Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G392 Micromonas commoda HOM05D005288 ORTHO05D006574 7.9e-189 663.7 353 100.0
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 8.0e-40 168.7 226 46.0
AagrBONN_evm.TU.Sc2ySwM_344.1252 Anthoceros agrestis HOM05D005288 ORTHO05D000776 2.2e-37 160.6 227 41.4
COL.COLO4_33103 Corchorus olitorius HOM05D005288 ORTHO05D006574 1.2e-35 154.8 231 40.7
Nitab4.5_0002064g0080 Nicotiana tabacum HOM05D005288 ORTHO05D006574 1.2e-35 154.8 236 40.7
GSVIVG01016205001 Vitis vinifera HOM05D005288 ORTHO05D006574 1.2e-35 154.8 245 40.4
Duzib052G0951 Durio zibethinus HOM05D005288 ORTHO05D006574 1.6e-35 154.5 243 40.7
Hund15173 Selenicereus undatus HOM05D005288 ORTHO05D006574 1.6e-35 154.5 264 38.3
Nitab4.5_0007636g0020 Nicotiana tabacum HOM05D005288 ORTHO05D006574 2.0e-35 154.1 236 40.7
Gorai.012G135300 Gossypium raimondii HOM05D005288 ORTHO05D006574 2.7e-35 153.7 224 41.1
MBI11_g07621_MAGBIO Magnolia biondii HOM05D005288 ORTHO05D006574 2.7e-35 153.7 224 43.3
Sc22g0002320 Simmondsia chinensis HOM05D005288 ORTHO05D006574 2.7e-35 153.7 224 41.5
arahy.Tifrunner.gnm1.ann1.A0975M Arachis hypogaea HOM05D005288 ORTHO05D006574 3.5e-35 153.3 224 42.0
Dinv09930 Davidia involucrata HOM05D005288 ORTHO05D006574 3.5e-35 153.3 232 40.5
Migut.H01124 Erythranthe guttata HOM05D005288 ORTHO05D006574 3.5e-35 153.3 224 40.2
Nn1g06103 Nelumbo nucifera HOM05D005288 ORTHO05D006574 3.5e-35 153.3 241 41.5
Sopen02g025940 Solanum pennellii HOM05D005288 ORTHO05D006574 3.5e-35 153.3 224 40.2
unitig_27.g25064 Utricularia gibba HOM05D005288 ORTHO05D006574 3.5e-35 153.3 224 41.1
CAN.G1681.15 Capsicum annuum HOM05D005288 ORTHO05D006574 4.6e-35 152.9 224 40.2
CiPaw.04G084200 Carya illinoinensis HOM05D005288 ORTHO05D006574 4.6e-35 152.9 224 42.0
ATR0681G389 Amborella trichopoda HOM05D005288 ORTHO05D006574 6.0e-35 152.5 224 40.6
Lj4A865T28 Lonicera japonica HOM05D005288 ORTHO05D006574 6.0e-35 152.5 224 41.1
arahy.Tifrunner.gnm1.ann1.MGEL7E Arachis hypogaea HOM05D005288 ORTHO05D006574 7.8e-35 152.1 224 42.4
MSTRG.2688 Avicennia marina HOM05D005288 ORTHO05D006574 7.8e-35 152.1 224 40.6
Gohir.A04G109416 Gossypium hirsutum HOM05D005288 ORTHO05D006574 7.8e-35 152.1 243 39.9
Hma1.2p1_1099F.1_g256850 Hydrangea macrophylla HOM05D005288 ORTHO05D006574 7.8e-35 152.1 224 41.1
Manes.12G150400 Manihot esculenta HOM05D005288 ORTHO05D006574 7.8e-35 152.1 231 40.7
Peaxi162Scf00129g00316 Petunia axillaris HOM05D005288 ORTHO05D006574 7.8e-35 152.1 237 40.9
SGA_v2.0_scaffold146G36155 Striga asiatica HOM05D005288 ORTHO05D006574 7.8e-35 152.1 224 40.6
TAR628G1127 Trochodendron aralioides HOM05D005288 ORTHO05D006574 7.8e-35 152.1 224 42.9
Ca_24797_v3 Cicer arietinum L. HOM05D005288 ORTHO05D006574 1.0e-34 151.8 224 40.2
QL02p010224 Quercus lobata HOM05D005288 ORTHO05D006574 1.0e-34 151.8 238 40.3
CDE04G3439 Ceratophyllum demersum HOM05D005288 ORTHO05D006574 1.3e-34 151.4 314 35.0
Medtr1g031890 Medicago truncatula HOM05D005288 ORTHO05D006574 1.3e-34 151.4 224 40.2
Medtr1g085490 Medicago truncatula HOM05D005288 ORTHO05D006574 1.3e-34 151.4 224 40.2
CSS0028117 Camellia sinensis var. sinensis HOM05D005288 ORTHO05D006574 1.7e-34 151.0 224 40.6
CSS0042405 Camellia sinensis var. sinensis HOM05D005288 ORTHO05D006574 1.7e-34 151.0 224 40.6
Ca_06746_v3 Cicer arietinum L. HOM05D005288 ORTHO05D006574 1.7e-34 151.0 224 40.2
DCAR_029930 Daucus carota HOM05D005288 ORTHO05D006574 2.3e-34 150.6 224 41.1
Sabra16G0006900 Salix brachista HOM05D005288 ORTHO05D006574 2.3e-34 150.6 264 37.1
Ah.12g062320 Amaranthus hybridus HOM05D005288 ORTHO05D006574 3.0e-34 150.2 224 40.2
Lsat_1_v5_gn_5_89980 Lactuca sativa HOM05D005288 ORTHO05D006574 3.0e-34 150.2 277 36.1
QL06p051886 Quercus lobata HOM05D005288 ORTHO05D006574 3.0e-34 150.2 224 41.5
Sed0016851 Sechium edule HOM05D005288 ORTHO05D006574 3.0e-34 150.2 243 39.9
Gohir.D04G148800 Gossypium hirsutum HOM05D005288 ORTHO05D006574 3.9e-34 149.8 224 40.6
Zm00001eb129960 Zea mays HOM05D005288 ORTHO05D006574 3.9e-34 149.8 239 38.9
MSTRG.23423 Avicennia marina HOM05D005288 ORTHO05D006574 5.0e-34 149.4 224 41.1
A06p31470 Brassica napus HOM05D005288 ORTHO05D006574 5.0e-34 149.4 231 41.1
Cc03_g13010 Coffea canephora HOM05D005288 ORTHO05D006574 5.0e-34 149.4 224 40.2
Os08g0310100 Oryza sativa ssp. japonica HOM05D005288 ORTHO05D006574 5.0e-34 149.4 239 39.3
Phvul.005G016800 Phaseolus vulgaris HOM05D005288 ORTHO05D006574 5.0e-34 149.4 224 40.6
Thecc.02G155300 Theobroma cacao HOM05D005288 ORTHO05D006574 5.0e-34 149.4 243 39.5
Atru.chr4.645 Acer truncatum HOM05D005288 ORTHO05D006574 6.6e-34 149.1 241 39.0
BcaB02g09811 Brassica carinata HOM05D005288 ORTHO05D006574 6.6e-34 149.1 269 38.7
Medtr4g118060 Medicago truncatula HOM05D005288 ORTHO05D006574 6.6e-34 149.1 224 39.3
BraA06t26084Z Brassica rapa HOM05D005288 ORTHO05D006574 8.6e-34 148.7 231 41.1
CiPaw.03G124000 Carya illinoinensis HOM05D005288 ORTHO05D006574 8.6e-34 148.7 224 41.1
BcaC01g02699 Brassica carinata HOM05D005288 ORTHO05D006574 1.1e-33 148.3 231 41.1
C03p61490 Brassica napus HOM05D005288 ORTHO05D006574 1.1e-33 148.3 231 41.1
BolC3t18410H Brassica oleracea HOM05D005288 ORTHO05D006574 1.1e-33 148.3 231 41.1
CARHR278650 Cardamine hirsuta HOM05D005288 ORTHO05D006574 1.5e-33 147.9 231 40.7
Potri.001G324300 Populus trichocarpa HOM05D005288 ORTHO05D006574 1.5e-33 147.9 237 40.1
AUR62037110 Chenopodium quinoa HOM05D005288 ORTHO05D006574 1.9e-33 147.5 224 39.7
Potri.016G002400 Populus trichocarpa HOM05D005288 ORTHO05D006574 1.9e-33 147.5 241 39.0
BcaC04g23299 Brassica carinata HOM05D005288 ORTHO05D006574 2.5e-33 147.1 231 40.7
Psat6g157720 Pisum sativum HOM05D005288 ORTHO05D006574 2.5e-33 147.1 224 39.3
Prupe.6G163200 Prunus persica HOM05D005288 ORTHO05D006574 2.5e-33 147.1 231 40.3
BcaB04g19983 Brassica carinata HOM05D005288 ORTHO05D006574 3.3e-33 146.7 231 40.7
A09p08770 Brassica napus HOM05D005288 ORTHO05D006574 3.3e-33 146.7 231 40.7
C09p09960 Brassica napus HOM05D005288 ORTHO05D006574 3.3e-33 146.7 231 40.7
BolC9t53904H Brassica oleracea HOM05D005288 ORTHO05D006574 3.3e-33 146.7 231 40.7
BraA09t36528Z Brassica rapa HOM05D005288 ORTHO05D006574 3.3e-33 146.7 231 40.7
Carub.0008s2547 Capsella rubella HOM05D005288 ORTHO05D006574 3.3e-33 146.7 231 40.7
HanXRQChr17g0554451 Helianthus annuus HOM05D005288 ORTHO05D006574 3.3e-33 146.7 241 39.0
Lj1g0011811 Lotus japonicus HOM05D005288 ORTHO05D006574 3.3e-33 146.7 224 39.7
Prupe.8G100400 Prunus persica HOM05D005288 ORTHO05D006574 3.3e-33 146.7 244 39.8
Solyc02g081310.3 Solanum lycopersicum HOM05D005288 ORTHO05D006574 3.3e-33 146.7 218 39.9
TWI79G0070 Tripterygium wilfordii HOM05D005288 ORTHO05D006574 3.3e-33 146.7 227 40.1
AL8G42090 Arabidopsis lyrata HOM05D005288 ORTHO05D006574 4.3e-33 146.4 231 40.3
AT5G64670 Arabidopsis thaliana HOM05D005288 ORTHO05D006574 4.3e-33 146.4 231 40.3
PSO210G3075 Papaver somniferum HOM05D005288 ORTHO05D006574 4.3e-33 146.4 223 39.5
PSO238G0014 Papaver somniferum HOM05D005288 ORTHO05D006574 4.3e-33 146.4 223 39.5
RcHm_v2.0_Chr5g0056641 Rosa chinensis HOM05D005288 ORTHO05D006574 4.3e-33 146.4 224 40.6
Aa31LG1G17270 Aethionema arabicum HOM05D005288 ORTHO05D006574 5.6e-33 146.0 243 39.5
MD17G1181300 Malus domestica HOM05D005288 ORTHO05D006574 5.6e-33 146.0 224 40.6
Rhsim10G0141500 Rhododendron simsii HOM05D005288 ORTHO05D006574 5.6e-33 146.0 224 38.4
PGSC0003DMG400016731 Solanum tuberosum HOM05D005288 ORTHO05D006574 5.6e-33 146.0 218 39.4
EL10As1g23109 Beta vulgaris HOM05D005288 ORTHO05D006574 7.3e-33 145.6 224 38.4
MELO3C022914.2 Cucumis melo HOM05D005288 ORTHO05D006574 7.3e-33 145.6 224 40.6
CsaV3_5G027610 Cucumis sativus L. HOM05D005288 ORTHO05D006574 7.3e-33 145.6 224 40.6
FAN25G0340 Fragaria x ananassa HOM05D005288 ORTHO05D006574 7.3e-33 145.6 231 40.3
Sp2g27730 Schrenkiella parvula HOM05D005288 ORTHO05D006574 7.3e-33 145.6 224 40.6
CANSAT78G2510 Cannabis sativa HOM05D005288 ORTHO05D006574 9.5e-33 145.2 224 40.2
Cfa002866 Carpinus fangiana HOM05D005288 ORTHO05D006574 9.5e-33 145.2 236 39.8
FAN16G1456 Fragaria x ananassa HOM05D005288 ORTHO05D006574 9.5e-33 145.2 231 40.3
FAN21G3369 Fragaria x ananassa HOM05D005288 ORTHO05D006574 9.5e-33 145.2 231 40.3
VMungo0464G1657 Vigna mungo HOM05D005288 ORTHO05D006574 1.2e-32 144.8 224 40.2
AUR62042368 Chenopodium quinoa HOM05D005288 ORTHO05D006574 1.6e-32 144.4 224 39.7
Thhalv10004738m.g Eutrema salsugineum HOM05D005288 ORTHO05D006574 1.6e-32 144.4 231 39.8
FvH4_3g30590 Fragaria vesca HOM05D005288 ORTHO05D006574 1.6e-32 144.4 231 39.8
Glyma.15G264500 Glycine max HOM05D005288 ORTHO05D006574 1.6e-32 144.4 224 39.3
Lalb_Chr20g0108351 Lupinus albus HOM05D005288 ORTHO05D006574 1.6e-32 144.4 224 40.2
Ciclev10026233m.g Citrus clementina HOM05D005288 ORTHO05D006574 2.1e-32 144.1 231 39.0
TWI75G0931 Tripterygium wilfordii HOM05D005288 ORTHO05D006574 2.1e-32 144.1 224 39.7
Glyma.08G162600 Glycine max HOM05D005288 ORTHO05D006574 3.6e-32 143.3 224 38.8
THA.LOC104799448 Tarenaya hassleriana HOM05D005288 ORTHO05D006574 3.6e-32 143.3 231 39.4
Actinidia06665 Actinidia chinensis HOM05D005288 ORTHO05D006574 4.7e-32 142.9 225 41.3
Mapoly0020s0151 Marchantia polymorpha HOM05D005288 ORTHO05D006574 6.2e-32 142.5 230 38.3
Oeu028499.1 Olea europaea HOM05D005288 ORTHO05D006574 1.1e-31 141.7 228 39.9
SGA_v2.0_scaffold76G25165 Striga asiatica HOM05D005288 ORTHO05D006574 1.8e-31 141.0 253 36.8
Mapoly0177s0003 Marchantia polymorpha HOM05D005288 ORTHO05D006574 2.3e-31 140.6 230 37.8
Cpa.g.sc42.91 Carica papaya HOM05D005288 ORTHO05D006574 1.2e-30 138.3 238 37.8
PGR119G1388 Punica granatum HOM05D005288 ORTHO05D006574 1.5e-30 137.9 236 37.7
Aqoxy2G00112 Aquilegia oxysepala HOM05D005288 ORTHO05D006574 4.4e-30 136.3 224 41.5
Eucgr.I00243 Eucalyptus grandis HOM05D005288 ORTHO05D006574 9.8e-30 135.2 224 37.5
ECA248G2357 Erigeron canadensis HOM05D005288 ORTHO05D006574 2.9e-29 133.7 212 39.2
PRCOL_00002014 Prasinoderma coloniale HOM05D005288 ORTHO05D006574 3.2e-28 130.2 212 39.6
vmacro12445 Vaccinium macrocarpon HOM05D005288 ORTHO05D006574 5.4e-28 129.4 221 36.2
Oeu064304.2 Olea europaea HOM05D005288 ORTHO05D006574 7.8e-27 125.6 271 33.2
SHI11525 Sapria himalayana HOM05D005288 ORTHO05D006574 3.9e-26 123.2 211 37.9
HPP92_011348 Vanilla planifolia HOM05D005288 ORTHO05D006574 5.0e-26 122.9 167 43.1
CDE07G0732 Ceratophyllum demersum HOM05D002402 ORTHO05D002633 2.6e-22 110.5 153 41.8
SMO367G0866 Selaginella moellendorffii HOM05D005288 ORTHO05D006574 2.6e-22 110.5 224 39.3
Pp3c25_6490 Physcomitrium patens HOM05D005288 ORTHO05D006574 3.2e-20 103.6 127 41.7
Hma1.2p1_1099F.1_g256840 Hydrangea macrophylla HOM05D005288 ORTHO05D006574 2.3e-18 97.4 157 37.6
Lalb_Chr25g0284211 Lupinus albus HOM05D005288 ORTHO05D006574 1.1e-17 95.1 152 38.2
Haze_25184 Corylus avellana HOM05D005288 ORTHO05D006574 1.9e-17 94.4 160 36.9
Dinv05183 Davidia involucrata HOM05D005288 ORTHO05D006574 1.9e-17 94.4 155 36.1
Cre11.g476800 Chlamydomonas reinhardtii HOM05D005288 ORTHO05D006574 2.4e-15 87.4 229 29.7
Cfa023704 Carpinus fangiana HOM05D005288 ORTHO05D006574 2.0e-14 84.3 256 33.2
Haze_26805 Corylus avellana HOM05D005288 ORTHO05D006574 5.8e-14 82.8 172 36.6
MBI11_g36871_MAGBIO Magnolia biondii HOM05D005288 ORTHO05D006574 1.1e-12 78.6 75 56.0
MBI11_g48066_MAGBIO Magnolia biondii HOM05D005288 ORTHO05D006574 5.4e-12 76.3 75 54.7
FAN11G2409 Fragaria x ananassa HOM05D005288 ORTHO05D006574 9.2e-12 75.5 82 52.4
Glyma.15G244400 Glycine max HOM05D005288 ORTHO05D006574 4.6e-11 73.2 75 52.0
vmacro12831 Vaccinium macrocarpon HOM05D005288 ORTHO05D006574 2.3e-10 70.9 94 47.9
ATR0171G026 Amborella trichopoda HOM05D004761 ORTHO05D005813 1.4e-07 61.6 93 40.9
TAR381G0280 Trochodendron aralioides HOM05D005288 ORTHO05D006574 1.8e-07 61.2 89 44.9
Lalb_Chr25g0284201 Lupinus albus HOM05D005288 ORTHO05D006574 9.0e-07 58.9 87 40.2
MBI11_g45437_MAGBIO Magnolia biondii HOM05D005288 ORTHO05D006574 5.8e-06 56.2 69 55.1


User provided reference genes

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