Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G419 Micromonas commoda HOM05D001692 ORTHO05D003541 0.0e+00 2165.2 1159 100.0
CBR_g24050 Chara braunii HOM05D001692 ORTHO05D003541 6.5e-22 110.9 315 27.0
CBR_g58829 Chara braunii HOM05D001692 ORTHO05D003541 6.1e-20 104.4 239 28.0
Mapoly0122s0015 Marchantia polymorpha HOM05D001692 ORTHO05D003541 6.3e-17 94.4 299 25.4
SMO337G0056 Selaginella moellendorffii HOM05D001692 ORTHO05D003541 1.3e-14 86.7 236 26.3
Pp3c19_3120 Physcomitrium patens HOM05D001692 ORTHO05D003541 2.7e-12 79.0 258 21.7
ECA234G0027 Erigeron canadensis HOM05D001692 ORTHO05D003541 1.0e-11 77.0 234 25.2
Mapoly0005s0081 Marchantia polymorpha HOM05D001692 ORTHO05D003541 1.0e-11 77.0 370 23.0
HanXRQChr10g0305681 Helianthus annuus HOM05D001692 ORTHO05D003541 1.4e-11 76.6 217 23.5
PSO675G5015 Papaver somniferum HOM05D001692 ORTHO05D003541 2.3e-11 75.9 296 22.6
Gohir.A04G046400 Gossypium hirsutum HOM05D001692 ORTHO05D003541 4.0e-11 75.1 276 22.5
Migut.M00625 Erythranthe guttata HOM05D001692 ORTHO05D003541 5.2e-11 74.7 281 25.3
PSO541G5530 Papaver somniferum HOM05D001692 ORTHO05D003541 8.8e-11 73.9 263 23.6
Sopen12g006770 Solanum pennellii HOM05D001692 ORTHO05D003541 8.8e-11 73.9 225 23.1
Eucgr.F01402 Eucalyptus grandis HOM05D001692 ORTHO05D003541 1.5e-10 73.2 216 24.1
AT3G14590 Arabidopsis thaliana HOM05D001692 ORTHO05D003541 2.0e-10 72.8 199 25.1
Lsat_1_v5_gn_5_126041 Lactuca sativa HOM05D001692 ORTHO05D003541 2.0e-10 72.8 265 25.3
Pp3c18_18010 Physcomitrium patens HOM05D001692 ORTHO05D003541 2.0e-10 72.8 260 23.8
SalBow8G2367 Salvia bowleyana HOM05D001692 ORTHO05D003541 2.0e-10 72.8 287 23.3
vmacro09425 Vaccinium macrocarpon HOM05D001692 ORTHO05D003541 2.0e-10 72.8 237 24.5
HPP92_021477 Vanilla planifolia HOM05D001692 ORTHO05D003541 2.0e-10 72.8 293 22.9
MSTRG.15019 Avicennia marina HOM05D001692 ORTHO05D003541 2.6e-10 72.4 199 24.1
CAN.G315.9 Capsicum annuum HOM05D001692 ORTHO05D003541 2.6e-10 72.4 230 22.6
FvH4_3g16980 Fragaria vesca HOM05D001692 ORTHO05D003541 2.6e-10 72.4 261 24.5
FAN16G2563 Fragaria x ananassa HOM05D001692 ORTHO05D003541 2.6e-10 72.4 261 24.5
BcaC08g44126 Brassica carinata HOM05D001692 ORTHO05D003541 3.4e-10 72.0 223 23.8
AL3G26920 Arabidopsis lyrata HOM05D001692 ORTHO05D003541 4.4e-10 71.6 268 23.9
Lj1C819T6 Lonicera japonica HOM05D001692 ORTHO05D003541 4.4e-10 71.6 156 26.3
unitig_62.g23092 Utricularia gibba HOM05D001692 ORTHO05D003541 4.4e-10 71.6 309 24.3
COL.COLO4_17437 Corchorus olitorius HOM05D001692 ORTHO05D003541 5.7e-10 71.2 226 23.9
RhsimUnG0205700 Rhododendron simsii HOM05D001692 ORTHO05D003541 7.5e-10 70.9 244 23.8
Solyc12g011420.2 Solanum lycopersicum HOM05D001692 ORTHO05D003541 7.5e-10 70.9 225 22.7
BcaB02g10911 Brassica carinata HOM05D001692 ORTHO05D003541 9.8e-10 70.5 204 23.5
A05p18190 Brassica napus HOM05D001692 ORTHO05D003541 9.8e-10 70.5 204 23.5
Ca_03403_v3 Cicer arietinum L. HOM05D001692 ORTHO05D003541 9.8e-10 70.5 261 22.6
Lalb_Chr01g0016131 Lupinus albus HOM05D001692 ORTHO05D003541 9.8e-10 70.5 197 22.8
MD11G1276000 Malus domestica HOM05D001692 ORTHO05D003541 9.8e-10 70.5 255 23.5
RcHm_v2.0_Chr5g0028351 Rosa chinensis HOM05D001692 ORTHO05D003541 9.8e-10 70.5 258 22.1
CAN.G375.76 Capsicum annuum HOM05D001692 ORTHO05D003541 1.3e-09 70.1 228 24.1
Thhalv10011273m.g Eutrema salsugineum HOM05D001692 ORTHO05D003541 1.3e-09 70.1 204 23.5
FvH4_3g17020 Fragaria vesca HOM05D001692 ORTHO05D003541 1.3e-09 70.1 256 22.7
FAN21G3942 Fragaria x ananassa HOM05D001692 ORTHO05D003541 1.3e-09 70.1 253 21.7
BraA05t22295Z Brassica rapa HOM05D001692 ORTHO05D003541 1.7e-09 69.7 248 23.8
Carub.0003s1429 Capsella rubella HOM05D001692 ORTHO05D003541 1.7e-09 69.7 199 24.1
Peaxi162Scf00000g00522 Petunia axillaris HOM05D001692 ORTHO05D003541 1.7e-09 69.7 269 23.4
Sp1g40090 Schrenkiella parvula HOM05D001692 ORTHO05D003541 1.7e-09 69.7 204 23.5
PGSC0003DMG400008571 Solanum tuberosum HOM05D001692 ORTHO05D003541 1.7e-09 69.7 267 23.2
HanXRQChr12g0373531 Helianthus annuus HOM05D001692 ORTHO05D003541 2.2e-09 69.3 223 23.3
Nn4g26545 Nelumbo nucifera HOM05D001692 ORTHO05D003541 2.2e-09 69.3 266 22.9
Rhsim06G0186500 Rhododendron simsii HOM05D001692 ORTHO05D003541 2.2e-09 69.3 212 22.6
Lalb_Chr20g0109021 Lupinus albus HOM05D001692 ORTHO05D003541 2.8e-09 68.9 258 23.3
CSS0044469 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D003541 3.7e-09 68.6 289 22.1
Duzib268G0118 Durio zibethinus HOM05D001692 ORTHO05D003541 3.7e-09 68.6 221 23.1
HanXRQChr03g0072701 Helianthus annuus HOM05D001692 ORTHO05D003541 3.7e-09 68.6 220 24.1
Sp3g12860 Schrenkiella parvula HOM05D001692 ORTHO05D003541 3.7e-09 68.6 262 24.4
Actinidia12620 Actinidia chinensis HOM05D001692 ORTHO05D003541 4.8e-09 68.2 217 22.6
EL10Ac4g08465 Beta vulgaris HOM05D001692 ORTHO05D003541 4.8e-09 68.2 199 23.6
C06p15020 Brassica napus HOM05D001692 ORTHO05D003541 4.8e-09 68.2 204 23.0
BolC6t36679H Brassica oleracea HOM05D001692 ORTHO05D003541 4.8e-09 68.2 204 23.0
Carub.0001s4280 Capsella rubella HOM05D001692 ORTHO05D003541 4.8e-09 68.2 199 23.6
Thecc.07G141900 Theobroma cacao HOM05D001692 ORTHO05D003541 4.8e-09 68.2 271 22.5
Ciclev10018996m.g Citrus clementina HOM05D001692 ORTHO05D003541 6.3e-09 67.8 236 23.3
PSO541G4432 Papaver somniferum HOM05D001692 ORTHO05D003541 6.3e-09 67.8 262 22.5
BcaC05g29056 Brassica carinata HOM05D001692 ORTHO05D003541 8.3e-09 67.4 206 24.3
A01p39160 Brassica napus HOM05D001692 ORTHO05D003541 8.3e-09 67.4 239 24.3
C05p52680 Brassica napus HOM05D001692 ORTHO05D003541 8.3e-09 67.4 206 24.3
BraA01t03961Z Brassica rapa HOM05D001692 ORTHO05D003541 8.3e-09 67.4 239 24.3
Dinv26680 Davidia involucrata HOM05D001692 ORTHO05D003541 8.3e-09 67.4 164 26.2
ECA240G0884 Erigeron canadensis HOM05D001692 ORTHO05D003541 8.3e-09 67.4 161 25.5
Nitab4.5_0000639g0080 Nicotiana tabacum HOM05D001692 ORTHO05D003541 8.3e-09 67.4 169 24.3
PGSC0003DMG400007079 Solanum tuberosum HOM05D001692 ORTHO05D003541 8.3e-09 67.4 204 23.0
Ah.06g187540 Amaranthus hybridus HOM05D001692 ORTHO05D003541 1.1e-08 67.0 199 23.6
BcaC09g48428 Brassica carinata HOM05D001692 ORTHO05D003541 1.1e-08 67.0 239 24.3
C01p49860 Brassica napus HOM05D001692 ORTHO05D003541 1.1e-08 67.0 239 24.3
BolC1t04943H Brassica oleracea HOM05D001692 ORTHO05D003541 1.1e-08 67.0 239 24.3
FAN11G2574 Fragaria x ananassa HOM05D001692 ORTHO05D003541 1.1e-08 67.0 267 24.0
QL04p069054 Quercus lobata HOM05D001692 ORTHO05D003541 1.1e-08 67.0 268 21.6
TPR.G29673 Trifolium pratense HOM05D001692 ORTHO05D003541 1.1e-08 67.0 261 22.6
ATR0585G029 Amborella trichopoda HOM05D001692 ORTHO05D003541 1.4e-08 66.6 234 23.9
CARHR089550 Cardamine hirsuta HOM05D001692 ORTHO05D003541 1.4e-08 66.6 268 22.4
Dinv13327 Davidia involucrata HOM05D001692 ORTHO05D003541 1.4e-08 66.6 214 21.0
Hma1.2p1_0280F.1_g112850 Hydrangea macrophylla HOM05D001692 ORTHO05D003541 1.4e-08 66.6 261 23.4
SEGI_35320 Sequoiadendron giganteum HOM05D001692 ORTHO05D003541 1.4e-08 66.6 127 28.3
Sc03g0010920 Simmondsia chinensis HOM05D001692 ORTHO05D003541 1.4e-08 66.6 260 23.1
Solyc07g061950.4 Solanum lycopersicum HOM05D001692 ORTHO05D003541 1.4e-08 66.6 204 23.0
Sopen07g030220 Solanum pennellii HOM05D001692 ORTHO05D003541 1.4e-08 66.6 204 23.0
MD03G1254900 Malus domestica HOM05D001692 ORTHO05D003541 1.8e-08 66.2 261 22.6
Aa31LG8G1800 Aethionema arabicum HOM05D001692 ORTHO05D003541 2.4e-08 65.9 286 22.4
BraA05t20712Z Brassica rapa HOM05D001692 ORTHO05D003541 2.4e-08 65.9 205 23.4
Haze_08475 Corylus avellana HOM05D001692 ORTHO05D003541 2.4e-08 65.9 276 21.7
Potri.001G379800 Populus trichocarpa HOM05D001692 ORTHO05D003541 2.4e-08 65.9 245 22.9
Hund02324 Selenicereus undatus HOM05D001692 ORTHO05D003541 2.4e-08 65.9 244 22.5
Gorai.009G359900 Gossypium raimondii HOM05D001692 ORTHO05D003541 3.1e-08 65.5 267 21.7
Nitab4.5_0005492g0010 Nicotiana tabacum HOM05D001692 ORTHO05D003541 3.1e-08 65.5 229 22.3
Prupe.4G152200 Prunus persica HOM05D001692 ORTHO05D003541 3.1e-08 65.5 145 28.3
A05p34830 Brassica napus HOM05D001692 ORTHO05D003541 4.1e-08 65.1 248 23.0
Nn3g20725 Nelumbo nucifera HOM05D001692 ORTHO05D003541 4.1e-08 65.1 266 21.8
Sed0010110 Sechium edule HOM05D001692 ORTHO05D003541 4.1e-08 65.1 204 23.0
Aqoxy1G01723 Aquilegia oxysepala HOM05D001692 ORTHO05D003541 5.4e-08 64.7 257 24.1
BolC5t33947H Brassica oleracea HOM05D001692 ORTHO05D003541 5.4e-08 64.7 266 22.9
CARHR043850 Cardamine hirsuta HOM05D001692 ORTHO05D003541 5.4e-08 64.7 262 22.5
MELO3C025594.2 Cucumis melo HOM05D001692 ORTHO05D003541 5.4e-08 64.7 204 22.5
CsaV3_4G032610 Cucumis sativus L. HOM05D001692 ORTHO05D003541 5.4e-08 64.7 204 22.5
Glyma.13G261200 Glycine max HOM05D001692 ORTHO05D003541 5.4e-08 64.7 251 22.7
Gorai.002G042800 Gossypium raimondii HOM05D001692 ORTHO05D003541 5.4e-08 64.7 255 23.5
TWI38G0873 Tripterygium wilfordii HOM05D001692 ORTHO05D003541 5.4e-08 64.7 260 22.3
TWI38G2140 Tripterygium wilfordii HOM05D001692 ORTHO05D003541 5.4e-08 64.7 260 22.3
Cpa.g.c34167.1 Carica papaya HOM05D001692 ORTHO05D003541 7.0e-08 64.3 203 22.7
Glyma.15G245600 Glycine max HOM05D001692 ORTHO05D003541 7.0e-08 64.3 251 23.1
Medtr2g072180 Medicago truncatula HOM05D001692 ORTHO05D003541 7.0e-08 64.3 266 22.2
SHI27675 Sapria himalayana HOM05D001692 ORTHO05D003541 7.0e-08 64.3 199 23.1
vmacro12002 Vaccinium macrocarpon HOM05D001692 ORTHO05D003541 7.0e-08 64.3 216 21.3
AUR62037985 Chenopodium quinoa HOM05D001692 ORTHO05D003541 9.1e-08 63.9 146 27.4
Gohir.D01G034600 Gossypium hirsutum HOM05D001692 ORTHO05D003541 9.1e-08 63.9 255 23.9
THA.LOC104822597 Tarenaya hassleriana HOM05D001692 ORTHO05D003541 9.1e-08 63.9 275 22.9
AT1G53590 Arabidopsis thaliana HOM05D001692 ORTHO05D003541 1.2e-07 63.5 239 22.6
CSS0027870 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D003541 1.2e-07 63.5 262 21.4
CSS0029038 Camellia sinensis var. sinensis HOM05D001692 ORTHO05D003541 1.2e-07 63.5 262 21.8
Manes.15G100600 Manihot esculenta HOM05D001692 ORTHO05D003541 1.2e-07 63.5 217 21.7
Sed0022537 Sechium edule HOM05D001692 ORTHO05D003541 1.2e-07 63.5 204 22.1
RcHm_v2.0_Chr5g0039631 Rosa chinensis HOM05D001692 ORTHO05D003541 1.6e-07 63.2 130 28.5
TAR627G0639 Trochodendron aralioides HOM05D001692 ORTHO05D003541 1.6e-07 63.2 223 22.0
VMungo1080G1562 Vigna mungo HOM05D001692 ORTHO05D003541 1.6e-07 63.2 258 22.5
AUR62019704 Chenopodium quinoa HOM05D001692 ORTHO05D003541 2.0e-07 62.8 146 27.4
Gohir.A01G043500 Gossypium hirsutum HOM05D001692 ORTHO05D003541 2.0e-07 62.8 262 22.9
Lj3g0005272 Lotus japonicus HOM05D001692 ORTHO05D003541 2.0e-07 62.8 229 21.8
Manes.03G091048 Manihot esculenta HOM05D001692 ORTHO05D003541 2.0e-07 62.8 199 23.1
Prupe.4G152300 Prunus persica HOM05D001692 ORTHO05D003541 2.0e-07 62.8 266 20.3
Cc05_g10450 Coffea canephora HOM05D001692 ORTHO05D003541 2.7e-07 62.4 199 22.6
MD11G1275800 Malus domestica HOM05D001692 ORTHO05D003541 2.7e-07 62.4 238 21.0
SGA_v2.0_scaffold73G24332 Striga asiatica HOM05D001692 ORTHO05D003541 2.7e-07 62.4 214 22.9
Gohir.A07G155726 Gossypium hirsutum HOM05D001692 ORTHO05D003541 3.5e-07 62.0 327 21.1
Phvul.005G062600 Phaseolus vulgaris HOM05D001692 ORTHO05D003541 3.5e-07 62.0 251 23.1
CANSAT56G4466 Cannabis sativa HOM05D001692 ORTHO05D003541 4.5e-07 61.6 267 22.1
CiPaw.11G067800 Carya illinoinensis HOM05D001692 ORTHO05D003541 4.5e-07 61.6 268 21.3
Thhalv10020164m.g Eutrema salsugineum HOM05D001692 ORTHO05D003541 4.5e-07 61.6 259 23.2
Os02g0313700 Oryza sativa ssp. japonica HOM05D001692 ORTHO05D003541 4.5e-07 61.6 267 22.1
Pp3c11_23120 Physcomitrium patens HOM05D001692 ORTHO05D003541 5.9e-07 61.2 258 20.9
Sc04g0003480 Simmondsia chinensis HOM05D003988 ORTHO05D004688 7.7e-07 60.8 263 24.0
Zm00001eb203260 Zea mays HOM05D001692 ORTHO05D003541 7.7e-07 60.8 164 21.3
CiPaw.12G046400 Carya illinoinensis HOM05D001692 ORTHO05D003541 1.0e-06 60.5 246 18.7
Pp3c27_6710 Physcomitrium patens HOM05D000524 ORTHO05D000381 1.0e-06 60.5 185 22.7
FAN25G2855 Fragaria x ananassa HOM05D001692 ORTHO05D003541 1.3e-06 60.1 242 20.7
FAN16G0240 Fragaria x ananassa HOM05D001692 ORTHO05D003541 1.7e-06 59.7 245 21.6
Oeu009875.1 Olea europaea HOM05D001692 ORTHO05D003541 1.7e-06 59.7 229 21.4
Sc16g0007860 Simmondsia chinensis HOM05D001692 ORTHO05D003541 2.3e-06 59.3 160 25.0
FAN11G2256 Fragaria x ananassa HOM05D001692 ORTHO05D003541 2.9e-06 58.9 245 21.6
Ah.11g045100 Amaranthus hybridus HOM05D003988 ORTHO05D004688 5.0e-06 58.2 250 24.8
Cfa019475 Carpinus fangiana HOM05D001692 ORTHO05D003541 5.0e-06 58.2 267 21.0
Duzib213G0773 Durio zibethinus HOM05D001692 ORTHO05D003541 5.0e-06 58.2 95 29.5
MD03G1254200 Malus domestica HOM05D001692 ORTHO05D003541 5.0e-06 58.2 258 19.8
Peaxi162Scf00111g01142 Petunia axillaris HOM05D001692 ORTHO05D003541 5.0e-06 58.2 229 22.7
Aa31LG10G1660 Aethionema arabicum HOM05D001692 ORTHO05D003541 6.5e-06 57.8 188 21.8
MD00G1185600 Malus domestica HOM05D001692 ORTHO05D003541 8.6e-06 57.4 155 21.9
HPP92_002947 Vanilla planifolia HOM05D001692 ORTHO05D003541 8.6e-06 57.4 261 21.1


User provided reference genes

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