Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G584 Micromonas commoda HOM05D004602 ORTHO05D005906 0.0e+00 2450.6 1381 100.0
Pp3c3_32300 Physcomitrium patens HOM05D004602 ORTHO05D005906 5.7e-182 642.9 1322 34.3
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 7.4e-182 642.5 1291 35.5
SEGI_37933 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 5.5e-177 626.3 1311 35.2
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 7.2e-177 625.9 1323 34.7
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 2.6e-174 617.5 1312 34.1
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 5.0e-170 603.2 1306 34.3
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 6.5e-170 602.8 1307 34.9
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 1.1e-169 602.1 1322 33.7
Pp3c12_12160 Physcomitrium patens HOM05D004602 ORTHO05D005906 1.1e-169 602.1 1316 33.0
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 3.2e-169 600.5 1294 34.2
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 4.2e-169 600.1 1315 34.2
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 9.4e-169 599.0 1295 34.7
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 3.6e-168 597.0 1294 33.5
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 4.7e-168 596.7 1321 34.1
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 6.1e-168 596.3 1277 33.9
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 8.0e-168 595.9 1296 33.4
AagrBONN_evm.TU.Sc2ySwM_362.2771 Anthoceros agrestis HOM05D004602 ORTHO05D005906 1.8e-167 594.7 1281 34.2
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 1.8e-167 594.7 1304 33.6
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 1.8e-167 594.7 1294 34.0
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 1.8e-167 594.7 1314 33.7
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 2.3e-167 594.3 1272 34.0
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 5.2e-167 593.2 1302 33.0
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 6.7e-167 592.8 1311 33.8
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 1.1e-166 592.0 1302 33.6
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 1.5e-166 591.7 1291 33.8
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 2.6e-166 590.9 1316 33.5
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 2.6e-166 590.9 1287 34.1
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 5.7e-166 589.7 1298 33.0
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 7.4e-166 589.3 1311 33.1
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 7.4e-166 589.3 1289 33.4
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 2.2e-165 587.8 1326 33.6
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 2.2e-165 587.8 1277 33.2
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 2.2e-165 587.8 1301 33.5
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 2.8e-165 587.4 1301 33.1
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 3.7e-165 587.0 1299 33.1
TPR.G19659 Trifolium pratense HOM05D004602 ORTHO05D005906 3.7e-165 587.0 1310 33.0
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 6.3e-165 586.3 1300 33.2
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 1.1e-164 585.5 1288 33.7
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 1.1e-164 585.5 1308 33.4
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 1.4e-164 585.1 1301 33.6
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 1.4e-164 585.1 1315 33.0
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 4.1e-164 583.6 1295 33.1
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 5.3e-164 583.2 1288 33.2
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 9.1e-164 582.4 1298 33.2
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 1.2e-163 582.0 1288 32.8
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 2.0e-163 581.3 1300 33.1
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 2.0e-163 581.3 1316 32.8
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 2.6e-163 580.9 1299 32.9
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 2.6e-163 580.9 1316 32.8
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 7.7e-163 579.3 1299 32.9
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 7.7e-163 579.3 1299 32.9
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 7.7e-163 579.3 1310 32.7
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 1.0e-162 578.9 1300 32.9
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 1.0e-162 578.9 1295 32.5
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 1.0e-162 578.9 1295 32.5
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 1.7e-162 578.2 1293 32.9
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 5.0e-162 576.6 1299 32.7
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 6.5e-162 576.2 1315 33.5
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 6.5e-162 576.2 1302 33.3
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 6.5e-162 576.2 1297 32.6
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 1.5e-161 575.1 1297 33.0
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 3.2e-161 573.9 1296 32.7
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 4.2e-161 573.5 1281 32.7
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 5.5e-161 573.2 1295 32.7
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 5.5e-161 573.2 1298 33.6
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 7.2e-161 572.8 1302 33.3
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 9.4e-161 572.4 1296 32.6
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 1.2e-160 572.0 1301 32.9
Mapoly0022s0167 Marchantia polymorpha HOM05D004602 ORTHO05D005906 1.6e-160 571.6 1319 32.8
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 3.6e-160 570.5 1311 32.5
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 6.1e-160 569.7 1301 32.6
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 8.0e-160 569.3 1324 32.5
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 8.0e-160 569.3 1298 34.7
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 1.4e-159 568.5 1296 32.3
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 1.8e-159 568.2 1302 32.9
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 6.8e-159 566.2 1320 32.7
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 1.5e-158 565.1 1304 33.2
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 5.7e-158 563.1 1280 32.4
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 5.7e-158 563.1 1301 33.1
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 7.5e-158 562.8 1277 33.3
Haze_19715 Corylus avellana HOM05D004602 ORTHO05D005906 7.5e-158 562.8 1257 33.3
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 1.3e-157 562.0 1303 32.6
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 3.1e-156 557.4 1295 32.3
Sed0020412 Sechium edule HOM05D004602 ORTHO05D005906 5.4e-156 556.6 1305 31.9
Cpa.g.sc5.207 Carica papaya HOM05D004602 ORTHO05D005906 4.5e-155 553.5 1314 33.0
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 4.5e-155 553.5 1303 32.2
Zm00001eb329790 Zea mays HOM05D004602 ORTHO05D005906 7.2e-153 546.2 1183 33.4
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 3.6e-152 543.9 1319 31.5
CBR_g63081 Chara braunii HOM05D004602 ORTHO05D005906 2.3e-151 541.2 1312 33.2
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 8.8e-151 539.3 1324 31.4
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 2.2e-149 534.6 1142 34.9
SMO351G0392 Selaginella moellendorffii HOM05D004602 ORTHO05D005906 8.3e-149 532.7 1277 32.0
AUR62030338 Chenopodium quinoa HOM05D004602 ORTHO05D005906 5.4e-148 530.0 1317 31.9
Dinv08512 Davidia involucrata HOM05D004602 ORTHO05D005906 3.5e-147 527.3 1115 34.0
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 1.9e-145 521.5 1355 30.6
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 2.1e-144 518.1 1135 33.2
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 2.8e-144 517.7 1291 31.8
Nitab4.5_0000571g0090 Nicotiana tabacum HOM05D004602 ORTHO05D005906 8.0e-144 516.2 1236 32.0
Gohir.D11G323700 Gossypium hirsutum HOM05D004602 ORTHO05D005906 1.4e-143 515.4 1073 35.0
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 2.3e-143 514.6 1282 32.1
Nitab4.5_0001364g0050 Nicotiana tabacum HOM05D004602 ORTHO05D005906 6.8e-143 513.1 1225 32.4
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 1.5e-142 511.9 1300 30.6
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 1.4e-135 488.8 1426 29.7
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 3.1e-135 487.6 1270 31.3
AUR62040826 Chenopodium quinoa HOM05D004602 ORTHO05D005906 3.4e-134 484.2 1128 33.6
SHI28280 Sapria himalayana HOM05D004602 ORTHO05D005906 3.0e-130 471.1 1087 32.4
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 7.3e-129 466.5 1124 31.9
CiPaw.09G045900 Carya illinoinensis HOM05D004602 ORTHO05D005906 9.8e-126 456.1 1070 32.1
BcaNung07305 Brassica carinata HOM05D004602 ORTHO05D005906 8.4e-109 399.8 1005 32.7
FAN02G3171 Fragaria x ananassa HOM05D004602 ORTHO05D005906 5.3e-103 380.6 869 32.8
CANSAT56G2079 Cannabis sativa HOM05D004602 ORTHO05D005906 1.5e-89 335.9 709 35.5
Cfa024947 Carpinus fangiana HOM05D004602 ORTHO05D005906 5.5e-68 264.2 1150 25.3
Haze_26650 Corylus avellana HOM05D004602 ORTHO05D005906 1.1e-60 240.0 1255 25.0
CiPaw.16G087800 Carya illinoinensis HOM05D004602 ORTHO05D005906 5.9e-54 217.6 843 27.9
Cre10.g432500 Chlamydomonas reinhardtii HOM05D004602 ORTHO05D005906 3.8e-53 214.9 1387 24.4
COL.COLO4_37953 Corchorus olitorius HOM05D004602 ORTHO05D005906 1.1e-49 203.4 507 32.3
MBI13_g01621_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.4e-31 143.3 580 26.7
FvH4_6g26040 Fragaria vesca HOM05D004602 ORTHO05D005906 4.1e-23 115.2 359 27.6
CDE04G1839 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 1.9e-15 89.7 382 30.4
SEGI_14640 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 7.8e-14 84.3 227 28.6
SalBow8G3517 Salvia bowleyana HOM05D004602 ORTHO05D005906 8.6e-13 80.9 158 34.8
SalBow8G5198 Salvia bowleyana HOM05D004602 ORTHO05D005906 8.6e-13 80.9 158 34.8
SalBow8G5420 Salvia bowleyana HOM05D004602 ORTHO05D005906 7.3e-12 77.8 163 34.4
SHI28279 Sapria himalayana HOM05D004602 ORTHO05D005906 5.2e-10 71.6 168 31.0
Lalb_Chr06g0173621 Lupinus albus HOM05D004602 ORTHO05D005906 4.4e-09 68.6 174 31.6
Lalb_Chr06g0173611 Lupinus albus HOM05D004602 ORTHO05D005906 5.8e-09 68.2 53 62.3
MBI08_g38609_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.9e-08 65.9 130 34.6
MBI15_g03986_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.9e-08 65.9 208 29.8
MBI08_g40283_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 4.9e-08 65.1 132 34.1
MBI13_g41158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 6.4e-08 64.7 207 29.5
MELO3C008538.2 Cucumis melo HOM05D004602 ORTHO05D005906 3.2e-07 62.4 61 49.2
MBI06_g41970_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.6e-06 60.1 183 29.0


User provided reference genes

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