Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G573 Micromonas commoda HOM05D003627 ORTHO05D004307 4.0e-63 244.6 123 100.0
CBR_g8907 Chara braunii HOM05D003627 ORTHO05D004307 2.1e-32 142.5 121 59.5
AagrBONN_evm.TU.Sc2ySwM_344.1095 Anthoceros agrestis HOM05D003627 ORTHO05D004307 2.8e-32 142.1 123 60.2
Mapoly0020s0108 Marchantia polymorpha HOM05D003627 ORTHO05D004307 1.4e-28 129.8 123 52.0
Pp3c6_18020 Physcomitrium patens HOM05D003627 ORTHO05D004307 3.2e-28 128.6 121 55.4
PRCOL_00006283 Prasinoderma coloniale HOM05D003627 ORTHO05D004307 4.2e-28 128.3 123 53.7
Pp3c25_1520 Physcomitrium patens HOM05D003627 ORTHO05D004307 9.3e-28 127.1 121 54.5
SMO169G0058 Selaginella moellendorffii HOM05D003627 ORTHO05D004307 3.5e-27 125.2 111 60.4
Pp3c10_14460 Physcomitrium patens HOM05D003627 ORTHO05D004307 3.3e-25 118.6 119 52.1
Thhalv10026575m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 4.8e-24 114.8 123 49.6
SEGI_30503 Sequoiadendron giganteum HOM05D003627 ORTHO05D004307 2.4e-23 112.5 120 53.3
A01p05900 Brassica napus HOM05D003627 ORTHO05D004307 3.1e-23 112.1 123 49.6
C01p06520 Brassica napus HOM05D003627 ORTHO05D004307 3.1e-23 112.1 123 49.6
BraA01t00557Z Brassica rapa HOM05D003627 ORTHO05D004307 4.1e-23 111.7 123 49.6
Cpa.g.sc1755.1 Carica papaya HOM05D003627 ORTHO05D004307 5.3e-23 111.3 123 50.4
BolC1t00646H Brassica oleracea HOM05D003627 ORTHO05D004307 6.9e-23 110.9 123 48.8
Manes.16G119000 Manihot esculenta HOM05D003627 ORTHO05D004307 9.0e-23 110.5 123 51.2
Hma1.2p1_0000F.1_g000840 Hydrangea macrophylla HOM05D003627 ORTHO05D004307 1.2e-22 110.2 124 50.8
MD08G1143000 Malus domestica HOM05D003627 ORTHO05D004307 1.2e-22 110.2 123 49.6
HPP92_000819 Vanilla planifolia HOM05D003627 ORTHO05D004307 1.2e-22 110.2 116 52.6
CARHR240390 Cardamine hirsuta HOM05D003627 ORTHO05D004307 1.5e-22 109.8 123 48.0
CDE10G0960 Ceratophyllum demersum HOM05D003627 ORTHO05D004307 1.5e-22 109.8 122 50.0
Gohir.A13G206900 Gossypium hirsutum HOM05D003627 ORTHO05D004307 1.5e-22 109.8 123 50.4
Gohir.D13G211500 Gossypium hirsutum HOM05D003627 ORTHO05D004307 1.5e-22 109.8 123 50.4
Gorai.013G241600 Gossypium raimondii HOM05D003627 ORTHO05D004307 1.5e-22 109.8 123 50.4
Manes.03G017600 Manihot esculenta HOM05D003627 ORTHO05D004307 1.5e-22 109.8 123 50.4
Sabra18G0032500 Salix brachista HOM05D003627 ORTHO05D004307 1.5e-22 109.8 123 49.6
CDE10G0654 Ceratophyllum demersum HOM05D003627 ORTHO05D004307 2.0e-22 109.4 122 50.0
Gohir.A02G112400 Gossypium hirsutum HOM05D003627 ORTHO05D004307 2.0e-22 109.4 123 50.4
TAR626G0665 Trochodendron aralioides HOM05D003627 ORTHO05D004307 2.0e-22 109.4 122 50.0
Migut.A00309 Erythranthe guttata HOM05D003627 ORTHO05D004307 2.6e-22 109.0 124 50.8
Lsat_1_v5_gn_5_31481 Lactuca sativa HOM05D003627 ORTHO05D004307 2.6e-22 109.0 116 52.6
PSO170G3425 Papaver somniferum HOM05D003627 ORTHO05D004307 2.6e-22 109.0 124 51.6
PSO455G0147 Papaver somniferum HOM05D003627 ORTHO05D004307 2.6e-22 109.0 124 51.6
CANSAT78G1909 Cannabis sativa HOM05D003627 ORTHO05D004307 3.4e-22 108.6 123 50.4
Os07g0205000 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 3.4e-22 108.6 123 51.2
Potri.006G250000 Populus trichocarpa HOM05D003627 ORTHO05D004307 3.4e-22 108.6 123 48.8
ATR0737G081 Amborella trichopoda HOM05D003627 ORTHO05D004307 4.5e-22 108.2 124 50.8
Carub.0006s2330 Capsella rubella HOM05D003627 ORTHO05D004307 4.5e-22 108.2 123 49.6
Duzib187G0128 Durio zibethinus HOM05D003627 ORTHO05D004307 4.5e-22 108.2 123 51.2
Thhalv10023759m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 4.5e-22 108.2 123 48.0
Sp7g30260 Schrenkiella parvula HOM05D003627 ORTHO05D004307 4.5e-22 108.2 123 48.0
unitig_32.g10929 Utricularia gibba HOM05D003627 ORTHO05D004307 4.5e-22 108.2 114 51.8
Potri.018G031400 Populus trichocarpa HOM05D003627 ORTHO05D004307 5.9e-22 107.8 123 48.8
BcaC01g01021 Brassica carinata HOM05D003627 ORTHO05D004307 7.6e-22 107.5 123 48.0
BcaC03g17902 Brassica carinata HOM05D003627 ORTHO05D004307 7.6e-22 107.5 122 50.0
A02p39740 Brassica napus HOM05D003627 ORTHO05D004307 7.6e-22 107.5 122 50.0
A08p18170 Brassica napus HOM05D003627 ORTHO05D004307 7.6e-22 107.5 123 48.0
C02p59530 Brassica napus HOM05D003627 ORTHO05D004307 7.6e-22 107.5 122 50.0
C03p87330 Brassica napus HOM05D003627 ORTHO05D004307 7.6e-22 107.5 123 48.0
BolC3t21033H Brassica oleracea HOM05D003627 ORTHO05D004307 7.6e-22 107.5 123 48.0
BraA08t33770Z Brassica rapa HOM05D003627 ORTHO05D004307 7.6e-22 107.5 123 48.0
CiPaw.07G220400 Carya illinoinensis HOM05D003627 ORTHO05D004307 7.6e-22 107.5 123 50.4
RcHm_v2.0_Chr6g0298671 Rosa chinensis HOM05D003627 ORTHO05D004307 7.6e-22 107.5 123 48.8
Sp4g05010 Schrenkiella parvula HOM05D003627 ORTHO05D004307 7.6e-22 107.5 123 48.0
Sed0001403 Sechium edule HOM05D003627 ORTHO05D004307 7.6e-22 107.5 123 48.8
THA.LOC104803827 Tarenaya hassleriana HOM05D003627 ORTHO05D004307 7.6e-22 107.5 123 47.2
Aqoxy7G02033 Aquilegia oxysepala HOM05D003627 ORTHO05D004307 1.0e-21 107.1 121 50.4
AL6G37230 Arabidopsis lyrata HOM05D003627 ORTHO05D004307 1.0e-21 107.1 123 48.8
BcaC09g52038 Brassica carinata HOM05D003627 ORTHO05D004307 1.0e-21 107.1 123 48.0
CARHR115730 Cardamine hirsuta HOM05D003627 ORTHO05D004307 1.0e-21 107.1 123 47.2
FvH4_2g29690 Fragaria vesca HOM05D003627 ORTHO05D004307 1.0e-21 107.1 123 48.8
FAN15G2106 Fragaria x ananassa HOM05D003627 ORTHO05D004307 1.0e-21 107.1 123 48.8
FAN20G0596 Fragaria x ananassa HOM05D003627 ORTHO05D004307 1.0e-21 107.1 123 48.8
FAN24G2732 Fragaria x ananassa HOM05D003627 ORTHO05D004307 1.0e-21 107.1 123 48.8
FAN27G2400 Fragaria x ananassa HOM05D003627 ORTHO05D004307 1.0e-21 107.1 123 48.8
Prupe.1G472700 Prunus persica HOM05D003627 ORTHO05D004307 1.0e-21 107.1 123 48.8
Thecc.09G148600 Theobroma cacao HOM05D003627 ORTHO05D004307 1.0e-21 107.1 123 49.6
BcaB03g12747 Brassica carinata HOM05D003627 ORTHO05D004307 1.3e-21 106.7 123 48.0
ClCG05G017090 Citrullus lanatus HOM05D003627 ORTHO05D004307 1.3e-21 106.7 123 48.8
HanXRQChr06g0179891 Helianthus annuus HOM05D003627 ORTHO05D004307 1.3e-21 106.7 122 50.0
PGR044G1161 Punica granatum HOM05D003627 ORTHO05D004307 1.3e-21 106.7 123 50.4
Duzib150G1042 Durio zibethinus HOM05D003627 ORTHO05D004307 1.7e-21 106.3 123 48.0
Lj7A717G55 Lonicera japonica HOM05D003627 ORTHO05D004307 1.7e-21 106.3 124 49.2
Migut.E01481 Erythranthe guttata HOM05D003627 ORTHO05D004307 2.2e-21 105.9 124 50.0
Carub.0007s0811 Capsella rubella HOM05D003627 ORTHO05D004307 2.9e-21 105.5 123 45.5
Cfa013184 Carpinus fangiana HOM05D003627 ORTHO05D004307 2.9e-21 105.5 123 48.8
ECA240G2460 Erigeron canadensis HOM05D003627 ORTHO05D004307 2.9e-21 105.5 122 47.5
Nn2g11929 Nelumbo nucifera HOM05D003627 ORTHO05D004307 2.9e-21 105.5 122 48.4
Atru.chr7.2370 Acer truncatum HOM05D003627 ORTHO05D004307 3.8e-21 105.1 123 47.2
Actinidia15690 Actinidia chinensis HOM05D003627 ORTHO05D004307 3.8e-21 105.1 124 50.0
AT4G32470 Arabidopsis thaliana HOM05D003627 ORTHO05D004307 3.8e-21 105.1 123 45.5
COL.COLO4_23986 Corchorus olitorius HOM05D003627 ORTHO05D004307 3.8e-21 105.1 123 49.6
MD15G1119900 Malus domestica HOM05D003627 ORTHO05D004307 3.8e-21 105.1 123 48.0
Nitab4.5_0006827g0010 Nicotiana tabacum HOM05D003627 ORTHO05D004307 3.8e-21 105.1 116 51.7
PGR044G1771 Punica granatum HOM05D003627 ORTHO05D004307 3.8e-21 105.1 123 50.4
GSVIVG01035802001 Vitis vinifera HOM05D003627 ORTHO05D004307 3.8e-21 105.1 123 47.2
CSS0004095 Camellia sinensis var. sinensis HOM05D003627 ORTHO05D004307 5.0e-21 104.8 124 50.0
Peaxi162Scf00341g00821 Petunia axillaris HOM05D003627 ORTHO05D004307 5.0e-21 104.8 124 50.0
HPP92_001612 Vanilla planifolia HOM05D003627 ORTHO05D004307 5.0e-21 104.8 96 59.4
Dinv11613 Davidia involucrata HOM05D003627 ORTHO05D004307 6.5e-21 104.4 124 47.6
Eucgr.C01792 Eucalyptus grandis HOM05D003627 ORTHO05D004307 6.5e-21 104.4 123 48.0
Eucgr.C02813 Eucalyptus grandis HOM05D003627 ORTHO05D004307 6.5e-21 104.4 123 49.6
MBI01_g13086_MAGBIO Magnolia biondii HOM05D003627 ORTHO05D004307 6.5e-21 104.4 122 49.2
Oeu045199.1 Olea europaea HOM05D003627 ORTHO05D004307 6.5e-21 104.4 116 50.0
TPR.G15658 Trifolium pratense HOM05D003627 ORTHO05D004307 6.5e-21 104.4 123 47.2
Glyma.17G208000 Glycine max HOM05D003627 ORTHO05D004307 8.5e-21 104.0 123 48.8
Medtr1g011880 Medicago truncatula HOM05D003627 ORTHO05D004307 8.5e-21 104.0 123 48.0
Zm00001eb094460 Zea mays HOM05D003627 ORTHO05D004307 8.5e-21 104.0 123 50.4
Zm00001eb212550 Zea mays HOM05D003627 ORTHO05D004307 8.5e-21 104.0 116 49.1
AT5G25450 Arabidopsis thaliana HOM05D003627 ORTHO05D004307 1.1e-20 103.6 123 48.0
Duzib168G1482 Durio zibethinus HOM05D003627 ORTHO05D004307 1.1e-20 103.6 123 48.8
Cre06.g262700 Chlamydomonas reinhardtii HOM05D003627 ORTHO05D004307 1.4e-20 103.2 119 48.7
MELO3C003682.2 Cucumis melo HOM05D003627 ORTHO05D004307 1.4e-20 103.2 123 48.0
ECA236G1938 Erigeron canadensis HOM05D003627 ORTHO05D004307 1.4e-20 103.2 122 48.4
HanXRQChr05g0142301 Helianthus annuus HOM05D003627 ORTHO05D004307 1.4e-20 103.2 122 49.2
unitig_748.g8200 Utricularia gibba HOM05D003627 ORTHO05D004307 1.4e-20 103.2 114 50.0
MSTRG.11762 Avicennia marina HOM05D003627 ORTHO05D004307 1.9e-20 102.8 124 49.2
CSS0039202 Camellia sinensis var. sinensis HOM05D003627 ORTHO05D004307 1.9e-20 102.8 124 48.4
Thhalv10005137m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 1.9e-20 102.8 123 47.2
VMungo0647G0605 Vigna mungo HOM05D003627 ORTHO05D004307 1.9e-20 102.8 123 48.8
Peaxi162Scf00361g00612 Petunia axillaris HOM05D003627 ORTHO05D004307 2.5e-20 102.4 119 47.1
HanXRQChr03g0062131 Helianthus annuus HOM05D003627 ORTHO05D004307 3.2e-20 102.1 122 48.4
Psat6g030080 Pisum sativum HOM05D003627 ORTHO05D004307 3.2e-20 102.1 123 46.3
Sed0003789 Sechium edule HOM05D003627 ORTHO05D004307 3.2e-20 102.1 123 48.0
CsaV3_3G046570 Cucumis sativus L. HOM05D003627 ORTHO05D004307 4.2e-20 101.7 123 48.0
Oeu031576.1 Olea europaea HOM05D003627 ORTHO05D004307 4.2e-20 101.7 116 50.0
Cc11_g01730 Coffea canephora HOM05D003627 ORTHO05D004307 5.5e-20 101.3 96 56.2
Phvul.001G121500 Phaseolus vulgaris HOM05D003627 ORTHO05D004307 5.5e-20 101.3 123 48.0
Zm00001eb061560 Zea mays HOM05D003627 ORTHO05D004307 5.5e-20 101.3 124 47.6
MSTRG.13989 Avicennia marina HOM05D003627 ORTHO05D004307 7.2e-20 100.9 124 49.2
CiPaw.08G013800 Carya illinoinensis HOM05D003627 ORTHO05D004307 7.2e-20 100.9 123 48.0
Ca_12928_v3 Cicer arietinum L. HOM05D003627 ORTHO05D004307 7.2e-20 100.9 123 45.5
Lj1g0024003 Lotus japonicus HOM05D003627 ORTHO05D004307 9.3e-20 100.5 123 45.5
Os03g0806900 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 1.2e-19 100.1 124 46.8
Lsat_1_v5_gn_8_57600 Lactuca sativa HOM05D003627 ORTHO05D004307 1.6e-19 99.8 123 45.5
Lalb_Chr08g0243901 Lupinus albus HOM05D003627 ORTHO05D004307 2.7e-19 99.0 123 45.5
CAN.G98.17 Capsicum annuum HOM05D003627 ORTHO05D004307 3.6e-19 98.6 116 48.3
TAR636G0318 Trochodendron aralioides HOM05D003627 ORTHO05D004307 3.6e-19 98.6 112 48.2
AUR62024869 Chenopodium quinoa HOM05D003627 ORTHO05D004307 4.6e-19 98.2 122 46.7
Lalb_Chr23g0268801 Lupinus albus HOM05D003627 ORTHO05D004307 6.1e-19 97.8 123 45.5
Solyc08g067020.4 Solanum lycopersicum HOM05D003627 ORTHO05D004307 6.1e-19 97.8 116 48.3
Sopen08g020960 Solanum pennellii HOM05D003627 ORTHO05D004307 6.1e-19 97.8 116 48.3
Lsat_1_v5_gn_7_42641 Lactuca sativa HOM05D003627 ORTHO05D004307 7.9e-19 97.4 122 45.1
AL7G19340 Arabidopsis lyrata HOM05D003627 ORTHO05D004307 1.0e-18 97.1 139 40.3
Glyma.14G126300 Glycine max HOM05D003627 ORTHO05D004307 1.4e-18 96.7 112 49.1
SGA_v2.0_scaffold169G38619 Striga asiatica HOM05D003627 ORTHO05D004307 1.4e-18 96.7 144 44.4
PGSC0003DMG400029087 Solanum tuberosum HOM05D003627 ORTHO05D004307 3.0e-18 95.5 116 47.4
Nn8g39358 Nelumbo nucifera HOM05D003627 ORTHO05D004307 5.7e-17 91.3 109 47.7
Sabra06G0195600 Salix brachista HOM05D003627 ORTHO05D004307 5.7e-17 91.3 98 49.0
Sc09g0008620 Simmondsia chinensis HOM05D003627 ORTHO05D004307 5.7e-17 91.3 94 53.2
Actinidia14624 Actinidia chinensis HOM05D003627 ORTHO05D004307 7.4e-17 90.9 103 50.5
TWI32G0136 Tripterygium wilfordii HOM05D003627 ORTHO05D004307 1.3e-16 90.1 123 45.5
TAR625G0096 Trochodendron aralioides HOM05D003627 ORTHO05D004307 1.3e-16 90.1 98 49.0
Aa31LG2G19380 Aethionema arabicum HOM05D003627 ORTHO05D004307 2.2e-16 89.4 98 45.9
BolC2t12016H Brassica oleracea HOM05D003627 ORTHO05D004307 2.8e-16 89.0 97 49.5
BraA02t08939Z Brassica rapa HOM05D003627 ORTHO05D004307 2.8e-16 89.0 97 49.5
DCAR_003029 Daucus carota HOM05D003627 ORTHO05D004307 2.8e-16 89.0 130 43.8
TWI34G0954 Tripterygium wilfordii HOM05D003627 ORTHO05D004307 3.7e-16 88.6 123 44.7
arahy.Tifrunner.gnm1.ann1.J127JW Arachis hypogaea HOM05D003627 ORTHO05D004307 6.3e-16 87.8 158 37.3
QL02p087302 Quercus lobata HOM05D003627 ORTHO05D004307 6.3e-16 87.8 83 55.4
Actinidia13260 Actinidia chinensis HOM05D003627 ORTHO05D004307 1.1e-15 87.0 91 50.5
Gorai.013G110700 Gossypium raimondii HOM05D003627 ORTHO05D004307 1.4e-15 86.7 98 48.0
Hund03017 Selenicereus undatus HOM05D003627 ORTHO05D004307 1.4e-15 86.7 113 45.1
Ciclev10009887m.g Citrus clementina HOM05D003627 ORTHO05D004307 1.8e-15 86.3 98 45.9
Gohir.D03G071300 Gossypium hirsutum HOM05D003627 ORTHO05D004307 2.4e-15 85.9 103 45.6
QL02p023157 Quercus lobata HOM05D003627 ORTHO05D004307 3.1e-15 85.5 98 49.0
SGA_v2.0_scaffold22G09938 Striga asiatica HOM05D003627 ORTHO05D004307 1.2e-14 83.6 124 45.2
Gohir.1Z049369 Gossypium hirsutum HOM05D003627 ORTHO05D004307 2.0e-14 82.8 71 59.2
SalBow4G0188 Salvia bowleyana HOM05D003627 ORTHO05D004307 2.0e-14 82.8 97 48.5
Sc06g0000590 Simmondsia chinensis HOM05D003627 ORTHO05D004307 2.0e-14 82.8 91 47.3
Dinv30181 Davidia involucrata HOM05D003627 ORTHO05D004307 5.9e-14 81.3 91 48.4
Rhsim02G0194100 Rhododendron simsii HOM05D003627 ORTHO05D004307 2.2e-13 79.3 85 51.8
HanXRQChr06g0182081 Helianthus annuus HOM05D003627 ORTHO05D004307 5.0e-13 78.2 80 55.0
arahy.Tifrunner.gnm1.ann1.8QVL0P Arachis hypogaea HOM05D003627 ORTHO05D004307 2.5e-12 75.9 83 50.6
SGA_v2.0_scaffold18G08283 Striga asiatica HOM05D003627 ORTHO05D004307 3.2e-12 75.5 85 51.8
Haze_21577 Corylus avellana HOM05D003627 ORTHO05D004307 1.6e-11 73.2 84 48.8
Oeu030075.1 Olea europaea HOM05D003627 ORTHO05D004307 1.6e-11 73.2 77 51.9
Os08g0246400 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 2.7e-11 72.4 80 51.2
SalBow8G5246 Salvia bowleyana HOM05D003627 ORTHO05D004307 3.6e-11 72.0 85 48.2
SalBow8G5369 Salvia bowleyana HOM05D003627 ORTHO05D004307 3.6e-11 72.0 85 48.2
vmacro05197 Vaccinium macrocarpon HOM05D003627 ORTHO05D004307 3.6e-11 72.0 85 49.4
Ah.10g026040 Amaranthus hybridus HOM05D003627 ORTHO05D004307 4.7e-11 71.6 83 47.0
Ah.10g026070 Amaranthus hybridus HOM05D003627 ORTHO05D004307 4.7e-11 71.6 83 47.0
Nitab4.5_0000010g0100 Nicotiana tabacum HOM05D003627 ORTHO05D004307 1.8e-10 69.7 68 52.9
Nn1g01248 Nelumbo nucifera HOM05D001793 ORTHO05D001938 2.0e-09 66.2 97 38.1
MBI04_g38347_MAGBIO Magnolia biondii HOM05D003627 ORTHO05D004307 5.7e-09 64.7 60 60.0
CAN.G536.8 Capsicum annuum HOM05D003627 ORTHO05D001832 4.8e-08 61.6 64 53.1
SGA_v2.0_scaffold399G50806 Striga asiatica HOM05D005821 ORTHO05D006649 1.2e-06 57.0 93 40.9


User provided reference genes

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