Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 3.5e-246 854.7 507 100.0
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 1.5e-18 98.6 146 38.4
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 1.0e-16 92.4 153 32.7
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 1.8e-16 91.7 153 35.9
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 3.1e-16 90.9 153 34.0
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 5.2e-16 90.1 144 38.9
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 5.2e-16 90.1 153 34.6
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 5.2e-16 90.1 139 37.4
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 6.8e-16 89.7 136 33.8
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 6.8e-16 89.7 136 33.8
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 6.8e-16 89.7 128 36.7
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 8.9e-16 89.4 153 34.6
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 1.2e-15 89.0 133 35.3
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 1.2e-15 89.0 137 33.6
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.2e-15 89.0 144 35.4
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.2e-15 89.0 153 34.6
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 1.2e-15 89.0 148 32.4
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.5e-15 88.6 135 35.6
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 1.5e-15 88.6 144 34.7
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 1.5e-15 88.6 144 34.7
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 2.0e-15 88.2 126 38.1
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 2.0e-15 88.2 126 38.1
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 2.0e-15 88.2 126 39.7
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 2.0e-15 88.2 153 34.0
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 2.0e-15 88.2 135 35.6
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 2.0e-15 88.2 138 35.5
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 3.4e-15 87.4 144 31.9
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 3.4e-15 87.4 144 31.9
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 3.4e-15 87.4 153 34.0
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 3.4e-15 87.4 153 32.0
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 3.4e-15 87.4 153 32.0
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 3.4e-15 87.4 153 33.3
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 3.4e-15 87.4 153 33.3
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 4.4e-15 87.0 126 37.3
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 4.4e-15 87.0 126 37.3
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 4.4e-15 87.0 132 34.1
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 4.4e-15 87.0 144 33.3
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 5.8e-15 86.7 128 35.2
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 5.8e-15 86.7 144 35.4
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 5.8e-15 86.7 123 39.8
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 5.8e-15 86.7 125 35.2
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 5.8e-15 86.7 153 33.3
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 5.8e-15 86.7 146 34.2
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 5.8e-15 86.7 144 36.1
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 7.5e-15 86.3 128 35.9
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 7.5e-15 86.3 131 39.7
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 7.5e-15 86.3 132 34.8
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 9.8e-15 85.9 131 34.4
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 9.8e-15 85.9 139 34.5
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 9.8e-15 85.9 144 33.3
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 9.8e-15 85.9 135 34.8
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 9.8e-15 85.9 136 32.4
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 1.3e-14 85.5 135 36.3
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 1.3e-14 85.5 136 32.4
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-14 85.5 136 32.4
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-14 85.5 136 32.4
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.3e-14 85.5 137 35.0
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 1.3e-14 85.5 153 32.7
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 1.7e-14 85.1 132 34.1
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 1.7e-14 85.1 137 35.0
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 1.7e-14 85.1 153 32.0
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 1.7e-14 85.1 136 32.4
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 2.2e-14 84.7 132 34.1
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.2e-14 84.7 153 30.1
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 2.2e-14 84.7 132 34.8
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 2.2e-14 84.7 153 31.4
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 2.9e-14 84.3 144 34.7
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 2.9e-14 84.3 153 32.7
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 2.9e-14 84.3 137 32.8
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 2.9e-14 84.3 132 34.8
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 2.9e-14 84.3 124 36.3
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 2.9e-14 84.3 144 34.0
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 2.9e-14 84.3 144 35.4
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 2.9e-14 84.3 144 35.4
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 2.9e-14 84.3 124 36.3
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 3.7e-14 84.0 135 34.1
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 3.7e-14 84.0 129 33.3
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 3.7e-14 84.0 123 35.8
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 3.7e-14 84.0 122 37.7
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 3.7e-14 84.0 144 35.4
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 3.7e-14 84.0 132 34.1
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 4.9e-14 83.6 126 33.3
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 4.9e-14 83.6 148 33.1
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 6.4e-14 83.2 135 33.3
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 6.4e-14 83.2 132 32.6
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 6.4e-14 83.2 123 35.8
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 8.3e-14 82.8 135 34.1
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 8.3e-14 82.8 124 35.5
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 1.1e-13 82.4 132 31.8
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 1.1e-13 82.4 132 31.8
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 1.1e-13 82.4 132 31.8
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 1.1e-13 82.4 132 31.8
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 1.1e-13 82.4 132 32.6
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 1.1e-13 82.4 144 32.6
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 1.1e-13 82.4 133 34.6
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 1.1e-13 82.4 153 30.7
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 1.4e-13 82.0 132 32.6
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 1.9e-13 81.6 123 36.6
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 1.9e-13 81.6 144 32.6
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 2.4e-13 81.3 132 31.8
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 2.4e-13 81.3 123 33.3
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 2.4e-13 81.3 126 38.9
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 3.2e-13 80.9 144 31.2
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 4.1e-13 80.5 137 32.1
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 5.4e-13 80.1 132 31.8
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 7.0e-13 79.7 126 34.1
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 7.0e-13 79.7 135 32.6
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 7.0e-13 79.7 132 34.1
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 1.2e-12 79.0 123 37.4
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 2.0e-12 78.2 132 31.1
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 6.0e-12 76.6 126 34.9
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 7.8e-12 76.3 158 28.5
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 1.0e-11 75.9 148 29.7
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 1.7e-11 75.1 136 32.4
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 1.7e-11 75.1 126 33.3
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 1.5e-10 72.0 54 51.9
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.5e-10 72.0 49 63.3
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 1.9e-10 71.6 51 56.9
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 1.2e-09 68.9 51 56.9
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.6e-09 67.4 129 29.5
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 4.7e-09 67.0 145 29.0
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 2.3e-08 64.7 72 44.4
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 5.2e-08 63.5 129 28.7
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 5.2e-08 63.5 129 28.7
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 3.4e-07 60.8 137 29.9


User provided reference genes

Program Settings