Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G657 Micromonas commoda HOM05D004386 ORTHO05D005247 0.0e+00 1477.2 727 100.0
CBR_g29535 Chara braunii HOM05D004386 ORTHO05D005247 4.8e-63 246.9 501 34.5
Mapoly0154s0005 Marchantia polymorpha HOM05D004386 ORTHO05D005247 2.8e-55 221.1 490 31.0
Pp3c15_21840 Physcomitrium patens HOM05D004386 ORTHO05D005247 1.5e-53 215.3 461 32.8
SEGI_08021 Sequoiadendron giganteum HOM05D004386 ORTHO05D005247 2.9e-52 211.1 642 28.0
PSO832G3302 Papaver somniferum HOM05D004386 ORTHO05D005247 3.8e-52 210.7 479 30.3
PRCOL_00001418 Prasinoderma coloniale HOM05D004386 ORTHO05D005247 3.2e-51 207.6 613 31.6
MBI16_g23842_MAGBIO Magnolia biondii HOM05D004386 ORTHO05D005247 4.2e-51 207.2 466 29.2
ATR0585G118 Amborella trichopoda HOM05D004386 ORTHO05D005247 7.2e-51 206.5 475 29.1
PSO063G4583 Papaver somniferum HOM05D004386 ORTHO05D005247 3.5e-50 204.1 479 30.1
TAR374G1586 Trochodendron aralioides HOM05D004386 ORTHO05D005247 2.3e-49 201.4 499 29.5
Aqoxy5G03803 Aquilegia oxysepala HOM05D004386 ORTHO05D005247 6.7e-49 199.9 483 29.6
Nn4g22656 Nelumbo nucifera HOM05D004386 ORTHO05D005247 7.4e-48 196.4 540 29.1
AagrBONN_evm.TU.Sc2ySwM_117.1179 Anthoceros agrestis HOM05D004386 ORTHO05D005247 1.6e-47 195.3 419 32.7
Dinv33445 Davidia involucrata HOM05D004386 ORTHO05D005247 1.6e-47 195.3 452 29.0
Nitab4.5_0007892g0010 Nicotiana tabacum HOM05D004386 ORTHO05D005247 2.2e-47 194.9 503 29.2
CiPaw.03G043200 Carya illinoinensis HOM05D004386 ORTHO05D005247 2.8e-47 194.5 479 29.4
Zm00001eb053910 Zea mays HOM05D004386 ORTHO05D005247 6.3e-47 193.4 515 28.3
SalBow1G5144 Salvia bowleyana HOM05D004386 ORTHO05D005247 2.4e-46 191.4 440 29.3
Solyc02g086470.3 Solanum lycopersicum HOM05D004386 ORTHO05D005247 2.4e-46 191.4 496 28.4
Thecc.04G016500 Theobroma cacao HOM05D004386 ORTHO05D005247 5.3e-46 190.3 479 27.3
Prupe.3G291000 Prunus persica HOM05D004386 ORTHO05D005247 6.9e-46 189.9 489 28.6
Actinidia06000 Actinidia chinensis HOM05D004386 ORTHO05D005247 1.2e-45 189.1 452 29.0
QL02p074814 Quercus lobata HOM05D004386 ORTHO05D005247 1.2e-45 189.1 484 27.5
Sopen02g031190 Solanum pennellii HOM05D004386 ORTHO05D005247 1.2e-45 189.1 496 28.2
Cfa007374 Carpinus fangiana HOM05D004386 ORTHO05D005247 2.6e-45 188.0 474 29.1
TWI12G1386 Tripterygium wilfordii HOM05D004386 ORTHO05D005247 4.5e-45 187.2 485 29.5
Haze_14735 Corylus avellana HOM05D004386 ORTHO05D005247 1.7e-44 185.3 479 28.6
Lj7A599T80 Lonicera japonica HOM05D004386 ORTHO05D005247 1.7e-44 185.3 482 28.4
Potri.001G345400 Populus trichocarpa HOM05D004386 ORTHO05D005247 1.7e-44 185.3 486 27.4
Ciclev10014954m.g Citrus clementina HOM05D004386 ORTHO05D005247 5.0e-44 183.7 491 26.9
Atru.chr6.2286 Acer truncatum HOM05D004386 ORTHO05D005247 8.5e-44 183.0 480 27.1
Carub.0005s0608 Capsella rubella HOM05D004386 ORTHO05D005247 8.5e-44 183.0 446 28.5
PGSC0003DMG400012630 Solanum tuberosum HOM05D004386 ORTHO05D005247 8.5e-44 183.0 478 28.9
Duzib147G0401 Durio zibethinus HOM05D004386 ORTHO05D005247 1.1e-43 182.6 487 27.3
HPP92_006408 Vanilla planifolia HOM05D004386 ORTHO05D005247 1.4e-43 182.2 441 29.7
AT3G27640 Arabidopsis thaliana HOM05D004386 ORTHO05D005247 1.9e-43 181.8 459 27.7
Zm00001eb216890 Zea mays HOM05D004386 ORTHO05D005247 2.5e-43 181.4 563 27.4
Migut.H00080 Erythranthe guttata HOM05D004386 ORTHO05D005247 5.5e-43 180.3 440 28.2
Manes.17G112600 Manihot esculenta HOM05D004386 ORTHO05D005247 7.2e-43 179.9 496 26.2
GSVIVG01032413001 Vitis vinifera HOM05D004386 ORTHO05D005247 7.2e-43 179.9 485 26.8
Eucgr.J02238 Eucalyptus grandis HOM05D004386 ORTHO05D005247 1.2e-42 179.1 482 28.8
Lsat_1_v5_gn_0_39820 Lactuca sativa HOM05D004386 ORTHO05D005247 1.2e-42 179.1 452 27.4
Nitab4.5_0006802g0040 Nicotiana tabacum HOM05D004386 ORTHO05D005247 2.7e-42 177.9 503 29.8
Sp2g16770 Schrenkiella parvula HOM05D004386 ORTHO05D005247 2.7e-42 177.9 465 27.1
Glyma.19G005200 Glycine max HOM05D004386 ORTHO05D005247 4.6e-42 177.2 479 27.3
DCAR_021718 Daucus carota HOM05D004386 ORTHO05D005247 6.1e-42 176.8 452 27.0
AL5G17060 Arabidopsis lyrata HOM05D004386 ORTHO05D005247 7.9e-42 176.4 458 27.3
Manes.15G150000 Manihot esculenta HOM05D004386 ORTHO05D005247 7.9e-42 176.4 503 27.4
Thhalv10004025m.g Eutrema salsugineum HOM05D004386 ORTHO05D005247 1.0e-41 176.0 530 25.7
A06p41010 Brassica napus HOM05D004386 ORTHO05D005247 1.4e-41 175.6 453 27.2
BraA06t27020Z Brassica rapa HOM05D004386 ORTHO05D005247 1.4e-41 175.6 453 27.2
Cc07_g01760 Coffea canephora HOM05D004386 ORTHO05D005247 1.4e-41 175.6 458 28.2
MD09G1027800 Malus domestica HOM05D004386 ORTHO05D005247 1.4e-41 175.6 489 27.0
Nitab4.5_0002682g0120 Nicotiana tabacum HOM05D004386 ORTHO05D005247 1.4e-41 175.6 512 28.9
RcHm_v2.0_Chr2g0172901 Rosa chinensis HOM05D004386 ORTHO05D005247 1.4e-41 175.6 480 27.7
Cpa.g.sc108.64 Carica papaya HOM05D004386 ORTHO05D005247 1.8e-41 175.3 491 28.3
CARHR149060 Cardamine hirsuta HOM05D004386 ORTHO05D005247 2.3e-41 174.9 469 28.4
FAN05G0117 Fragaria x ananassa HOM05D004386 ORTHO05D005247 2.3e-41 174.9 527 26.0
TPR.G14088 Trifolium pratense HOM05D004386 ORTHO05D005247 2.3e-41 174.9 484 28.1
vmacro05857 Vaccinium macrocarpon HOM05D004386 ORTHO05D005247 2.3e-41 174.9 487 27.5
BcaC06g30967 Brassica carinata HOM05D004386 ORTHO05D005247 3.0e-41 174.5 453 26.9
DCAR_001447 Daucus carota HOM05D004386 ORTHO05D005247 3.9e-41 174.1 442 28.5
Gorai.007G075500 Gossypium raimondii HOM05D004386 ORTHO05D005247 6.7e-41 173.3 433 27.3
HanXRQChr17g0548511 Helianthus annuus HOM05D004386 ORTHO05D005247 6.7e-41 173.3 447 27.5
Phvul.007G112800 Phaseolus vulgaris HOM05D004386 ORTHO05D005247 8.8e-41 172.9 479 27.3
FAN09G3114 Fragaria x ananassa HOM05D004386 ORTHO05D005247 1.1e-40 172.6 479 26.9
THA.LOC104805372 Tarenaya hassleriana HOM05D004386 ORTHO05D005247 1.1e-40 172.6 447 26.8
FAN02G3912 Fragaria x ananassa HOM05D004386 ORTHO05D005247 1.5e-40 172.2 516 26.2
Gohir.A07G222800 Gossypium hirsutum HOM05D004386 ORTHO05D005247 1.5e-40 172.2 482 25.5
Gohir.D11G070400 Gossypium hirsutum HOM05D004386 ORTHO05D005247 1.5e-40 172.2 433 27.0
Sabra16G0224400 Salix brachista HOM05D004386 ORTHO05D005247 1.5e-40 172.2 455 27.3
Aa31LG2G5030 Aethionema arabicum HOM05D004386 ORTHO05D005247 2.0e-40 171.8 470 26.4
C07p36830 Brassica napus HOM05D004386 ORTHO05D005247 2.0e-40 171.8 516 26.2
BolC7t44196H Brassica oleracea HOM05D004386 ORTHO05D005247 2.0e-40 171.8 516 26.2
FAN14G1865 Fragaria x ananassa HOM05D004386 ORTHO05D005247 2.0e-40 171.8 516 26.2
BcaC06g33792 Brassica carinata HOM05D004386 ORTHO05D005247 2.5e-40 171.4 516 26.2
BraA09t35984Z Brassica rapa HOM05D004386 ORTHO05D005247 2.5e-40 171.4 453 26.7
Peaxi162Scf00129g01540 Petunia axillaris HOM05D004386 ORTHO05D005247 2.5e-40 171.4 432 30.3
Hund23207 Selenicereus undatus HOM05D004386 ORTHO05D005247 2.5e-40 171.4 558 26.9
A09p03460 Brassica napus HOM05D004386 ORTHO05D005247 7.4e-40 169.9 453 26.7
Hma1.2p1_1291F.1_g273490 Hydrangea macrophylla HOM05D004386 ORTHO05D005247 7.4e-40 169.9 456 26.8
CANSAT64G0389 Cannabis sativa HOM05D004386 ORTHO05D005247 9.7e-40 169.5 478 27.0
CSS0006108 Camellia sinensis var. sinensis HOM05D004386 ORTHO05D005247 1.3e-39 169.1 453 26.7
Ca_04168_v3 Cicer arietinum L. HOM05D004386 ORTHO05D005247 1.3e-39 169.1 485 26.4
FvH4_6g51280 Fragaria vesca HOM05D004386 ORTHO05D005247 1.3e-39 169.1 516 25.8
Glyma.05G004600 Glycine max HOM05D004386 ORTHO05D005247 1.7e-39 168.7 480 26.9
Gorai.001G264600 Gossypium raimondii HOM05D004386 ORTHO05D005247 2.2e-39 168.3 518 25.3
AUR62015863 Chenopodium quinoa HOM05D004386 ORTHO05D005247 3.7e-39 167.5 492 26.8
MD17G1027700 Malus domestica HOM05D004386 ORTHO05D005247 6.3e-39 166.8 480 27.1
AUR62020360 Chenopodium quinoa HOM05D004386 ORTHO05D005247 8.2e-39 166.4 438 27.4
CsaV3_3G042780 Cucumis sativus L. HOM05D004386 ORTHO05D005247 3.1e-38 164.5 447 26.8
Phvul.004G010500 Phaseolus vulgaris HOM05D004386 ORTHO05D005247 3.1e-38 164.5 481 27.4
Psat1g054840 Pisum sativum HOM05D004386 ORTHO05D005247 5.3e-38 163.7 479 26.1
Sc11g0004050 Simmondsia chinensis HOM05D004386 ORTHO05D005247 6.9e-38 163.3 451 27.1
ClCG10G013910 Citrullus lanatus HOM05D004386 ORTHO05D005247 2.0e-37 161.8 415 27.7
Sed0019384 Sechium edule HOM05D004386 ORTHO05D005247 2.0e-37 161.8 447 27.5
EL10Ac4g07711 Beta vulgaris HOM05D004386 ORTHO05D005247 3.4e-37 161.0 443 27.1
Sed0006302 Sechium edule HOM05D004386 ORTHO05D005247 4.5e-37 160.6 494 25.7
CSS0036222 Camellia sinensis var. sinensis HOM05D004386 ORTHO05D005247 5.9e-37 160.2 453 26.3
MELO3C026578.2 Cucumis melo HOM05D004386 ORTHO05D005247 3.8e-36 157.5 448 25.9
Lj2g0022197 Lotus japonicus HOM05D004386 ORTHO05D005247 5.0e-36 157.1 484 26.0
Lalb_Chr06g0175761 Lupinus albus HOM05D004386 ORTHO05D005247 5.0e-36 157.1 437 26.3
COL.COLO4_29103 Corchorus olitorius HOM05D004386 ORTHO05D005247 2.5e-35 154.8 423 27.9
Nitab4.5_0005022g0020 Nicotiana tabacum HOM05D004386 ORTHO05D005247 1.2e-34 152.5 503 27.2
HanXRQChr15g0475331 Helianthus annuus HOM05D004386 ORTHO05D005247 2.7e-34 151.4 410 26.8
Medtr6g005220 Medicago truncatula HOM05D004386 ORTHO05D005247 3.6e-34 151.0 460 25.9
PGR083G0256 Punica granatum HOM05D004386 ORTHO05D005247 1.5e-32 145.6 476 25.0
Gohir.D07G229500 Gossypium hirsutum HOM05D004386 ORTHO05D005247 7.4e-32 143.3 433 24.5
VMungo0464G0678 Vigna mungo HOM05D004386 ORTHO05D005247 4.8e-31 140.6 414 27.1
Oeu057061.2 Olea europaea HOM05D004386 ORTHO05D005247 9.4e-27 126.3 382 26.4
Cre01.g036100 Chlamydomonas reinhardtii HOM05D004386 ORTHO05D005247 1.8e-25 122.1 524 27.9
unitig_60.g25509 Utricularia gibba HOM05D004386 ORTHO05D005247 4.8e-23 114.0 435 24.6
Gohir.A11G066200 Gossypium hirsutum HOM05D004386 ORTHO05D005247 1.6e-21 109.0 221 31.2
MSTRG.24035 Avicennia marina HOM05D004386 ORTHO05D005247 7.7e-21 106.7 217 30.9
Rhsim10G0017900 Rhododendron simsii HOM05D004386 ORTHO05D005247 5.0e-20 104.0 207 31.9
BcaC06g30968 Brassica carinata HOM05D004386 ORTHO05D005247 1.5e-19 102.4 151 34.4
MD17G1028200 Malus domestica HOM05D004386 ORTHO05D005247 4.0e-17 94.4 210 29.5
SGA_v2.0_scaffold481G52308 Striga asiatica HOM05D004386 ORTHO05D005247 5.2e-17 94.0 174 31.0
arahy.Tifrunner.gnm1.ann1.86LGQR Arachis hypogaea HOM05D004386 ORTHO05D005247 1.7e-15 89.0 190 28.9
arahy.Tifrunner.gnm1.ann1.5LAL7M Arachis hypogaea HOM05D004386 ORTHO05D005247 2.2e-15 88.6 190 28.9
Os03g0699100 Oryza sativa ssp. japonica HOM05D004386 ORTHO05D005247 3.7e-15 87.8 115 37.4
CDE07G1779 Ceratophyllum demersum HOM05D004386 ORTHO05D005247 2.4e-14 85.1 103 37.9
Ca_04167_v3 Cicer arietinum L. HOM05D004386 ORTHO05D005247 2.9e-12 78.2 173 28.9
CDE06G2157 Ceratophyllum demersum HOM05D004386 ORTHO05D005247 1.1e-11 76.3 207 30.0
Cfa023913 Carpinus fangiana HOM05D004386 ORTHO05D121680 4.2e-11 74.3 483 26.3
Actinidia36112 Actinidia chinensis HOM05D004386 ORTHO05D005247 7.2e-11 73.6 106 33.0
Prupe.3G290400 Prunus persica HOM05D004386 ORTHO05D005247 9.4e-11 73.2 92 37.0
CARHR277570 Cardamine hirsuta HOM05D001610 ORTHO05D001585 4.7e-10 70.9 118 33.9
BcaC04g23897 Brassica carinata HOM05D004386 ORTHO05D005247 1.8e-09 68.9 76 36.8
Carub.0008s2443 Capsella rubella HOM05D001610 ORTHO05D001585 4.0e-09 67.8 82 41.5
GSVIVG01034348001 Vitis vinifera HOM05D001610 ORTHO05D001585 6.8e-09 67.0 89 42.7
BraA06t25977Z Brassica rapa HOM05D001610 ORTHO05D001585 1.2e-08 66.2 216 28.2
Medtr6g005920 Medicago truncatula HOM05D004386 ORTHO05D005247 1.5e-08 65.9 195 26.7
HanXRQChr15g0474771 Helianthus annuus HOM05D004386 ORTHO05D005247 2.6e-08 65.1 94 35.1
A06p30280 Brassica napus HOM05D001610 ORTHO05D001585 3.4e-08 64.7 216 28.2
Sp2g26750 Schrenkiella parvula HOM05D001610 ORTHO05D001585 4.4e-08 64.3 83 38.6
BcaC01g02634 Brassica carinata HOM05D001610 ORTHO05D001585 9.8e-08 63.2 208 28.4
C03p62780 Brassica napus HOM05D001610 ORTHO05D001585 9.8e-08 63.2 208 28.4
BolC3t18532H Brassica oleracea HOM05D001610 ORTHO05D001585 9.8e-08 63.2 208 28.4
CARHR277550 Cardamine hirsuta HOM05D001610 ORTHO05D001585 9.8e-08 63.2 100 34.0
AL8G40810 Arabidopsis lyrata HOM05D001610 ORTHO05D001585 1.7e-07 62.4 81 40.7
TPR.G6018 Trifolium pratense HOM05D004386 ORTHO05D005247 1.7e-07 62.4 215 26.0
CARHR277560 Cardamine hirsuta HOM05D001610 ORTHO05D001585 2.2e-07 62.0 66 45.5
CARHR262570 Cardamine hirsuta HOM05D001610 ORTHO05D001585 3.7e-07 61.2 93 38.7
Ca_11629_v3 Cicer arietinum L. HOM05D004386 ORTHO05D005247 4.9e-07 60.8 159 28.3
Ca_30239_v3 Cicer arietinum L. HOM05D004386 ORTHO05D005247 4.9e-07 60.8 159 28.3
SHI06205 Sapria himalayana HOM05D005323 ORTHO05D000023 1.8e-06 58.9 198 30.8
Eucgr.L00010 Eucalyptus grandis HOM05D005323 ORTHO05D006820 2.4e-06 58.5 216 29.6
QL01p000253 Quercus lobata HOM05D001610 ORTHO05D001585 2.4e-06 58.5 87 39.1
FvH4_3g08980 Fragaria vesca HOM05D000836 ORTHO05D000709 4.1e-06 57.8 70 35.7
Gohir.A12G011100 Gossypium hirsutum HOM05D001610 ORTHO05D001585 4.1e-06 57.8 90 35.6
Gorai.008G011600 Gossypium raimondii HOM05D001610 ORTHO05D001585 4.1e-06 57.8 90 35.6
Aa31LG5G3360 Aethionema arabicum HOM05D001610 ORTHO05D001585 5.4e-06 57.4 103 32.0
HanXRQChr15g0474741 Helianthus annuus HOM05D004386 ORTHO05D005247 5.4e-06 57.4 43 53.5
Oeu054620.1 Olea europaea HOM05D004386 ORTHO05D005247 5.4e-06 57.4 51 45.1
COL.COLO4_33153 Corchorus olitorius HOM05D001610 ORTHO05D001585 7.0e-06 57.0 89 37.1
FAN16G1410 Fragaria x ananassa HOM05D000836 ORTHO05D000709 7.0e-06 57.0 70 35.7
Thecc.02G151800 Theobroma cacao HOM05D001610 ORTHO05D001585 7.0e-06 57.0 91 36.3
CANSAT78G2171 Cannabis sativa HOM05D001610 ORTHO05D001585 9.2e-06 56.6 111 34.2
Ca_09709_v3 Cicer arietinum L. HOM05D000347 ORTHO05D001997 9.2e-06 56.6 228 23.7
ECA247G1163 Erigeron canadensis HOM05D001610 ORTHO05D001585 9.2e-06 56.6 104 32.7
Lj1g0017737 Lotus japonicus HOM05D005323 ORTHO05D006820 9.2e-06 56.6 216 30.6


User provided reference genes

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