Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 0.0e+00 2144.8 1245 100.0
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 2.6e-24 119.0 679 24.6
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 9.8e-24 117.1 440 26.8
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 1.7e-23 116.3 632 26.9
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 2.8e-23 115.5 508 25.8
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 4.8e-23 114.8 405 27.4
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.8e-22 112.8 508 25.4
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 2.4e-22 112.5 418 27.8
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 3.1e-22 112.1 647 25.8
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 2.0e-21 109.4 645 24.0
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 4.5e-21 108.2 658 24.3
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 4.5e-21 108.2 645 24.0
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 5.9e-21 107.8 645 24.3
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 5.9e-21 107.8 435 25.7
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 5.9e-21 107.8 660 25.6
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 3.8e-20 105.1 492 24.6
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 6.6e-20 104.4 387 26.1
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 6.6e-20 104.4 457 25.2
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 1.1e-19 103.6 642 24.6
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.5e-19 102.4 648 25.2
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 3.3e-19 102.1 441 26.3
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 4.2e-19 101.7 406 28.8
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 5.5e-19 101.3 423 27.0
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 7.2e-19 100.9 535 24.5
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 1.2e-18 100.1 644 26.4
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 1.2e-18 100.1 608 24.7
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 1.6e-18 99.8 646 25.5
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 2.8e-18 99.0 705 25.1
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 2.8e-18 99.0 608 25.8
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 2.8e-18 99.0 646 25.5
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 4.7e-18 98.2 673 25.6
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 6.1e-18 97.8 676 25.0
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 6.1e-18 97.8 625 26.2
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 8.0e-18 97.4 662 25.2
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 1.0e-17 97.1 445 24.9
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 1.0e-17 97.1 417 27.1
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 1.0e-17 97.1 401 27.2
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 1.4e-17 96.7 644 23.8
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 1.4e-17 96.7 659 26.3
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 1.4e-17 96.7 659 26.3
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 1.4e-17 96.7 372 28.5
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 1.8e-17 96.3 650 25.2
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 2.3e-17 95.9 652 24.1
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 2.3e-17 95.9 653 25.3
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 3.0e-17 95.5 601 25.0
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 5.2e-17 94.7 659 25.5
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 5.2e-17 94.7 683 25.0
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 8.9e-17 94.0 655 25.8
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 1.2e-16 93.6 451 26.2
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.5e-16 93.2 643 24.1
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 1.5e-16 93.2 645 24.8
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 2.0e-16 92.8 635 24.7
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 2.0e-16 92.8 644 26.2
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 2.6e-16 92.4 676 22.5
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 2.6e-16 92.4 633 25.0
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 3.4e-16 92.0 433 24.9
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 4.4e-16 91.7 605 25.6
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 5.7e-16 91.3 489 26.6
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 7.5e-16 90.9 510 25.3
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 9.8e-16 90.5 644 24.7
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 9.8e-16 90.5 653 25.0
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 2.2e-15 89.4 635 24.3
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 3.7e-15 88.6 648 25.8
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 8.3e-15 87.4 651 24.6
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 8.3e-15 87.4 685 25.3
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 1.8e-14 86.3 635 25.2
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 1.8e-14 86.3 553 26.2
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 5.4e-14 84.7 405 24.9
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 9.2e-14 84.0 366 26.2
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 9.2e-14 84.0 431 23.4
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.0e-13 82.8 150 34.0
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 2.7e-13 82.4 607 24.4
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 2.7e-13 82.4 625 23.7
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 3.5e-13 82.0 633 24.5
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 4.5e-13 81.6 186 34.4
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 3.9e-12 78.6 393 26.2
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 3.9e-12 78.6 647 24.1
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 5.0e-12 78.2 683 25.3
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 6.6e-12 77.8 585 23.1
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 1.5e-11 76.6 708 24.0
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 1.5e-11 76.6 706 22.5
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 1.5e-11 76.6 640 24.2
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 1.9e-11 76.3 536 22.9
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 3.3e-11 75.5 615 25.4
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 1.2e-10 73.6 150 34.0
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 1.6e-10 73.2 150 34.0
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 1.6e-10 73.2 150 34.0
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 1.6e-10 73.2 150 34.0
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 1.6e-10 73.2 150 34.0
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 2.1e-10 72.8 602 22.9
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 2.8e-10 72.4 150 34.0
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 6.1e-10 71.2 150 32.7
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 8.0e-10 70.9 628 24.2
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 1.0e-09 70.5 154 33.1
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.4e-09 70.1 320 23.8
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 1.8e-09 69.7 572 22.7
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 4.0e-09 68.6 613 24.5
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 8.9e-09 67.4 378 22.2
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 2.0e-08 66.2 151 31.8
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 2.0e-08 66.2 626 22.5
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 2.6e-08 65.9 630 24.4
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 2.6e-08 65.9 334 22.2
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 1.4e-06 60.1 632 24.5
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.2e-06 58.9 645 23.1
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 7.0e-06 57.8 385 24.9
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 7.0e-06 57.8 656 23.6


User provided reference genes

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