Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 4.0e-120 434.9 233 100.0
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 8.2e-41 171.4 228 44.7
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 7.2e-37 158.3 229 40.6
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 9.3e-37 157.9 224 42.4
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 6.1e-36 155.2 217 41.9
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 3.0e-35 152.9 229 38.9
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 1.9e-34 150.2 218 39.4
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.5e-34 149.8 233 37.8
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 2.5e-34 149.8 228 37.7
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 4.3e-34 149.1 231 37.7
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 1.3e-33 147.5 216 39.4
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 4.8e-33 145.6 232 37.9
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 6.3e-33 145.2 221 38.9
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 8.2e-33 144.8 229 37.1
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.1e-32 144.4 221 38.9
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 1.1e-32 144.4 227 37.4
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 2.4e-32 143.3 221 38.5
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 3.1e-32 142.9 218 37.2
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 3.1e-32 142.9 221 38.5
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 6.9e-32 141.7 218 37.6
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 6.9e-32 141.7 236 36.4
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 9.1e-32 141.4 218 37.6
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.2e-31 141.0 218 37.2
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 1.5e-31 140.6 221 38.5
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 2.0e-31 140.2 221 37.6
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 2.0e-31 140.2 220 38.2
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 2.0e-31 140.2 228 37.3
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 2.0e-31 140.2 220 36.4
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 2.6e-31 139.8 216 38.4
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 4.5e-31 139.0 219 37.9
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 5.9e-31 138.7 236 36.4
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.3e-30 137.5 218 36.7
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.3e-30 137.5 218 36.2
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 1.3e-30 137.5 219 37.9
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 1.3e-30 137.5 225 35.6
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.7e-30 137.1 224 37.1
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.7e-30 137.1 217 37.3
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 1.7e-30 137.1 233 35.2
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 1.7e-30 137.1 221 37.1
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.7e-30 137.1 221 38.5
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 2.2e-30 136.7 222 36.5
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 2.2e-30 136.7 223 35.9
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 2.2e-30 136.7 217 38.7
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 2.9e-30 136.3 214 36.4
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 2.9e-30 136.3 228 36.0
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 5.0e-30 135.6 215 37.2
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 5.0e-30 135.6 223 36.8
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 5.0e-30 135.6 218 35.8
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 5.0e-30 135.6 222 34.7
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 5.0e-30 135.6 222 36.9
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 5.0e-30 135.6 215 36.7
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 6.5e-30 135.2 218 35.3
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 6.5e-30 135.2 218 35.3
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.5e-30 135.2 223 36.8
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 6.5e-30 135.2 217 37.3
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 8.5e-30 134.8 218 36.2
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 8.5e-30 134.8 218 35.8
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 8.5e-30 134.8 222 39.2
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 8.5e-30 134.8 221 35.7
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-29 134.4 218 35.3
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.1e-29 134.4 218 35.8
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.1e-29 134.4 218 38.1
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 1.4e-29 134.0 215 37.2
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 1.4e-29 134.0 229 34.1
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 1.9e-29 133.7 218 35.3
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 1.9e-29 133.7 218 35.3
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.9e-29 133.7 218 36.7
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.9e-29 133.7 218 35.8
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.5e-29 133.3 224 36.6
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 2.5e-29 133.3 217 35.9
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 3.2e-29 132.9 218 35.3
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 5.5e-29 132.1 220 36.4
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 7.2e-29 131.7 218 35.3
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 9.4e-29 131.3 218 35.8
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 1.2e-28 131.0 220 34.5
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 1.2e-28 131.0 231 33.3
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.6e-28 130.6 215 34.9
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 2.1e-28 130.2 223 35.9
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 2.7e-28 129.8 222 33.8
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 3.6e-28 129.4 219 35.2
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 4.7e-28 129.0 220 35.5
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 6.1e-28 128.6 217 35.5
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 6.1e-28 128.6 215 34.9
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 7.9e-28 128.3 212 35.8
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 7.9e-28 128.3 221 34.8
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 7.9e-28 128.3 219 34.7
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.0e-27 127.9 220 35.5
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.0e-27 127.9 238 33.2
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 1.4e-27 127.5 220 33.6
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 1.4e-27 127.5 221 36.2
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.8e-27 127.1 219 34.2
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 2.3e-27 126.7 221 36.2
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 3.0e-27 126.3 214 34.6
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 3.0e-27 126.3 221 33.0
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 3.0e-27 126.3 220 34.1
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 3.0e-27 126.3 213 37.6
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 3.9e-27 125.9 221 33.0
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 3.9e-27 125.9 221 33.5
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 5.1e-27 125.6 219 33.3
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 6.7e-27 125.2 224 34.4
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 8.8e-27 124.8 214 35.5
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 1.1e-26 124.4 186 37.6
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.5e-26 124.0 215 35.8
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 2.0e-26 123.6 218 34.9
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 3.3e-26 122.9 224 33.0
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 4.4e-26 122.5 224 33.5
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 5.7e-26 122.1 223 34.5
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 9.7e-26 121.3 214 32.7
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 9.7e-26 121.3 223 34.5
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 9.7e-26 121.3 234 32.1
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 1.7e-25 120.6 215 35.8
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 4.8e-25 119.0 193 39.4
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 8.2e-25 118.2 199 38.7
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 1.1e-24 117.9 255 32.5
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 9.1e-24 114.8 218 34.4
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 1.5e-23 114.0 159 40.3
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 4.5e-23 112.5 150 41.3
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 5.9e-23 112.1 163 39.3
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 1.7e-22 110.5 275 30.2
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 5.0e-22 109.0 145 39.3
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 6.5e-22 108.6 151 38.4
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 6.5e-22 108.6 229 33.2
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 2.5e-21 106.7 218 32.1
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 4.2e-21 105.9 142 39.4
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.9e-19 99.4 141 39.7
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 2.0e-18 97.1 142 37.3
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 5.7e-18 95.5 218 29.8
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 1.7e-17 94.0 220 30.9
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 2.8e-17 93.2 174 35.1
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.4e-16 90.1 187 33.7
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.0e-15 87.0 171 33.3
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.6e-15 86.7 89 44.9
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 1.3e-14 84.3 170 34.1
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 5.0e-14 82.4 117 39.3
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 5.0e-14 82.4 216 27.8
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 4.2e-13 79.3 91 44.0
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 4.2e-13 79.3 117 35.9
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 4.2e-13 79.3 115 40.0
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.1e-12 77.0 150 37.3
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 5.2e-11 72.4 214 27.6
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 6.7e-11 72.0 123 38.2
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.5e-10 70.9 187 27.3
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 7.5e-10 68.6 214 23.4
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 4.8e-09 65.9 141 31.2
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 5.3e-08 62.4 135 31.9
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 9.1e-08 61.6 70 47.1
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 9.1e-08 61.6 127 32.3
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 2.7e-07 60.1 94 33.0


User provided reference genes

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