Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 5.6e-245 850.5 428 100.0
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 9.9e-85 318.2 428 42.1
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 1.7e-84 317.4 428 41.6
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 6.4e-84 315.5 428 41.1
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 1.6e-82 310.8 428 41.8
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 2.1e-82 310.5 430 41.2
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 3.5e-82 309.7 428 40.4
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 3.5e-82 309.7 430 41.6
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 4.6e-82 309.3 442 39.4
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 6.0e-82 308.9 430 39.5
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 7.9e-82 308.5 429 41.3
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 1.0e-81 308.1 428 40.7
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 1.8e-81 307.4 430 41.6
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 2.3e-81 307.0 428 41.4
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 2.3e-81 307.0 429 40.1
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 3.0e-81 306.6 430 41.2
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 3.0e-81 306.6 427 40.5
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 3.9e-81 306.2 430 40.5
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 5.1e-81 305.8 428 40.9
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 8.7e-81 305.1 428 41.1
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 8.7e-81 305.1 429 39.9
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 1.1e-80 304.7 429 40.8
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 1.5e-80 304.3 429 40.1
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.9e-80 303.9 430 40.2
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 1.9e-80 303.9 427 41.0
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 1.9e-80 303.9 429 40.3
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 2.5e-80 303.5 429 40.6
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 2.5e-80 303.5 430 40.2
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 2.5e-80 303.5 429 40.6
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 3.3e-80 303.1 429 40.8
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 3.3e-80 303.1 429 40.1
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 3.3e-80 303.1 429 39.4
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 4.3e-80 302.8 429 40.1
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 4.3e-80 302.8 455 42.0
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 7.4e-80 302.0 429 40.1
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 7.4e-80 302.0 429 40.1
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 9.6e-80 301.6 439 40.5
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 1.3e-79 301.2 431 40.1
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 1.6e-79 300.8 430 40.0
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 1.6e-79 300.8 428 39.5
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 2.1e-79 300.4 430 40.0
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 2.1e-79 300.4 427 40.7
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 2.1e-79 300.4 429 39.6
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 4.8e-79 299.3 430 41.4
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 4.8e-79 299.3 430 40.5
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 6.2e-79 298.9 429 39.9
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 6.2e-79 298.9 429 39.9
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 6.2e-79 298.9 435 39.8
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 6.2e-79 298.9 443 39.7
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 6.2e-79 298.9 439 40.3
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 8.1e-79 298.5 428 41.1
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 8.1e-79 298.5 414 40.8
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 8.1e-79 298.5 414 40.8
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 1.1e-78 298.1 429 39.9
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 1.1e-78 298.1 433 40.4
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 1.8e-78 297.4 443 39.7
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 2.4e-78 297.0 428 40.7
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 3.1e-78 296.6 429 39.9
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 3.1e-78 296.6 430 40.7
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 4.0e-78 296.2 429 38.9
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 4.0e-78 296.2 430 40.2
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 5.3e-78 295.8 356 42.7
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 6.9e-78 295.4 428 38.6
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 6.9e-78 295.4 429 39.9
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 6.9e-78 295.4 430 38.8
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 6.9e-78 295.4 429 39.6
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 9.0e-78 295.0 430 38.8
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 9.0e-78 295.0 428 38.3
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 9.0e-78 295.0 428 39.7
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 9.0e-78 295.0 428 39.3
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 9.0e-78 295.0 428 39.3
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 9.0e-78 295.0 445 38.4
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 1.2e-77 294.7 428 38.3
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 1.5e-77 294.3 428 38.3
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 1.5e-77 294.3 428 38.3
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.0e-77 293.9 429 39.2
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 2.0e-77 293.9 428 38.3
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 2.6e-77 293.5 428 38.1
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 3.4e-77 293.1 428 38.1
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 3.4e-77 293.1 428 38.6
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 4.5e-77 292.7 428 38.3
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 4.5e-77 292.7 428 38.6
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 4.5e-77 292.7 428 38.6
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 5.8e-77 292.4 428 38.8
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 1.0e-76 291.6 443 37.5
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 1.0e-76 291.6 427 38.4
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.0e-76 291.6 444 39.4
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 1.3e-76 291.2 428 38.1
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 1.3e-76 291.2 430 39.1
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 1.7e-76 290.8 428 37.9
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 2.2e-76 290.4 430 38.6
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 2.2e-76 290.4 442 38.5
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 2.2e-76 290.4 428 37.9
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 2.9e-76 290.0 428 38.1
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 3.8e-76 289.7 430 37.7
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 3.8e-76 289.7 430 37.7
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 3.8e-76 289.7 430 37.7
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 4.9e-76 289.3 428 38.6
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 4.9e-76 289.3 430 38.8
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 6.4e-76 288.9 428 38.3
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 6.4e-76 288.9 430 39.1
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 6.4e-76 288.9 428 37.9
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 8.4e-76 288.5 430 38.8
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 8.4e-76 288.5 442 38.0
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 1.1e-75 288.1 428 38.1
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 1.1e-75 288.1 428 37.6
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 1.4e-75 287.7 442 39.4
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 1.9e-75 287.3 430 38.6
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 2.5e-75 287.0 430 38.4
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 2.5e-75 287.0 428 37.4
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 7.1e-75 285.4 429 39.2
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 9.3e-75 285.0 428 37.6
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.2e-74 284.6 410 40.7
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 1.2e-74 284.6 428 38.1
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 1.2e-74 284.6 442 37.6
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 2.1e-74 283.9 443 39.3
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 3.5e-74 283.1 431 38.5
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 3.5e-74 283.1 428 38.8
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 4.6e-74 282.7 429 37.8
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 7.9e-74 282.0 431 38.7
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 1.0e-73 281.6 428 37.1
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.0e-73 281.6 442 38.2
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 1.3e-73 281.2 428 38.1
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 3.9e-73 279.6 428 38.6
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 1.9e-72 277.3 434 37.1
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 5.7e-72 275.8 324 42.6
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 1.6e-71 274.2 503 34.4
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 6.2e-71 272.3 460 37.2
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 1.5e-69 267.7 389 40.6
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 1.1e-67 261.5 428 36.4
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 1.1e-67 261.5 296 45.6
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 1.0e-65 255.0 296 44.9
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 2.8e-63 246.9 282 46.1
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 1.8e-62 244.2 393 37.9
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 3.2e-59 233.4 446 35.4
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 4.6e-58 229.6 416 34.4
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.7e-47 194.5 355 35.2
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 2.8e-39 167.2 171 49.1
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 1.2e-37 161.8 334 33.8
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 1.5e-32 144.8 312 31.4
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 2.6e-32 144.1 147 53.1
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 6.3e-31 139.4 127 52.0
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 4.1e-30 136.7 128 51.6
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 2.2e-28 131.0 237 31.6
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 6.5e-28 129.4 233 36.1
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 5.5e-27 126.3 128 49.2
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 5.9e-21 106.3 105 46.7
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.9e-20 104.0 135 37.8
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 1.4e-17 95.1 105 45.7
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 4.1e-14 83.6 121 33.9
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 1.6e-13 81.6 80 51.2
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 1.3e-07 62.0 48 50.0


User provided reference genes

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