Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 6.5e-114 414.1 209 100.0
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 3.3e-49 199.1 213 52.6
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 2.6e-46 189.5 210 52.9
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 5.8e-46 188.3 210 51.0
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 3.8e-45 185.7 210 50.0
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 3.8e-45 185.7 210 50.0
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 3.8e-45 185.7 211 50.2
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 8.4e-45 184.5 210 49.5
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 8.4e-45 184.5 210 51.0
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 1.1e-44 184.1 211 48.8
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 1.4e-44 183.7 210 48.6
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.9e-44 183.3 210 49.5
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 2.4e-44 183.0 210 49.0
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 4.2e-44 182.2 211 50.2
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 4.2e-44 182.2 210 48.6
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 4.2e-44 182.2 210 49.5
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 5.4e-44 181.8 210 49.5
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 5.4e-44 181.8 210 48.6
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 7.1e-44 181.4 212 49.1
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 7.1e-44 181.4 210 50.5
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 7.1e-44 181.4 210 50.5
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 1.2e-43 180.6 210 49.0
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 1.6e-43 180.3 210 50.0
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 1.6e-43 180.3 211 48.3
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 1.6e-43 180.3 210 50.0
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 2.7e-43 179.5 210 48.6
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 2.7e-43 179.5 210 48.6
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 2.7e-43 179.5 210 50.0
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 2.7e-43 179.5 211 49.8
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 3.5e-43 179.1 213 49.8
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 3.5e-43 179.1 210 50.0
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 3.5e-43 179.1 210 49.5
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 4.6e-43 178.7 208 50.0
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 4.6e-43 178.7 210 48.1
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 6.0e-43 178.3 210 49.0
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 7.8e-43 177.9 213 49.3
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 7.8e-43 177.9 210 48.6
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 7.8e-43 177.9 210 48.6
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 7.8e-43 177.9 210 50.5
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 1.0e-42 177.6 210 48.6
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 1.0e-42 177.6 211 49.3
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 1.0e-42 177.6 209 48.8
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 1.0e-42 177.6 208 49.0
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 1.3e-42 177.2 210 47.1
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 1.7e-42 176.8 210 48.1
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 1.7e-42 176.8 210 48.1
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 1.7e-42 176.8 210 48.1
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 1.7e-42 176.8 210 48.1
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 1.7e-42 176.8 213 48.4
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 1.7e-42 176.8 210 47.6
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 1.7e-42 176.8 210 49.0
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 1.7e-42 176.8 210 51.0
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 1.7e-42 176.8 208 51.4
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 1.7e-42 176.8 210 49.0
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 2.3e-42 176.4 210 48.1
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 2.3e-42 176.4 210 47.1
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 3.0e-42 176.0 210 48.1
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 3.0e-42 176.0 210 47.1
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 3.9e-42 175.6 210 49.0
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 3.9e-42 175.6 208 49.5
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 5.1e-42 175.3 210 49.0
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 5.1e-42 175.3 232 44.4
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 5.1e-42 175.3 211 48.3
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 6.6e-42 174.9 208 48.6
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 6.6e-42 174.9 215 47.0
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 8.7e-42 174.5 210 47.1
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 1.1e-41 174.1 213 46.0
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 1.1e-41 174.1 213 46.5
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 1.1e-41 174.1 215 46.0
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.5e-41 173.7 210 49.0
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.9e-41 173.3 210 48.6
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 1.9e-41 173.3 210 48.1
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 2.5e-41 172.9 210 47.6
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 2.5e-41 172.9 210 48.1
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 2.5e-41 172.9 208 47.1
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 3.3e-41 172.6 210 47.1
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 3.3e-41 172.6 210 48.1
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 4.3e-41 172.2 210 48.1
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 7.3e-41 171.4 210 46.7
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 7.3e-41 171.4 213 46.5
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 7.3e-41 171.4 210 47.6
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 1.3e-40 170.6 210 46.7
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 1.3e-40 170.6 211 47.9
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 2.1e-40 169.9 210 46.2
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 2.8e-40 169.5 210 46.7
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 2.8e-40 169.5 211 48.3
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 6.2e-40 168.3 210 47.1
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 8.1e-40 167.9 211 47.4
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 8.1e-40 167.9 210 46.7
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 1.1e-39 167.5 213 46.0
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 3.1e-39 166.0 210 46.2
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 5.3e-39 165.2 217 43.8
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 1.2e-38 164.1 213 45.1
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 2.0e-38 163.3 210 47.6
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 2.6e-38 162.9 179 54.7
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 3.4e-38 162.5 218 45.4
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 1.1e-36 157.5 210 45.2
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 1.1e-36 157.5 211 45.5
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 4.2e-36 155.6 192 49.0
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 2.1e-35 153.3 209 43.5
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 7.8e-35 151.4 213 43.2
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 3.0e-34 149.4 210 43.3
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 5.1e-34 148.7 216 44.4
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 8.7e-34 147.9 167 48.5
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 3.6e-32 142.5 183 47.0
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 3.4e-30 136.0 223 36.8
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 3.4e-30 136.0 223 36.8
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 7.6e-30 134.8 183 43.7
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 1.4e-28 130.6 167 46.1
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 1.9e-28 130.2 166 45.8
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 4.2e-28 129.0 161 47.8
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 2.1e-27 126.7 199 45.2
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 7.9e-27 124.8 161 47.8
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 3.0e-26 122.9 140 48.6
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 7.4e-25 118.2 188 41.5
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 3.4e-22 109.4 102 55.9
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 3.4e-22 109.4 102 55.9
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 1.3e-21 107.5 250 35.2
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 1.7e-21 107.1 189 37.6
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 2.7e-19 99.8 164 39.6
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 6.2e-16 88.6 95 51.6
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 1.3e-13 80.9 146 37.7
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 6.1e-11 72.0 72 51.4
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 5.7e-09 65.5 86 41.9
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 8.2e-08 61.6 47 63.8


User provided reference genes

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