Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 1.1e-69 266.5 137 100.0
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 3.1e-24 115.5 80 63.8
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 1.2e-23 113.6 82 64.6
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 1.3e-22 110.2 81 58.0
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 3.8e-22 108.6 84 56.0
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 9.4e-21 104.0 83 55.4
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 8.0e-20 100.9 80 55.0
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 8.0e-20 100.9 80 55.0
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 8.0e-20 100.9 106 46.2
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 1.0e-19 100.5 80 58.8
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 1.0e-19 100.5 82 48.8
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 2.3e-19 99.4 95 48.4
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 3.0e-19 99.0 96 50.0
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 3.0e-19 99.0 83 54.2
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 3.0e-19 99.0 80 53.8
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 4.0e-19 98.6 83 54.2
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 5.2e-19 98.2 89 52.8
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 1.2e-18 97.1 83 55.4
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 1.2e-18 97.1 83 55.4
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 1.5e-18 96.7 93 52.7
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 1.5e-18 96.7 83 53.0
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 2.0e-18 96.3 83 55.4
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 2.0e-18 96.3 80 55.0
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 2.0e-18 96.3 81 54.3
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 2.6e-18 95.9 80 51.2
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 2.6e-18 95.9 90 53.3
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 3.4e-18 95.5 80 53.8
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 4.4e-18 95.1 80 53.8
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 4.4e-18 95.1 84 52.4
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 4.4e-18 95.1 79 54.4
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 4.4e-18 95.1 80 51.2
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 5.7e-18 94.7 80 55.0
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 5.7e-18 94.7 83 54.2
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 5.7e-18 94.7 84 53.6
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 5.7e-18 94.7 80 53.8
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 5.7e-18 94.7 83 53.0
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 5.7e-18 94.7 80 55.0
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 5.7e-18 94.7 86 53.5
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 5.7e-18 94.7 90 52.2
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 7.5e-18 94.4 79 55.7
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 7.5e-18 94.4 80 53.8
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 7.5e-18 94.4 80 55.0
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 7.5e-18 94.4 80 53.8
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 7.5e-18 94.4 80 53.8
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 7.5e-18 94.4 83 51.8
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 7.5e-18 94.4 83 51.8
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 7.5e-18 94.4 80 51.2
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 7.5e-18 94.4 98 49.0
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 9.7e-18 94.0 79 55.7
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 9.7e-18 94.0 80 53.8
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 9.7e-18 94.0 80 55.0
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 9.7e-18 94.0 80 53.8
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 9.7e-18 94.0 80 53.8
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 9.7e-18 94.0 80 55.0
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 9.7e-18 94.0 80 53.8
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 1.3e-17 93.6 79 55.7
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 1.3e-17 93.6 108 47.2
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 1.3e-17 93.6 80 55.0
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 1.3e-17 93.6 80 55.0
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.3e-17 93.6 80 53.8
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 1.7e-17 93.2 79 55.7
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 1.7e-17 93.2 79 55.7
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 1.7e-17 93.2 79 55.7
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 1.7e-17 93.2 79 55.7
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 1.7e-17 93.2 79 55.7
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 1.7e-17 93.2 80 53.8
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 1.7e-17 93.2 80 53.8
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 1.7e-17 93.2 83 51.8
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 1.7e-17 93.2 83 50.6
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 1.7e-17 93.2 95 49.5
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 2.2e-17 92.8 80 53.8
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 2.2e-17 92.8 80 52.5
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 2.2e-17 92.8 80 52.5
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 2.2e-17 92.8 95 49.5
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 2.2e-17 92.8 83 50.6
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 2.2e-17 92.8 80 53.8
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 2.2e-17 92.8 80 52.5
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 2.8e-17 92.4 85 49.4
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 2.8e-17 92.4 80 51.2
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 2.8e-17 92.4 80 52.5
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 2.8e-17 92.4 80 52.5
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 2.8e-17 92.4 80 53.8
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 2.8e-17 92.4 80 52.5
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 3.7e-17 92.0 83 50.6
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 3.7e-17 92.0 80 52.5
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 3.7e-17 92.0 80 55.0
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 3.7e-17 92.0 80 52.5
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 3.7e-17 92.0 80 53.8
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 3.7e-17 92.0 80 52.5
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 3.7e-17 92.0 83 50.6
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 3.7e-17 92.0 83 53.0
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 4.8e-17 91.7 74 58.1
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 4.8e-17 91.7 80 52.5
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 4.8e-17 91.7 80 52.5
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 4.8e-17 91.7 80 52.5
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 4.8e-17 91.7 80 52.5
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 4.8e-17 91.7 80 52.5
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 6.3e-17 91.3 77 54.5
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 6.3e-17 91.3 80 52.5
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 8.3e-17 90.9 79 54.4
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 8.3e-17 90.9 80 53.8
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 8.3e-17 90.9 77 55.8
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 8.3e-17 90.9 77 55.8
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 8.3e-17 90.9 84 48.8
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 8.3e-17 90.9 80 53.8
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 1.1e-16 90.5 80 51.2
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 1.1e-16 90.5 77 53.2
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 1.1e-16 90.5 80 51.2
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 1.1e-16 90.5 80 52.5
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 1.1e-16 90.5 79 53.2
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 1.1e-16 90.5 80 51.2
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.4e-16 90.1 80 51.2
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 1.4e-16 90.1 80 50.0
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 1.4e-16 90.1 80 50.0
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 1.4e-16 90.1 80 52.5
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 1.8e-16 89.7 79 51.9
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 3.1e-16 89.0 80 51.2
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 3.1e-16 89.0 80 51.2
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 3.1e-16 89.0 80 50.0
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 3.1e-16 89.0 92 45.7
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 4.1e-16 88.6 92 46.7
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 7.0e-16 87.8 80 51.2
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 9.1e-16 87.4 80 48.8
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.6e-15 86.7 83 47.0
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.6e-15 86.7 80 48.8
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.7e-15 85.9 80 48.8
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 3.5e-15 85.5 69 58.0
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 2.5e-13 79.3 68 50.0
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 4.2e-13 78.6 67 53.7
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 5.5e-13 78.2 67 52.2
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 7.2e-13 77.8 69 50.7
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 4.7e-12 75.1 113 38.1
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 1.8e-11 73.2 68 48.5
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 1.5e-10 70.1 67 46.3
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 9.8e-10 67.4 106 40.6
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 1.3e-09 67.0 117 40.2
Pp3c2_26700 Physcomitrium patens HOM05D005519 ORTHO05D006423 1.3e-06 57.0 48 47.9


User provided reference genes

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