Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G448 Micromonas commoda HOM05D005874 ORTHO05D007206 5.9e-163 577.4 278 100.0
SMO356G0262 Selaginella moellendorffii HOM05D005874 ORTHO05D007206 8.5e-45 184.9 279 40.1
Mapoly0004s0142 Marchantia polymorpha HOM05D005874 ORTHO05D007206 5.2e-42 175.6 281 36.3
Dinv40230 Davidia involucrata HOM05D005874 ORTHO05D007206 8.8e-42 174.9 284 34.5
Actinidia05739 Actinidia chinensis HOM05D005874 ORTHO05D007206 1.7e-40 170.6 285 34.0
ATR0487G009 Amborella trichopoda HOM05D005874 ORTHO05D007206 4.8e-40 169.1 287 33.1
CiPaw.07G012300 Carya illinoinensis HOM05D005874 ORTHO05D007206 6.3e-40 168.7 287 34.1
AagrBONN_evm.TU.Sc2ySwM_362.837 Anthoceros agrestis HOM05D005874 ORTHO05D007206 1.1e-39 167.9 207 41.1
Hma1.2p1_0071F.1_g037960 Hydrangea macrophylla HOM05D005874 ORTHO05D007206 7.0e-39 165.2 288 33.7
Solyc08g029200.3 Solanum lycopersicum HOM05D005874 ORTHO05D007206 9.1e-39 164.9 288 33.3
CsaV3_3G003940 Cucumis sativus L. HOM05D005874 ORTHO05D007206 1.2e-38 164.5 287 33.1
GSVIVG01022009001 Vitis vinifera HOM05D005874 ORTHO05D007206 1.6e-38 164.1 287 34.8
BcaC04g23685 Brassica carinata HOM05D005874 ORTHO05D007206 2.7e-38 163.3 284 33.8
HPP92_003153 Vanilla planifolia HOM05D005874 ORTHO05D007206 2.7e-38 163.3 285 33.7
Dinv22927 Davidia involucrata HOM05D005874 ORTHO05D007206 3.5e-38 162.9 285 33.7
C09p05680 Brassica napus HOM05D005874 ORTHO05D007206 5.9e-38 162.2 284 33.8
BolC9t53497H Brassica oleracea HOM05D005874 ORTHO05D007206 5.9e-38 162.2 284 33.8
Os03g0363900 Oryza sativa ssp. japonica HOM05D005874 ORTHO05D007206 7.7e-38 161.8 285 31.9
Sopen08g010120 Solanum pennellii HOM05D005874 ORTHO05D007206 7.7e-38 161.8 285 32.6
Atru.chr2.537 Acer truncatum HOM05D005874 ORTHO05D007206 1.0e-37 161.4 285 33.0
FAN14G1317 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.3e-37 161.0 283 32.9
PSO210G2121 Papaver somniferum HOM05D005874 ORTHO05D007206 1.3e-37 161.0 284 32.7
A09p05220 Brassica napus HOM05D005874 ORTHO05D007206 1.7e-37 160.6 284 33.5
BraA09t36161Z Brassica rapa HOM05D005874 ORTHO05D007206 1.7e-37 160.6 284 33.5
MELO3C014079.2 Cucumis melo HOM05D005874 ORTHO05D007206 1.7e-37 160.6 287 32.4
TWI36G0483 Tripterygium wilfordii HOM05D005874 ORTHO05D007206 1.7e-37 160.6 291 33.7
Migut.L01513 Erythranthe guttata HOM05D005874 ORTHO05D007206 2.2e-37 160.2 282 31.9
PSO832G1738 Papaver somniferum HOM05D005874 ORTHO05D007206 2.2e-37 160.2 284 32.4
Prupe.6G333100 Prunus persica HOM05D005874 ORTHO05D007206 2.2e-37 160.2 284 31.3
QL03p002925 Quercus lobata HOM05D005874 ORTHO05D007206 2.2e-37 160.2 289 34.3
FAN05G4189 Fragaria x ananassa HOM05D005874 ORTHO05D007206 6.5e-37 158.7 286 31.1
BcaB04g19660 Brassica carinata HOM05D005874 ORTHO05D007206 8.5e-37 158.3 284 32.7
CSS0017417 Camellia sinensis var. sinensis HOM05D005874 ORTHO05D007206 8.5e-37 158.3 307 33.6
FvH4_6g04920 Fragaria vesca HOM05D005874 ORTHO05D007206 8.5e-37 158.3 286 31.5
Aa31LG5G15480 Aethionema arabicum HOM05D005874 ORTHO05D007206 1.1e-36 157.9 284 33.1
CAN.G56.14 Capsicum annuum HOM05D005874 ORTHO05D007206 1.1e-36 157.9 285 31.9
Lsat_1_v5_gn_4_139320 Lactuca sativa HOM05D005874 ORTHO05D007206 1.5e-36 157.5 284 33.1
MD04G1213200 Malus domestica HOM05D005874 ORTHO05D007206 1.5e-36 157.5 284 32.0
FAN05G2497 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.9e-36 157.1 286 30.8
HanXRQChr09g0254601 Helianthus annuus HOM05D005874 ORTHO05D007206 1.9e-36 157.1 284 32.0
MD12G1227400 Malus domestica HOM05D005874 ORTHO05D007206 1.9e-36 157.1 284 32.0
FAN09G3845 Fragaria x ananassa HOM05D005874 ORTHO05D007206 2.5e-36 156.8 286 31.1
MSTRG.10544 Avicennia marina HOM05D005874 ORTHO05D007206 5.5e-36 155.6 285 32.3
CDE12G0821 Ceratophyllum demersum HOM05D005874 ORTHO05D007206 7.2e-36 155.2 285 31.6
Haze_04267 Corylus avellana HOM05D005874 ORTHO05D007206 1.2e-35 154.5 242 36.0
RcHm_v2.0_Chr3g0453421 Rosa chinensis HOM05D005874 ORTHO05D007206 1.2e-35 154.5 282 30.9
BcaB04g19663 Brassica carinata HOM05D005874 ORTHO05D007206 1.6e-35 154.1 281 33.8
Medtr7g114080 Medicago truncatula HOM05D005874 ORTHO05D007206 1.6e-35 154.1 288 33.3
Glyma.19G239400 Glycine max HOM05D005874 ORTHO05D007206 2.7e-35 153.3 286 33.2
Peaxi162Scf00071g00714 Petunia axillaris HOM05D005874 ORTHO05D007206 2.7e-35 153.3 209 34.9
Hund07023 Selenicereus undatus HOM05D005874 ORTHO05D007206 2.7e-35 153.3 201 38.8
Sc06g0003460 Simmondsia chinensis HOM05D005874 ORTHO05D007206 2.7e-35 153.3 284 32.4
VMungo0540G0326 Vigna mungo HOM05D005874 ORTHO05D007206 2.7e-35 153.3 285 31.6
Glyma.03G242000 Glycine max HOM05D005874 ORTHO05D007206 3.6e-35 152.9 286 33.2
Eucgr.B02032 Eucalyptus grandis HOM05D005874 ORTHO05D007206 4.7e-35 152.5 284 32.0
Ah.04g159940 Amaranthus hybridus HOM05D005874 ORTHO05D007206 8.0e-35 151.8 290 32.4
Phvul.006G096000 Phaseolus vulgaris HOM05D005874 ORTHO05D007206 8.0e-35 151.8 285 31.6
ECA232G3849 Erigeron canadensis HOM05D005874 ORTHO05D007206 1.0e-34 151.4 284 32.0
Lalb_Chr15g0077001 Lupinus albus HOM05D005874 ORTHO05D007206 1.8e-34 150.6 283 32.2
TPR.G21789 Trifolium pratense HOM05D005874 ORTHO05D007206 1.8e-34 150.6 292 32.2
BcaC04g23688 Brassica carinata HOM05D005874 ORTHO05D007206 4.0e-34 149.4 284 32.7
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 8.8e-34 148.3 211 36.5
Actinidia30901 Actinidia chinensis HOM05D005874 ORTHO05D007206 1.2e-33 147.9 287 30.7
Psat3g009240 Pisum sativum HOM05D005874 ORTHO05D007206 2.6e-33 146.7 285 31.2
Aqoxy5G00596 Aquilegia oxysepala HOM05D005874 ORTHO05D007206 5.7e-33 145.6 288 33.0
unitig_578.g16415 Utricularia gibba HOM05D005874 ORTHO05D007206 5.7e-33 145.6 282 30.1
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 1.3e-32 144.4 248 32.7
arahy.Tifrunner.gnm1.ann1.MWM6LR Arachis hypogaea HOM05D005874 ORTHO05D007206 2.8e-32 143.3 288 32.6
arahy.Tifrunner.gnm1.ann1.QVQE66 Arachis hypogaea HOM05D005874 ORTHO05D007206 2.8e-32 143.3 288 32.6
CBR_g48996 Chara braunii HOM05D000019 ORTHO05D001702 6.3e-32 142.1 283 32.2
Gohir.D13G178100 Gossypium hirsutum HOM05D005874 ORTHO05D007206 1.8e-31 140.6 284 30.6
Gorai.013G203400 Gossypium raimondii HOM05D005874 ORTHO05D007206 1.8e-31 140.6 281 30.2
Cfa006515 Carpinus fangiana HOM05D005874 ORTHO05D007206 7.0e-31 138.7 240 32.9
Cre02.g090100 Chlamydomonas reinhardtii HOM05D005874 ORTHO05D007206 1.5e-28 131.0 288 31.2
SGA_v2.0_scaffold21G09411 Striga asiatica HOM05D005874 ORTHO05D007206 1.5e-28 131.0 281 29.9
CANSAT54G0668 Cannabis sativa HOM05D005874 ORTHO05D007206 1.9e-28 130.6 284 29.6
QL03p003516 Quercus lobata HOM05D005874 ORTHO05D007206 7.2e-28 128.6 233 34.3
SEGI_36862 Sequoiadendron giganteum HOM05D005874 ORTHO05D007206 9.5e-28 128.3 223 33.6
Gohir.A13G172200 Gossypium hirsutum HOM05D005874 ORTHO05D007206 1.2e-27 127.9 198 33.8
Sp2g20520 Schrenkiella parvula HOM05D005874 ORTHO05D007206 3.6e-27 126.3 284 28.9
vmacro05048 Vaccinium macrocarpon HOM05D005874 ORTHO05D007206 1.4e-26 124.4 286 28.7
Rhsim07G0178000 Rhododendron simsii HOM05D005874 ORTHO05D007206 2.3e-26 123.6 300 29.3
TAR362G0076 Trochodendron aralioides HOM05D005874 ORTHO05D007206 2.3e-26 123.6 287 29.3
Ciclev10001418m.g Citrus clementina HOM05D005874 ORTHO05D007206 1.2e-25 121.3 288 29.9
Cc02_g32810 Coffea canephora HOM05D005874 ORTHO05D007206 1.2e-25 121.3 287 28.9
Thhalv10020879m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 1.2e-25 121.3 284 29.2
Lj1g0003731 Lotus japonicus HOM05D005874 ORTHO05D007206 2.6e-25 120.2 288 29.2
Nn4g26084 Nelumbo nucifera HOM05D005874 ORTHO05D007206 3.4e-25 119.8 186 37.6
BraA05t22992Z Brassica rapa HOM05D005874 ORTHO05D007206 5.7e-25 119.0 282 28.4
BcaC05g29976 Brassica carinata HOM05D005874 ORTHO05D007206 7.5e-25 118.6 282 28.0
A05p42610 Brassica napus HOM05D005874 ORTHO05D007206 9.8e-25 118.2 282 28.0
BolC5t34886H Brassica oleracea HOM05D005874 ORTHO05D007206 1.7e-24 117.5 282 27.7
Thhalv10004370m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 1.7e-24 117.5 284 28.5
Oeu052135.1 Olea europaea HOM05D005874 ORTHO05D007206 1.7e-24 117.5 287 26.1
THA.LOC104818669 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 1.7e-24 117.5 282 29.1
Lj9A680G39 Lonicera japonica HOM05D005874 ORTHO05D007206 2.2e-24 117.1 168 36.3
Carub.0003s0419 Capsella rubella HOM05D005874 ORTHO05D007206 2.8e-24 116.7 284 28.2
C05p62300 Brassica napus HOM05D005874 ORTHO05D007206 3.7e-24 116.3 282 27.3
PRCOL_00005730 Prasinoderma coloniale HOM05D005874 ORTHO05D007206 8.3e-24 115.2 228 34.2
Manes.08G125000 Manihot esculenta HOM05D005874 ORTHO05D007206 1.1e-23 114.8 198 31.8
Potri.005G041000 Populus trichocarpa HOM05D005874 ORTHO05D007206 5.4e-23 112.5 211 30.8
Duzib128G0205 Durio zibethinus HOM05D005874 ORTHO05D007206 7.0e-23 112.1 284 26.1
CARHR185900 Cardamine hirsuta HOM05D005874 ORTHO05D007206 2.0e-22 110.5 284 28.2
Atru.chr2.564 Acer truncatum HOM05D005874 ORTHO05D007206 1.7e-21 107.5 285 28.1
Sabra05G0040000 Salix brachista HOM05D005874 ORTHO05D007206 5.0e-21 105.9 216 31.0
Thecc.05G296800 Theobroma cacao HOM05D005874 ORTHO05D007206 5.0e-21 105.9 246 26.4
Aa31LG11G9040 Aethionema arabicum HOM05D005874 ORTHO05D007206 8.6e-21 105.1 284 28.2
Pp3c9_17640 Physcomitrium patens HOM05D005874 ORTHO05D007206 8.6e-21 105.1 221 32.6
THA.LOC104802814 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 8.6e-21 105.1 284 26.1
COL.COLO4_13564 Corchorus olitorius HOM05D005874 ORTHO05D007206 2.1e-19 100.5 249 26.5
PGR031G1977 Punica granatum HOM05D005874 ORTHO05D007206 3.6e-19 99.8 284 26.1
Lj9A677G37 Lonicera japonica HOM05D005874 ORTHO05D007206 1.2e-17 94.7 172 29.7
Zm00001eb394310 Zea mays HOM05D005874 ORTHO05D007206 1.4e-15 87.8 279 22.6
AT3G04970 Arabidopsis thaliana HOM05D005874 ORTHO05D007206 4.1e-15 86.3 200 27.5
CARHR079280 Cardamine hirsuta HOM05D005874 ORTHO05D007206 4.1e-15 86.3 222 26.6
Cpa.g.sc84.114 Carica papaya HOM05D005874 ORTHO05D007206 5.4e-15 85.9 284 25.0
AL3G15310 Arabidopsis lyrata HOM05D005874 ORTHO05D007206 2.7e-14 83.6 200 27.5
Nitab4.5_0000176g0140 Nicotiana tabacum HOM05D005874 ORTHO05D007206 6.6e-13 79.0 69 42.0
Nitab4.5_0005924g0020 Nicotiana tabacum HOM05D005874 ORTHO05D007206 1.7e-08 64.3 262 24.8
SEGI_07099 Sequoiadendron giganteum HOM05D000968 ORTHO05D003096 5.4e-07 59.3 194 25.3
GSVIVG01025843001 Vitis vinifera HOM05D000571 ORTHO05D000435 2.7e-06 57.0 180 27.2
Aqoxy5G03004 Aquilegia oxysepala HOM05D000571 ORTHO05D000435 3.5e-06 56.6 68 36.8
SMO174G0057 Selaginella moellendorffii HOM05D000968 ORTHO05D003096 3.5e-06 56.6 199 26.6
Carub.0007s1643 Capsella rubella HOM05D000571 ORTHO05D000435 4.6e-06 56.2 151 28.5


User provided reference genes

Program Settings