuberosum HOM05D005340 ORTHO05D006693 7.5e-10 68.6 100 43.0
THA.LOC104823863 Tarenaya hassleriana HOM05D005340 ORTHO05D006693 7.5e-10 68.6 87 47.1
Cfa015491 Carpinus fangiana HOM05D005340 ORTHO05D006693 9.8e-10 68.2 90 43.3
ClCG05G011750 Citrullus lanatus HOM05D005340 ORTHO05D006693 9.8e-10 68.2 81 49.4
Lsat_1_v5_gn_4_153740 Lactuca sativa HOM05D005340 ORTHO05D006693 9.8e-10 68.2 90 42.2
Nitab4.5_0001569g0090 Nicotiana tabacum HOM05D005340 ORTHO05D006693 9.8e-10 68.2 100 42.0
Oeu030776.1 Olea europaea HOM05D005340 ORTHO05D006693 9.8e-10 68.2 100 43.0
Os07g0164500 Oryza sativa ssp. japonica HOM05D005340 ORTHO05D006693 9.8e-10 68.2 91 42.9
TAR362G0130 Trochodendron aralioides HOM05D005340 ORTHO05D006693 9.8e-10 68.2 91 44.0
ATR0618G222 Amborella trichopoda HOM05D005340 ORTHO05D006693 1.3e-09 67.8 91 45.1
DCAR_025917 Daucus carota HOM05D005340 ORTHO05D006693 1.3e-09 67.8 91 41.8
Nitab4.5_0005199g0080 Nicotiana tabacum HOM05D005340 ORTHO05D006693 1.7e-09 67.4 100 41.0
Peaxi162Scf00814g00228 Petunia axillaris HOM05D005340 ORTHO05D006693 2.2e-09 67.0 91 42.9
SalBow3G0764 Salvia bowleyana HOM05D005340 ORTHO05D006693 2.2e-09 67.0 91 44.0
Aa31LG9G17070 Aethionema arabicum HOM05D005340 ORTHO05D006693 2.9e-09 66.6 91 42.9
Lj2g0006310 Lotus japonicus HOM05D005340 ORTHO05D006693 2.9e-09 66.6 87 43.7
HanXRQChr11g0325001 Helianthus annuus HOM05D005340 ORTHO05D006693 3.7e-09 66.2 91 41.8
AT5G38460 Arabidopsis thaliana HOM05D005340 ORTHO05D006693 4.9e-09 65.9 91 41.8
Ciclev10011466m.g Citrus clementina HOM05D005340 ORTHO05D006693 4.9e-09 65.9 91 44.0
Sp7g03590 Schrenkiella parvula HOM05D005340 ORTHO05D006693 4.9e-09 65.9 91 42.9
AL7G52120 Arabidopsis lyrata HOM05D005340 ORTHO05D006693 6.4e-09 65.5 91 41.8
BcaB06g27224 Brassica carinata HOM05D005340 ORTHO05D006693 6.4e-09 65.5 91 41.8
Lalb_Chr06g0174621 Lupinus albus HOM05D005340 ORTHO05D006693 6.4e-09 65.5 90 42.2
BcaC02g09648 Brassica carinata HOM05D005340 ORTHO05D006693 8.3e-09 65.1 91 41.8
Lj2A443T58 Lonicera japonica HOM05D005340 ORTHO05D006693 8.3e-09 65.1 91 40.7
A04p11420 Brassica napus HOM05D005340 ORTHO05D006693 1.1e-08 64.7 91 41.8
C04p45110 Brassica napus HOM05D005340 ORTHO05D006693 1.1e-08 64.7 91 41.8
BolC4t26090H Brassica oleracea HOM05D005340 ORTHO05D006693 1.1e-08 64.7 91 41.8
BraA04t16805Z Brassica rapa HOM05D005340 ORTHO05D006693 1.1e-08 64.7 91 41.8
Thhalv10027717m.g Eutrema salsugineum HOM05D005340 ORTHO05D006693 1.1e-08 64.7 91 40.7
GSVIVG01031043001 Vitis vinifera HOM05D005340 ORTHO05D006693 1.1e-08 64.7 91 44.0
Carub.0007s3744 Capsella rubella HOM05D005340 ORTHO05D006693 1.4e-08 64.3 90 42.2
CARHR291850 Cardamine hirsuta HOM05D005340 ORTHO05D006693 1.4e-08 64.3 91 41.8
Zm00001eb015730 Zea mays HOM05D005340 ORTHO05D006693 1.4e-08 64.3 91 39.6
SGA_v2.0_scaffold33G13479 Striga asiatica HOM05D005340 ORTHO05D006693 1.9e-08 63.9 91 41.8
Cpa.g.c31532 Carica papaya HOM05D005340 ORTHO05D006693 3.2e-08 63.2 74 51.4
Cc07_g08850 Coffea canephora HOM05D005340 ORTHO05D006693 1.6e-07 60.8 91 39.6
SMO196G0061 Selaginella moellendorffii HOM05D005340 ORTHO05D006693 1.6e-07 60.8 87 42.5


User provided reference genes

Program Settings