Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 9.8e-224 780.0 457 100.0
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 2.8e-29 134.0 151 49.0
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 6.3e-29 132.9 151 45.7
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 1.8e-28 131.3 151 45.7
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 9.1e-28 129.0 151 47.7
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 9.1e-28 129.0 151 47.0
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 9.1e-28 129.0 136 49.3
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 3.5e-27 127.1 154 45.5
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 3.5e-27 127.1 155 46.5
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 1.7e-26 124.8 152 46.7
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.7e-26 124.8 204 40.2
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 1.7e-26 124.8 204 40.2
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 3.8e-26 123.6 152 44.7
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 3.8e-26 123.6 151 46.4
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 5.0e-26 123.2 132 46.2
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 5.0e-26 123.2 152 45.4
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 8.5e-26 122.5 155 44.5
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 8.5e-26 122.5 135 45.2
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 1.1e-25 122.1 152 46.1
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 1.5e-25 121.7 152 44.1
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 1.5e-25 121.7 154 44.8
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.5e-25 121.7 155 44.5
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.9e-25 121.3 152 44.1
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 1.9e-25 121.3 152 44.7
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 1.9e-25 121.3 152 46.7
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 3.2e-25 120.6 155 45.8
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 4.2e-25 120.2 124 46.0
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 5.5e-25 119.8 155 41.3
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 7.2e-25 119.4 154 42.2
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 7.2e-25 119.4 153 43.8
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 9.4e-25 119.0 146 43.8
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.2e-24 118.6 170 41.2
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 1.2e-24 118.6 161 43.5
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 1.2e-24 118.6 191 39.3
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 1.6e-24 118.2 125 48.8
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.1e-24 117.9 154 40.9
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 2.1e-24 117.9 152 44.1
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 2.7e-24 117.5 157 42.0
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 2.7e-24 117.5 161 42.2
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 2.7e-24 117.5 152 44.1
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 3.6e-24 117.1 152 43.4
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 3.6e-24 117.1 154 43.5
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 4.7e-24 116.7 146 43.8
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 6.1e-24 116.3 152 42.8
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 6.1e-24 116.3 156 43.6
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 6.1e-24 116.3 152 45.4
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 8.0e-24 115.9 157 40.8
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 8.0e-24 115.9 107 50.5
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.0e-23 115.5 154 40.3
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 1.0e-23 115.5 154 41.6
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 1.0e-23 115.5 154 41.6
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 1.4e-23 115.2 154 41.6
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 1.8e-23 114.8 151 43.0
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 1.8e-23 114.8 183 40.4
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 1.8e-23 114.8 179 38.0
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 2.3e-23 114.4 154 42.9
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 2.3e-23 114.4 152 40.8
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 3.0e-23 114.0 161 41.6
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 3.0e-23 114.0 150 43.3
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 3.0e-23 114.0 150 43.3
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 3.0e-23 114.0 152 42.1
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 3.0e-23 114.0 155 43.2
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 4.0e-23 113.6 154 42.2
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 5.2e-23 113.2 150 43.3
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 6.8e-23 112.8 154 40.9
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 6.8e-23 112.8 151 40.4
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 8.8e-23 112.5 154 40.3
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 8.8e-23 112.5 146 41.8
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 8.8e-23 112.5 152 41.4
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 8.8e-23 112.5 151 41.7
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 1.5e-22 111.7 210 38.1
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 2.0e-22 111.3 156 41.0
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 2.0e-22 111.3 150 42.0
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 4.4e-22 110.2 202 35.1
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 4.4e-22 110.2 174 40.2
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 4.4e-22 110.2 177 40.7
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 5.7e-22 109.8 160 41.2
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 5.7e-22 109.8 155 43.2
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 7.5e-22 109.4 217 34.1
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 7.5e-22 109.4 152 41.4
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 7.5e-22 109.4 162 42.6
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 9.8e-22 109.0 154 37.7
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 9.8e-22 109.0 152 40.8
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 1.3e-21 108.6 155 40.6
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 1.3e-21 108.6 155 41.9
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 1.3e-21 108.6 190 38.9
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 1.7e-21 108.2 124 46.0
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 1.7e-21 108.2 160 41.2
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 1.7e-21 108.2 174 38.5
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 4.8e-21 106.7 165 38.8
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 6.3e-21 106.3 152 40.8
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 8.3e-21 105.9 190 40.0
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 8.3e-21 105.9 185 38.4
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 8.3e-21 105.9 155 38.1
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 1.1e-20 105.5 152 40.8
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 1.4e-20 105.1 161 39.1
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 1.4e-20 105.1 153 40.5
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 1.8e-20 104.8 160 39.4
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 3.1e-20 104.0 152 38.8
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 4.1e-20 103.6 155 38.1
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 5.4e-20 103.2 152 38.8
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 7.0e-20 102.8 119 42.9
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 3.5e-19 100.5 154 39.6
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 4.5e-19 100.1 151 41.7
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 5.9e-19 99.8 148 41.9
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 5.9e-19 99.8 138 41.3
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 7.7e-19 99.4 122 40.2
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 7.7e-19 99.4 156 39.1
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 1.0e-18 99.0 159 39.0
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 2.9e-18 97.4 155 39.4
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 6.6e-18 96.3 156 37.2
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 8.6e-18 95.9 138 41.3
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 4.7e-16 90.1 128 39.8
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 6.1e-16 89.7 150 38.0
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 1.8e-15 88.2 156 36.5
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 1.8e-15 88.2 156 36.5
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 4.0e-15 87.0 156 35.9
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 8.9e-15 85.9 154 37.0
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 8.9e-15 85.9 150 36.7
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 1.2e-14 85.5 156 35.3
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 2.0e-14 84.7 253 27.7
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 4.4e-14 83.6 189 32.3
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 5.7e-14 83.2 162 33.3
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 5.4e-12 76.6 151 34.4
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.2e-11 75.5 107 39.3
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 2.0e-11 74.7 79 44.3
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 2.0e-11 74.7 152 33.6
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 2.0e-11 74.7 117 38.5
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 2.0e-11 74.7 150 34.7
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 2.7e-11 74.3 153 34.6
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 2.7e-11 74.3 100 41.0
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 3.5e-11 73.9 173 31.8
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 4.5e-11 73.6 153 32.0
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 7.8e-11 72.8 216 28.2
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 2.3e-10 71.2 98 39.8
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 5.0e-10 70.1 199 28.6
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 1.5e-09 68.6 81 43.2
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 1.5e-09 68.6 102 40.2
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 1.2e-08 65.5 108 38.9
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 1.6e-08 65.1 103 41.7
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 1.0e-07 62.4 118 35.6
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 2.3e-07 61.2 126 36.5
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 8.9e-07 59.3 55 45.5
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 1.5e-06 58.5 64 46.9


User provided reference genes

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