Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G723 Micromonas commoda HOM05D004936 ORTHO05D005977 1.8e-78 295.8 146 100.0
SMO353G0176 Selaginella moellendorffii HOM05D004936 ORTHO05D005977 2.1e-26 122.9 144 45.1
Migut.G00331 Erythranthe guttata HOM05D004936 ORTHO05D005977 2.7e-26 122.5 145 44.1
PRCOL_00001564 Prasinoderma coloniale HOM05D004936 ORTHO05D005977 3.6e-26 122.1 146 42.5
FvH4_3g39470 Fragaria vesca HOM05D004936 ORTHO05D005977 6.1e-26 121.3 145 44.1
FAN11G2192 Fragaria x ananassa HOM05D004936 ORTHO05D005977 6.1e-26 121.3 145 44.1
FAN16G3562 Fragaria x ananassa HOM05D004936 ORTHO05D005977 6.1e-26 121.3 145 44.1
FAN21G3073 Fragaria x ananassa HOM05D004936 ORTHO05D005977 6.1e-26 121.3 145 44.1
FAN25G3861 Fragaria x ananassa HOM05D004936 ORTHO05D005977 1.4e-25 120.2 143 44.8
unitig_736.g22495 Utricularia gibba HOM05D004936 ORTHO05D005977 1.8e-25 119.8 146 44.5
Ciclev10029395m.g Citrus clementina HOM05D004936 ORTHO05D005977 3.0e-25 119.0 143 45.5
THA.LOC104812175 Tarenaya hassleriana HOM05D004936 ORTHO05D005977 3.0e-25 119.0 146 43.8
Os03g0296300 Oryza sativa ssp. japonica HOM05D004936 ORTHO05D005977 3.9e-25 118.6 148 45.3
SalBow5G1663 Salvia bowleyana HOM05D004936 ORTHO05D005977 5.1e-25 118.2 146 42.5
BcaB03g12974 Brassica carinata HOM05D004936 ORTHO05D005977 6.7e-25 117.9 145 44.8
BcaNung05441 Brassica carinata HOM05D004936 ORTHO05D005977 6.7e-25 117.9 145 44.8
Medtr2g070380 Medicago truncatula HOM05D004936 ORTHO05D005977 6.7e-25 117.9 145 43.4
Medtr4g077950 Medicago truncatula HOM05D004936 ORTHO05D005977 6.7e-25 117.9 145 43.4
BcaC07g38896 Brassica carinata HOM05D004936 ORTHO05D005977 8.8e-25 117.5 145 44.1
C08p18520 Brassica napus HOM05D004936 ORTHO05D005977 8.8e-25 117.5 145 44.1
BolC8t49484H Brassica oleracea HOM05D004936 ORTHO05D005977 8.8e-25 117.5 145 44.1
HanXRQChr14g0439861 Helianthus annuus HOM05D004936 ORTHO05D005977 8.8e-25 117.5 147 43.5
A09p59990 Brassica napus HOM05D004936 ORTHO05D005977 1.1e-24 117.1 145 44.1
BraA09t41369Z Brassica rapa HOM05D004936 ORTHO05D005977 1.1e-24 117.1 145 44.1
ECA238G2024 Erigeron canadensis HOM05D004936 ORTHO05D005977 2.0e-24 116.3 146 42.5
A08p30450 Brassica napus HOM05D004936 ORTHO05D005977 2.6e-24 115.9 145 43.4
BraA08t34977Z Brassica rapa HOM05D004936 ORTHO05D005977 2.6e-24 115.9 145 43.4
C08p43440 Brassica napus HOM05D004936 ORTHO05D005977 3.3e-24 115.5 145 43.4
BolC8t51892H Brassica oleracea HOM05D004936 ORTHO05D005977 3.3e-24 115.5 145 43.4
Zm00001eb013690 Zea mays HOM05D004936 ORTHO05D005977 5.7e-24 114.8 146 44.5
Atru.chr3.4141 Acer truncatum HOM05D004936 ORTHO05D005977 7.4e-24 114.4 148 42.6
Gohir.A12G269500 Gossypium hirsutum HOM05D004936 ORTHO05D005977 7.4e-24 114.4 145 42.8
RcHm_v2.0_Chr5g0071211 Rosa chinensis HOM05D004936 ORTHO05D005977 7.4e-24 114.4 145 41.4
BcaC07g41334 Brassica carinata HOM05D004936 ORTHO05D005977 9.7e-24 114.0 145 42.8
Cre01.g021050 Chlamydomonas reinhardtii HOM05D004936 ORTHO05D005977 9.7e-24 114.0 150 42.0
Gohir.D12G270000 Gossypium hirsutum HOM05D004936 ORTHO05D005977 9.7e-24 114.0 145 42.8
Gorai.008G290300 Gossypium raimondii HOM05D004936 ORTHO05D005977 9.7e-24 114.0 145 42.8
GSVIVG01024670001 Vitis vinifera HOM05D004936 ORTHO05D005977 9.7e-24 114.0 146 41.8
arahy.Tifrunner.gnm1.ann1.K3S5GW Arachis hypogaea HOM05D004936 ORTHO05D005977 1.3e-23 113.6 145 43.4
arahy.Tifrunner.gnm1.ann1.Z0D2FZ Arachis hypogaea HOM05D004936 ORTHO05D005977 1.3e-23 113.6 145 43.4
CSS0031896 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 1.7e-23 113.2 145 42.1
CSS0046409 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 1.7e-23 113.2 145 42.1
Hma1.2p1_0146F.1_g065480 Hydrangea macrophylla HOM05D004936 ORTHO05D005977 1.7e-23 113.2 145 42.1
Hund18959 Selenicereus undatus HOM05D004936 ORTHO05D005977 1.7e-23 113.2 144 42.4
Rhsim13G0065400 Rhododendron simsii HOM05D004936 ORTHO05D005977 2.2e-23 112.8 145 42.1
Ah.15g096180 Amaranthus hybridus HOM05D004936 ORTHO05D005977 2.8e-23 112.5 142 43.7
Aa31LG7G2800 Aethionema arabicum HOM05D004936 ORTHO05D005977 3.7e-23 112.1 146 43.2
Eucgr.K02762 Eucalyptus grandis HOM05D004936 ORTHO05D005977 8.2e-23 110.9 147 41.5
TAR636G1077 Trochodendron aralioides HOM05D004936 ORTHO05D005977 8.2e-23 110.9 146 41.8
CBR_g19040 Chara braunii HOM05D004936 ORTHO05D005977 1.4e-22 110.2 127 44.9
COL.COLO4_31393 Corchorus olitorius HOM05D004936 ORTHO05D005977 1.4e-22 110.2 145 41.4
EL10Ac7g15900 Beta vulgaris HOM05D004936 ORTHO05D005977 1.8e-22 109.8 142 43.0
AUR62001892 Chenopodium quinoa HOM05D004936 ORTHO05D005977 1.8e-22 109.8 142 42.3
AUR62009688 Chenopodium quinoa HOM05D004936 ORTHO05D005977 1.8e-22 109.8 144 41.0
CARHR018890 Cardamine hirsuta HOM05D004936 ORTHO05D005977 3.1e-22 109.0 146 42.5
Thhalv10008922m.g Eutrema salsugineum HOM05D004936 ORTHO05D005977 3.1e-22 109.0 146 40.4
Sp1g16280 Schrenkiella parvula HOM05D004936 ORTHO05D005977 3.1e-22 109.0 146 41.1
AL1G30690 Arabidopsis lyrata HOM05D004936 ORTHO05D005977 5.3e-22 108.2 146 40.4
Manes.03G100200 Manihot esculenta HOM05D004936 ORTHO05D005977 5.3e-22 108.2 143 41.3
Carub.0001s1794 Capsella rubella HOM05D004936 ORTHO05D005977 7.0e-22 107.8 146 40.4
Aqoxy1G01790 Aquilegia oxysepala HOM05D004936 ORTHO05D005977 1.2e-21 107.1 145 41.4
Mapoly0036s0081 Marchantia polymorpha HOM05D004936 ORTHO05D005977 1.5e-21 106.7 141 44.0
Potri.001G281200 Populus trichocarpa HOM05D004936 ORTHO05D005977 1.5e-21 106.7 143 42.7
CiPaw.13G071600 Carya illinoinensis HOM05D004936 ORTHO05D005977 4.5e-21 105.1 145 40.0
Duzib068G0913 Durio zibethinus HOM05D004936 ORTHO05D005977 4.5e-21 105.1 151 41.7
Manes.15G096000 Manihot esculenta HOM05D004936 ORTHO05D005977 5.9e-21 104.8 144 38.9
CANSAT54G2258 Cannabis sativa HOM05D004936 ORTHO05D005977 7.7e-21 104.4 145 40.0
Potri.009G076400 Populus trichocarpa HOM05D004936 ORTHO05D005977 7.7e-21 104.4 143 41.3
CDE06G1927 Ceratophyllum demersum HOM05D004936 ORTHO05D005977 1.0e-20 104.0 146 40.4
Actinidia23210 Actinidia chinensis HOM05D004936 ORTHO05D005977 1.7e-20 103.2 145 40.0
CiPaw.14G055600 Carya illinoinensis HOM05D004936 ORTHO05D005977 3.8e-20 102.1 143 39.9
PSO210G4578 Papaver somniferum HOM05D004936 ORTHO05D005977 3.8e-20 102.1 146 39.7
PSO832G3733 Papaver somniferum HOM05D004936 ORTHO05D005977 3.8e-20 102.1 146 39.7
TPR.G39486 Trifolium pratense HOM05D004936 ORTHO05D005977 3.8e-20 102.1 145 40.0
Psat7g170640 Pisum sativum HOM05D004936 ORTHO05D005977 5.0e-20 101.7 145 40.0
VMungo1127G0545 Vigna mungo HOM05D004936 ORTHO05D005977 6.5e-20 101.3 145 40.0
Phvul.011G019700 Phaseolus vulgaris HOM05D004936 ORTHO05D005977 1.9e-19 99.8 145 39.3
QL01p039898 Quercus lobata HOM05D004936 ORTHO05D005977 1.9e-19 99.8 148 39.9
Glyma.09G223900 Glycine max HOM05D004936 ORTHO05D005977 2.5e-19 99.4 145 39.3
Glyma.12G017200 Glycine max HOM05D004936 ORTHO05D005977 2.5e-19 99.4 145 38.6
Duzib084G0838 Durio zibethinus HOM05D004936 ORTHO05D005977 3.2e-19 99.0 145 38.6
Lsat_1_v5_gn_2_60241 Lactuca sativa HOM05D004936 ORTHO05D005977 4.2e-19 98.6 145 38.6
Pp3c12_17590 Physcomitrium patens HOM05D004936 ORTHO05D005977 4.2e-19 98.6 146 39.0
Lalb_Chr03g0024401 Lupinus albus HOM05D004936 ORTHO05D005977 7.2e-19 97.8 145 40.0
Solyc11g068980.2 Solanum lycopersicum HOM05D004936 ORTHO05D005977 7.2e-19 97.8 144 37.5
Sopen11g027690 Solanum pennellii HOM05D004936 ORTHO05D005977 7.2e-19 97.8 144 37.5
PGSC0003DMG402019636 Solanum tuberosum HOM05D004936 ORTHO05D005977 9.4e-19 97.4 144 37.5
DCAR_018221 Daucus carota HOM05D004936 ORTHO05D005977 1.2e-18 97.1 146 37.0
Peaxi162Scf00624g00914 Petunia axillaris HOM05D004936 ORTHO05D005977 1.2e-18 97.1 144 36.8
Lj3g0015200 Lotus japonicus HOM05D004936 ORTHO05D005977 1.6e-18 96.7 149 38.9
CsaV3_1G036620 Cucumis sativus L. HOM05D004936 ORTHO05D005977 2.1e-18 96.3 145 35.2
Prupe.6G051100 Prunus persica HOM05D004936 ORTHO05D005977 2.7e-18 95.9 145 36.6
Sc12g0000320 Simmondsia chinensis HOM05D004936 ORTHO05D005977 2.7e-18 95.9 117 41.9
PGR044G1703 Punica granatum HOM05D004936 ORTHO05D005977 4.7e-18 95.1 145 37.9
TWI79G0082 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 6.1e-18 94.7 143 35.7
MSTRG.4026 Avicennia marina HOM05D004936 ORTHO05D005977 1.0e-17 94.0 145 37.9
SGA_v2.0_scaffold39G15257 Striga asiatica HOM05D004936 ORTHO05D005977 1.0e-17 94.0 145 37.9
Cc05_g03440 Coffea canephora HOM05D004936 ORTHO05D005977 1.4e-17 93.6 145 37.9
vmacro02929 Vaccinium macrocarpon HOM05D004936 ORTHO05D005977 1.8e-17 93.2 133 36.8
MD11G1063700 Malus domestica HOM05D004936 ORTHO05D005977 2.3e-17 92.8 130 40.8
Lj2A1091T51 Lonicera japonica HOM05D004936 ORTHO05D005977 3.9e-17 92.0 143 37.8
Sabra16G0174900 Salix brachista HOM05D004936 ORTHO05D005977 3.9e-17 92.0 117 45.3
Sed0012478 Sechium edule HOM05D004936 ORTHO05D005977 3.9e-17 92.0 146 36.3
TWI75G1184 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 3.9e-17 92.0 143 35.0
Nitab4.5_0000158g0090 Nicotiana tabacum HOM05D004936 ORTHO05D005977 5.2e-17 91.7 144 36.1
Nitab4.5_0000570g0350 Nicotiana tabacum HOM05D004936 ORTHO05D005977 5.2e-17 91.7 144 36.1
Nitab4.5_0002493g0030 Nicotiana tabacum HOM05D004936 ORTHO05D005977 5.2e-17 91.7 144 36.1
HPP92_003695 Vanilla planifolia HOM05D004936 ORTHO05D005977 5.2e-17 91.7 148 37.8
Dinv28681 Davidia involucrata HOM05D004936 ORTHO05D005977 6.7e-17 91.3 145 36.6
COL.COLO4_04994 Corchorus olitorius HOM05D000034 ORTHO05D000037 1.1e-16 90.5 117 42.7
AagrBONN_evm.TU.Sc2ySwM_344.4538 Anthoceros agrestis HOM05D004936 ORTHO05D005977 1.5e-16 90.1 143 37.1
SEGI_35825 Sequoiadendron giganteum HOM05D004936 ORTHO05D005977 4.4e-16 88.6 108 40.7
Thecc.03G057900 Theobroma cacao HOM05D004936 ORTHO05D005977 1.7e-15 86.7 145 34.5
MELO3C020507.2 Cucumis melo HOM05D004936 ORTHO05D005977 8.2e-15 84.3 148 33.1
Cfa023961 Carpinus fangiana HOM05D004936 ORTHO05D005977 1.4e-14 83.6 149 35.6
Cpa.g.sc2.381 Carica papaya HOM05D004936 ORTHO05D005977 5.3e-14 81.6 119 41.2
Dinv09657 Davidia involucrata HOM05D004936 ORTHO05D005977 5.3e-14 81.6 76 44.7
Nn2g10980 Nelumbo nucifera HOM05D004936 ORTHO05D005977 9.1e-14 80.9 148 33.1
TPR.G26511 Trifolium pratense HOM05D004936 ORTHO05D005977 2.0e-13 79.7 98 46.9
Zm00001eb130910 Zea mays HOM05D004936 ORTHO05D005977 5.9e-13 78.2 94 40.4
Ca_18959_v3 Cicer arietinum L. HOM05D000232 ORTHO05D000145 1.0e-12 77.4 119 38.7
Zm00001eb223780 Zea mays HOM05D004936 ORTHO05D005977 1.0e-12 77.4 92 41.3
Oeu023392.2 Olea europaea HOM05D004936 ORTHO05D005977 1.7e-12 76.6 117 41.0
CANSAT21G2196 Cannabis sativa HOM05D004936 ORTHO05D005977 6.5e-12 74.7 88 43.2
DCAR_027925 Daucus carota HOM05D004936 ORTHO05D005977 6.5e-12 74.7 119 37.0
CAN.G3648.1 Capsicum annuum HOM05D004936 ORTHO05D005977 1.5e-11 73.6 117 35.9
CAN.G689.18 Capsicum annuum HOM05D004936 ORTHO05D005977 1.5e-11 73.6 117 35.9
MD03G1061000 Malus domestica HOM05D004936 ORTHO05D005977 1.5e-11 73.6 117 38.5
Haze_24392 Corylus avellana HOM05D004936 ORTHO05D005977 2.5e-11 72.8 119 36.1
Lj1A128T43 Lonicera japonica HOM05D004936 ORTHO05D005977 3.2e-11 72.4 120 37.5
ClCG03G000300 Citrullus lanatus HOM05D000089 ORTHO05D000104 5.5e-11 71.6 130 34.6
Cfa011755 Carpinus fangiana HOM05D000089 ORTHO05D000104 9.4e-11 70.9 116 36.2
ATR0691G226 Amborella trichopoda HOM05D004936 ORTHO05D005977 1.6e-10 70.1 135 37.0
Nitab4.5_0003484g0120 Nicotiana tabacum HOM05D004936 ORTHO05D005977 3.6e-10 68.9 117 35.9
Oeu011630.1 Olea europaea HOM05D004936 ORTHO05D005977 3.6e-10 68.9 119 35.3
MD11G1064200 Malus domestica HOM05D004936 ORTHO05D005977 2.3e-09 66.2 62 43.5
Nn5g31489 Nelumbo nucifera HOM05D004936 ORTHO05D005977 6.3e-07 58.2 122 32.0
Nn6g34585 Nelumbo nucifera HOM05D004936 ORTHO05D005977 6.3e-07 58.2 122 32.0
AT3G10110 Arabidopsis thaliana HOM05D004936 ORTHO05D005977 1.1e-06 57.4 95 35.8


User provided reference genes

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