Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 2.1e-120 435.6 207 100.0
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 1.4e-44 183.7 190 45.8
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.8e-44 183.3 188 45.7
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 3.1e-44 182.6 188 43.6
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 4.5e-43 178.7 188 46.3
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 7.8e-43 177.9 190 44.7
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.3e-42 176.4 184 48.4
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 2.3e-42 176.4 181 49.2
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 2.9e-42 176.0 188 45.7
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 3.8e-42 175.6 181 45.9
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 5.0e-42 175.3 184 47.8
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 5.0e-42 175.3 184 47.8
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 6.6e-42 174.9 184 49.5
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 8.6e-42 174.5 187 45.5
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 1.1e-41 174.1 184 47.3
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 1.1e-41 174.1 188 45.2
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 1.5e-41 173.7 180 47.8
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 1.5e-41 173.7 190 44.7
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 1.9e-41 173.3 188 46.3
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 1.9e-41 173.3 181 45.9
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 2.5e-41 172.9 188 44.1
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 2.5e-41 172.9 181 45.9
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 3.3e-41 172.6 190 45.3
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 3.3e-41 172.6 184 46.7
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 4.3e-41 172.2 183 44.8
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 4.3e-41 172.2 187 44.9
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 4.3e-41 172.2 180 46.1
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 4.3e-41 172.2 183 47.0
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 7.3e-41 171.4 188 46.3
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 7.3e-41 171.4 181 44.8
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 7.3e-41 171.4 188 46.3
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 7.3e-41 171.4 181 47.0
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 9.5e-41 171.0 184 46.2
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 9.5e-41 171.0 181 44.8
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 9.5e-41 171.0 181 47.5
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 1.2e-40 170.6 188 43.1
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.2e-40 170.6 181 46.4
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 1.6e-40 170.2 181 46.4
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 2.1e-40 169.9 188 45.7
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 2.1e-40 169.9 181 44.2
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 2.8e-40 169.5 181 47.0
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.8e-40 169.5 188 44.7
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 3.6e-40 169.1 181 46.4
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 3.6e-40 169.1 188 44.7
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 4.7e-40 168.7 178 46.6
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 4.7e-40 168.7 188 44.1
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 4.7e-40 168.7 189 45.0
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 6.1e-40 168.3 184 46.7
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 6.1e-40 168.3 190 46.3
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.0e-39 167.5 181 47.5
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 1.0e-39 167.5 181 47.5
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 1.0e-39 167.5 188 43.6
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 1.0e-39 167.5 191 45.5
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 1.8e-39 166.8 184 46.2
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 1.8e-39 166.8 188 46.3
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 1.8e-39 166.8 181 42.5
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 2.3e-39 166.4 181 43.6
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 2.3e-39 166.4 181 44.8
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 2.3e-39 166.4 191 45.5
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 2.3e-39 166.4 191 44.5
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 2.3e-39 166.4 190 42.6
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 3.0e-39 166.0 181 45.3
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 3.0e-39 166.0 188 43.6
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 4.0e-39 165.6 190 45.8
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 5.2e-39 165.2 181 45.3
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 5.2e-39 165.2 188 43.6
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 5.2e-39 165.2 181 45.3
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 5.2e-39 165.2 181 45.9
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 6.8e-39 164.9 183 47.0
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 6.8e-39 164.9 181 43.1
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 6.8e-39 164.9 188 41.5
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 6.8e-39 164.9 181 44.2
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 6.8e-39 164.9 200 43.0
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 8.9e-39 164.5 181 45.9
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 8.9e-39 164.5 188 43.1
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 1.2e-38 164.1 184 45.1
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 1.2e-38 164.1 190 45.3
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.2e-38 164.1 183 43.7
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 1.2e-38 164.1 182 45.1
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 1.2e-38 164.1 188 41.5
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 1.2e-38 164.1 181 43.1
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 1.5e-38 163.7 181 45.3
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 1.5e-38 163.7 188 43.1
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 2.6e-38 162.9 183 47.0
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 2.6e-38 162.9 183 47.0
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 2.6e-38 162.9 183 46.4
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 2.6e-38 162.9 181 42.5
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 3.4e-38 162.5 181 44.8
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 4.4e-38 162.2 181 45.3
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 4.4e-38 162.2 183 43.7
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 5.8e-38 161.8 181 45.9
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 5.8e-38 161.8 182 44.0
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 5.8e-38 161.8 181 44.8
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 7.5e-38 161.4 189 42.3
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 7.5e-38 161.4 190 42.1
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 7.5e-38 161.4 181 42.5
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 9.8e-38 161.0 188 43.1
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 1.3e-37 160.6 181 43.1
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.7e-37 160.2 182 43.4
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.7e-37 160.2 145 50.3
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 2.2e-37 159.8 188 43.1
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 2.2e-37 159.8 182 43.4
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 2.2e-37 159.8 182 43.4
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 3.7e-37 159.1 188 41.5
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 3.7e-37 159.1 183 44.8
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 3.7e-37 159.1 183 42.6
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 6.4e-37 158.3 188 42.6
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 6.4e-37 158.3 191 44.0
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 8.3e-37 157.9 181 47.0
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 8.3e-37 157.9 182 42.9
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 1.9e-36 156.8 189 45.5
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 2.4e-36 156.4 184 42.4
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 4.1e-36 155.6 182 43.4
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 5.4e-36 155.2 182 43.4
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 5.4e-36 155.2 180 42.2
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 7.0e-36 154.8 181 42.5
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 1.6e-35 153.7 152 47.4
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 1.6e-35 153.7 180 41.7
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 3.5e-35 152.5 186 44.1
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 4.6e-35 152.1 190 40.5
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 1.0e-34 151.0 167 46.7
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 1.7e-34 150.2 163 44.2
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 1.7e-34 150.2 182 40.1
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 3.9e-34 149.1 140 52.1
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 5.0e-34 148.7 147 48.3
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 5.0e-34 148.7 189 40.2
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 8.6e-34 147.9 194 36.6
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 4.3e-33 145.6 193 38.9
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 2.1e-32 143.3 145 47.6
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 2.3e-31 139.8 156 44.9
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 3.4e-30 136.0 161 43.5
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 5.8e-30 135.2 153 43.1
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 1.0e-26 124.4 150 44.7
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 9.5e-25 117.9 194 33.5
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 2.8e-24 116.3 110 45.5
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 2.6e-22 109.8 110 46.4
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 4.9e-21 105.5 92 47.8
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 1.0e-18 97.8 113 43.4
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 3.1e-15 86.3 113 37.2
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 5.2e-15 85.5 114 39.5
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 5.2e-15 85.5 158 36.1
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 1.2e-14 84.3 112 37.5
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 1.3e-13 80.9 71 49.3
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 1.4e-12 77.4 64 54.7
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 1.9e-09 67.0 99 36.4
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 3.4e-06 56.2 109 33.0
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 7.6e-06 55.1 75 36.0


User provided reference genes

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