Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 5.0e-129 464.5 249 100.0
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 6.1e-10 68.9 120 35.0
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-09 66.6 129 34.9
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 8.8e-09 65.1 86 40.7
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 8.8e-09 65.1 86 40.7
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 8.8e-09 65.1 86 40.7
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 8.8e-09 65.1 86 40.7
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 4.4e-08 62.8 101 35.6
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 5.7e-08 62.4 86 39.5
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 5.7e-08 62.4 86 39.5
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 5.7e-08 62.4 86 37.2
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 7.5e-08 62.0 176 31.2
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 7.5e-08 62.0 176 31.2
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 7.5e-08 62.0 86 37.2
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 9.7e-08 61.6 86 37.2
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 9.7e-08 61.6 86 39.5
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.3e-07 61.2 86 37.2
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 1.7e-07 60.8 105 33.3
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 1.7e-07 60.8 105 34.3
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.7e-07 60.8 86 37.2
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.7e-07 60.8 86 36.0
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 1.7e-07 60.8 86 38.4
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 2.2e-07 60.5 105 35.2
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 2.2e-07 60.5 105 35.2
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 2.2e-07 60.5 105 35.2
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 2.2e-07 60.5 105 35.2
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 2.2e-07 60.5 86 37.2
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 2.2e-07 60.5 192 29.7
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 2.2e-07 60.5 86 37.2
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 2.2e-07 60.5 105 34.3
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 2.2e-07 60.5 86 36.0
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 2.8e-07 60.1 86 38.4
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.8e-07 60.1 105 34.3
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 2.8e-07 60.1 105 34.3
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 2.8e-07 60.1 86 36.0
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.8e-07 60.1 86 34.9
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 2.8e-07 60.1 86 34.9
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 3.7e-07 59.7 85 36.5
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 3.7e-07 59.7 86 34.9
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 3.7e-07 59.7 86 37.2
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 3.7e-07 59.7 86 37.2
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 3.7e-07 59.7 86 34.9
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 3.7e-07 59.7 85 37.6
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 4.8e-07 59.3 86 34.9
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 4.8e-07 59.3 86 36.0
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 4.8e-07 59.3 105 32.4
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 4.8e-07 59.3 105 32.4
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.8e-07 59.3 86 36.0
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.8e-07 59.3 86 36.0
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 4.8e-07 59.3 86 36.0
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 4.8e-07 59.3 86 36.0
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 4.8e-07 59.3 86 34.9
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 4.8e-07 59.3 86 36.0
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 4.8e-07 59.3 86 37.2
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 6.3e-07 58.9 86 37.2
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 6.3e-07 58.9 86 36.0
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 6.3e-07 58.9 86 34.9
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 8.2e-07 58.5 86 38.4
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 8.2e-07 58.5 105 34.3
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 8.2e-07 58.5 86 36.0
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 8.2e-07 58.5 105 33.3
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 8.2e-07 58.5 86 36.0
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 8.2e-07 58.5 86 34.9
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 8.2e-07 58.5 86 33.7
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 8.2e-07 58.5 86 36.0
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 8.2e-07 58.5 86 36.0
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 8.2e-07 58.5 86 36.0
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 8.2e-07 58.5 86 36.0
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 8.2e-07 58.5 86 36.0
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 8.2e-07 58.5 86 37.2
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 8.2e-07 58.5 86 37.2
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 8.2e-07 58.5 87 35.6
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 34.9
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 34.9
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 34.9
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 34.9
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 34.9
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 34.9
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 34.9
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 1.1e-06 58.2 151 31.1
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 34.9
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 34.9
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 36.0
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 36.0
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 36.0
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 1.1e-06 58.2 105 35.2
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 34.9
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 34.9
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 34.9
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 36.0
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 36.0
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 36.0
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 34.9
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 34.9
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 34.9
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 34.9
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.1e-06 58.2 86 36.0
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 1.4e-06 57.8 105 33.3
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.4e-06 57.8 86 33.7
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 1.4e-06 57.8 105 33.3
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 1.4e-06 57.8 86 36.0
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 1.4e-06 57.8 86 34.9
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 1.4e-06 57.8 86 34.9
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.4e-06 57.8 86 34.9
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 1.4e-06 57.8 85 35.3
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 1.4e-06 57.8 86 37.2
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 1.4e-06 57.8 86 34.9
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 1.4e-06 57.8 86 34.9
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.4e-06 57.8 86 34.9
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.4e-06 57.8 86 33.7
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 1.4e-06 57.8 86 33.7
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.4e-06 57.8 86 34.9
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 1.4e-06 57.8 86 34.9
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 1.8e-06 57.4 86 33.7
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.8e-06 57.4 86 33.7
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.8e-06 57.4 86 33.7
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 1.8e-06 57.4 86 34.9
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.8e-06 57.4 86 33.7
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.8e-06 57.4 86 38.4
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.8e-06 57.4 86 34.9
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 1.8e-06 57.4 86 33.7
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 1.8e-06 57.4 154 29.2
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 1.8e-06 57.4 86 34.9
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.8e-06 57.4 86 33.7
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.8e-06 57.4 86 34.9
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 2.4e-06 57.0 86 33.7
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 2.4e-06 57.0 86 36.0
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 2.4e-06 57.0 86 33.7
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 2.4e-06 57.0 86 36.0
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 2.4e-06 57.0 86 36.0
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 2.4e-06 57.0 89 36.0
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 2.4e-06 57.0 86 34.9
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 2.4e-06 57.0 86 33.7
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 2.4e-06 57.0 86 33.7
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 2.4e-06 57.0 87 34.5
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 3.1e-06 56.6 86 34.9
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 3.1e-06 56.6 86 34.9
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 5.3e-06 55.8 72 37.5
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 5.3e-06 55.8 86 32.6
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 5.3e-06 55.8 86 32.6
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 5.3e-06 55.8 186 29.0
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 5.3e-06 55.8 86 32.6
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 7.0e-06 55.5 86 33.7
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 7.0e-06 55.5 86 32.6
PRCOL_00002153 Prasinoderma coloniale HOM05D024116 ORTHO05D023526 7.0e-06 55.5 115 36.5
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 9.1e-06 55.1 86 33.7


User provided reference genes

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